IVF0013727 (gene) Melon (IVF77) v1

Overview


Name	IVF0013727
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RNase H domain-containing protein
Location	chr01: 8311470 .. 8311697 (-)
RNA-Seq Expression	IVF0013727
Synteny	IVF0013727

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGCAGACGGCGCAAACGCACGGGTGATGGCTGCGTTCGTCGAGTGAAGGAGCTGAAGAGAAGAAGGAGAAGAACGGCGTGGCATTGGCTTCGTGAAGGTAGTCGAGGACGCGCGGACGGAGGTGGAGACACGAATGGAGGAGAAAGGATGGAGACGGCGGCGCCGGACGATGTAGGAAGAAGAAGAAGATGGAACGGCTGGGGGGGTATCGCGCGCCTTTAG

mRNA sequence

ATGGATGGCAGACGGCGCAAACGCACGGGTGATGGCTGCGTTCGTCGAGTGAAGGAGCTGAAGAGAAGAAGGAGAAGAACGGCGTGGCATTGGCTTCGTGAAGGTAGTCGAGGACGCGCGGACGGAGGTGGAGACACGAATGGAGGAGAAAGGATGGAGACGGCGGCGCCGGACGATGTAGGAAGAAGAAGAAGATGGAACGGCTGGGGGGGTATCGCGCGCCTTTAG

Coding sequence (CDS)

ATGGATGGCAGACGGCGCAAACGCACGGGTGATGGCTGCGTTCGTCGAGTGAAGGAGCTGAAGAGAAGAAGGAGAAGAACGGCGTGGCATTGGCTTCGTGAAGGTAGTCGAGGACGCGCGGACGGAGGTGGAGACACGAATGGAGGAGAAAGGATGGAGACGGCGGCGCCGGACGATGTAGGAAGAAGAAGAAGATGGAACGGCTGGGGGGGTATCGCGCGCCTTTAG

Protein sequence

MDGRRRKRTGDGCVRRVKELKRRRRRTAWHWLREGSRGRADGGGDTNGGERMETAAPDDVGRRRRWNGWGGIARL

Homology

[Close]

BLAST of IVF0013727 vs. ExPASy TrEMBL
Match: A0A5A7URF1 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold431G00330 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-18
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 2  DGRRRKRTGDGCVRRVKELKRRRRRTAWHWLREGSRGRADGGGDTNGGERMETAAPDDVG 61
          DGRRRKR  DGCVRRVK+LKRRRRRTAW WLREG RGRADGGGDTN GERMETAA     
Sbjct: 27 DGRRRKRADDGCVRRVKKLKRRRRRTAWRWLREGRRGRADGGGDTNRGERMETAAVGRCR 86

Query: 62 RRRRWNGWGGIAR 75
          +++R    GG++R
Sbjct: 87 KKKRMERLGGVSR 99

[Close]

BLAST of IVF0013727 vs. ExPASy TrEMBL
Match: A0A5A7U9S5 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G00860 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.9e-15
Identity = 49/70 (70.00%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 2  DGRRRKRTGDGCVRRVKELKRRRRRTAWHWLREGSRGRADGGGDTNGGERMETAAPDDVG 61
          DG+R KR  DG VRRVK+ KRRRRRTAW WLREGSRGRADGGGDTNGGERMETAA     
Sbjct: 6  DGKRCKRADDGSVRRVKKRKRRRRRTAWRWLREGSRGRADGGGDTNGGERMETAAVGRCR 65

Query: 62 RRRRWNGWGG 72
          ++++    GG
Sbjct: 66 KKKKMERLGG 75

[Close]

BLAST of IVF0013727 vs. NCBI nr
Match: KAA0056205.1 (uncharacterized protein E6C27_scaffold431G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (250), Expect = 2.36e-23
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 2  DGRRRKRTGDGCVRRVKELKRRRRRTAWHWLREGSRGRADGGGDTNGGERMETAAPDDVG 61
          DGRRRKR  DGCVRRVK+LKRRRRRTAW WLREG RGRADGGGDTN GERMETAA     
Sbjct: 27 DGRRRKRADDGCVRRVKKLKRRRRRTAWRWLREGRRGRADGGGDTNRGERMETAAVGRCR 86

Query: 62 RRRRWNGWGGIAR 74
          +++R    GG++R
Sbjct: 87 KKKRMERLGGVSR 99

[Close]

BLAST of IVF0013727 vs. NCBI nr
Match: KAA0050355.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 9.68e-20
Identity = 51/64 (79.69%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 2  DGRRRKRTGDGCVRRVKELKRRRRRTAWHWLREGSRGRADGGGDTNGGERMETAAPDDVG 61
          DG+R KR  DG VRRVK+ KRRRRRTAW WLREGSRGRADGGGDTNGGERMETAA   VG
Sbjct: 6  DGKRCKRADDGSVRRVKKRKRRRRRTAWRWLREGSRGRADGGGDTNGGERMETAA---VG 65

Query: 62 RRRR 65
          R R+
Sbjct: 66 RCRK 66

The following BLAST results are available for this feature:

BLAST of IVF0013727 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013727 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7URF1	1.4e-18	72.60	RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7U9S5	1.9e-15	70.00	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G008...	[more]

BLAST of IVF0013727 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056205.1	2.36e-23	72.60	uncharacterized protein E6C27_scaffold431G00330 [Cucumis melo var. makuwa]	[more]
KAA0050355.1	9.68e-20	79.69	protein Ycf2-like [Cucumis melo var. makuwa]	[more]

BLAST of IVF0013727 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013727.1	IVF0013727.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity