IVF0013720 (gene) Melon (IVF77) v1

Overview
NameIVF0013720
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCell division protein ftsH
Locationchr11: 11419441 .. 11419805 (+)
RNA-Seq ExpressionIVF0013720
SyntenyIVF0013720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCATAGAAGCAAAAGATGTCTAGGATTAGGGTTGAAACATATTAAATCAAACAAGGATGATCCAATTGTGATCGAGGATAATGCAAAGGTATATTTCTTAGTTTTTGAATGTGTATTTTAAATGGTATAAATCGTTAAACAAAAATATAATATGTATATATATGGTAGGAGGAAGTAAGATATGAAGAACCAGTTCAATACGAACCACTGCAAACTATATATCTAGAAGATTATGAACAAGAGTTAAGAGGACCTATAGGTACAAAGATTATGGTGTACCAGGATCAGAAGTTTGTGAAACCGAATGTGGACTTTGAAACACCGGAAGCAAAAATGGCAACACATGACAAAGAAAAATAG

mRNA sequence

ATGGTTCATAGAAGCAAAAGATGTCTAGGATTAGGGTTGAAACATATTAAATCAAACAAGGATGATCCAATTGTGATCGAGGATAATGCAAAGGAGGAAGTAAGATATGAAGAACCAGTTCAATACGAACCACTGCAAACTATATATCTAGAAGATTATGAACAAGAGTTAAGAGGACCTATAGGTACAAAGATTATGGTGTACCAGGATCAGAAGTTTGTGAAACCGAATGTGGACTTTGAAACACCGGAAGCAAAAATGGCAACACATGACAAAGAAAAATAG

Coding sequence (CDS)

ATGGTTCATAGAAGCAAAAGATGTCTAGGATTAGGGTTGAAACATATTAAATCAAACAAGGATGATCCAATTGTGATCGAGGATAATGCAAAGGAGGAAGTAAGATATGAAGAACCAGTTCAATACGAACCACTGCAAACTATATATCTAGAAGATTATGAACAAGAGTTAAGAGGACCTATAGGTACAAAGATTATGGTGTACCAGGATCAGAAGTTTGTGAAACCGAATGTGGACTTTGAAACACCGGAAGCAAAAATGGCAACACATGACAAAGAAAAATAG

Protein sequence

MVHRSKRCLGLGLKHIKSNKDDPIVIEDNAKEEVRYEEPVQYEPLQTIYLEDYEQELRGPIGTKIMVYQDQKFVKPNVDFETPEAKMATHDKEK
Homology
BLAST of IVF0013720 vs. ExPASy TrEMBL
Match: A0A5A7TIM3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00690 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.7e-32
Identity = 73/94 (77.66%), Postives = 82/94 (87.23%), Query Frame = 0

Query: 1  MVHRSKRCLGLGLKHIKSNKDDPIVIEDNAKEEVRYEEPVQYEPLQTIYLEDYEQELRGP 60
          MV RS+RCLGL LK IKSNKDDPIVI+DN +EEVRYEEP+QYEPLQTIYL+D EQELRGP
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60

Query: 61 IGTKIMVYQDQKFVKPNVDFETPEAKMATHDKEK 95
            T I+VYQ+QKFVK NV FETP+AKM  H+KEK
Sbjct: 61 TDTLIVVYQNQKFVKTNVVFETPKAKMPKHNKEK 94

BLAST of IVF0013720 vs. ExPASy TrEMBL
Match: A0A5D3E3X1 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00070 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.9e-21
Identity = 51/87 (58.62%), Postives = 72/87 (82.76%), Query Frame = 0

Query: 1  MVHRSKRCLGLGLKHIKSNKDDPIVIEDNAKEEVRYEEPVQYEPLQTIYLEDYEQELRGP 60
          MV RS+RCLG  LK IKS+KD+ I+IEDN +E++R EEP+ Y+P+Q IY +D E+EL+GP
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRNEEPLDYQPIQIIYPKDDEEELQGP 60

Query: 61 IGTKIMVYQDQKFVKPNVDFETPEAKM 88
           GT+I+VY D+KF++ ++ F+TPEAKM
Sbjct: 61 TGTQIVVYDDKKFMRTDMVFKTPEAKM 87

BLAST of IVF0013720 vs. ExPASy TrEMBL
Match: A0A5A7VKG5 (Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00090 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.8e-15
Identity = 47/92 (51.09%), Postives = 61/92 (66.30%), Query Frame = 0

Query: 1  MVHRSKRCLGLGLKHIKSNKDDPIVIEDNAKEEVRYEEPVQYEPLQTIYLEDYEQELRGP 60
          MV +S RCLG  +KH+KSNKDDPI+I D              E   T+Y  D E ELRGP
Sbjct: 1  MVRKSGRCLGSRMKHMKSNKDDPIMINDT-------------EVCGTVYKGDDEYELRGP 60

Query: 61 IGTKIMVYQDQKFVKPNVDFETPEAKMATHDK 93
            T+IM+Y+++K+VKP+V FETP+ KMA HD+
Sbjct: 61 TCTQIMLYEEKKYVKPDVVFETPKTKMAMHDR 79

BLAST of IVF0013720 vs. ExPASy TrEMBL
Match: A0A5A7SWP5 (Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G003940 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.6e-14
Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 0

Query: 28 DNAKEEVRYEEPVQYEPLQTIYLEDYEQELRGPIGTKIMVYQDQKFVKPNVDFETPEAKM 87
          D+ ++E RYEE + YEPLQ +Y  D E ELRGP GT+I++Y+++K+VKP+V FETPE KM
Sbjct: 3  DDIEDEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPETKM 62

Query: 88 ATHDK 93
           THD+
Sbjct: 63 PTHDR 67

BLAST of IVF0013720 vs. ExPASy TrEMBL
Match: A0A5D3E406 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00510 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.7e-13
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 0

Query: 29  NAKEEVRYEEPVQYEPLQTIYLEDYEQELRGPIGTKIMVYQDQKFVKPNVDFETPEAKMA 88
           N  +E RYEE + YEPLQ +Y  D E ELRGP GT+I++Y+++K+VKP+V FETPE KM 
Sbjct: 142 NRADEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPETKMP 201

Query: 89  THDK 93
           THD+
Sbjct: 202 THDR 205

BLAST of IVF0013720 vs. NCBI nr
Match: KAA0043162.1 (uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK12303.1 uncharacterized protein E5676_scaffold302G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 145 bits (365), Expect = 1.43e-42
Identity = 73/94 (77.66%), Postives = 82/94 (87.23%), Query Frame = 0

Query: 1  MVHRSKRCLGLGLKHIKSNKDDPIVIEDNAKEEVRYEEPVQYEPLQTIYLEDYEQELRGP 60
          MV RS+RCLGL LK IKSNKDDPIVI+DN +EEVRYEEP+QYEPLQTIYL+D EQELRGP
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60

Query: 61 IGTKIMVYQDQKFVKPNVDFETPEAKMATHDKEK 94
            T I+VYQ+QKFVK NV FETP+AKM  H+KEK
Sbjct: 61 TDTLIVVYQNQKFVKTNVVFETPKAKMPKHNKEK 94

BLAST of IVF0013720 vs. NCBI nr
Match: TYK30586.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (270), Expect = 4.13e-26
Identity = 51/87 (58.62%), Postives = 72/87 (82.76%), Query Frame = 0

Query: 1  MVHRSKRCLGLGLKHIKSNKDDPIVIEDNAKEEVRYEEPVQYEPLQTIYLEDYEQELRGP 60
          MV RS+RCLG  LK IKS+KD+ I+IEDN +E++R EEP+ Y+P+Q IY +D E+EL+GP
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRNEEPLDYQPIQIIYPKDDEEELQGP 60

Query: 61 IGTKIMVYQDQKFVKPNVDFETPEAKM 87
           GT+I+VY D+KF++ ++ F+TPEAKM
Sbjct: 61 TGTQIVVYDDKKFMRTDMVFKTPEAKM 87

BLAST of IVF0013720 vs. NCBI nr
Match: KAA0066916.1 (Cell division protein ftsH [Cucumis melo var. makuwa] >TYK30198.1 Cell division protein ftsH [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 1.31e-20
Identity = 47/92 (51.09%), Postives = 61/92 (66.30%), Query Frame = 0

Query: 1  MVHRSKRCLGLGLKHIKSNKDDPIVIEDNAKEEVRYEEPVQYEPLQTIYLEDYEQELRGP 60
          MV +S RCLG  +KH+KSNKDDPI+I D              E   T+Y  D E ELRGP
Sbjct: 1  MVRKSGRCLGSRMKHMKSNKDDPIMINDT-------------EVCGTVYKGDDEYELRGP 60

Query: 61 IGTKIMVYQDQKFVKPNVDFETPEAKMATHDK 92
            T+IM+Y+++K+VKP+V FETP+ KMA HD+
Sbjct: 61 TCTQIMLYEEKKYVKPDVVFETPKTKMAMHDR 79

BLAST of IVF0013720 vs. NCBI nr
Match: KAA0035692.1 (Cell division protein ftsH [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.68e-18
Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 0

Query: 28 DNAKEEVRYEEPVQYEPLQTIYLEDYEQELRGPIGTKIMVYQDQKFVKPNVDFETPEAKM 87
          D+ ++E RYEE + YEPLQ +Y  D E ELRGP GT+I++Y+++K+VKP+V FETPE KM
Sbjct: 3  DDIEDEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPETKM 62

Query: 88 ATHDK 92
           THD+
Sbjct: 63 PTHDR 67

BLAST of IVF0013720 vs. NCBI nr
Match: TYK30853.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 1.54e-17
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 0

Query: 29  NAKEEVRYEEPVQYEPLQTIYLEDYEQELRGPIGTKIMVYQDQKFVKPNVDFETPEAKMA 88
           N  +E RYEE + YEPLQ +Y  D E ELRGP GT+I++Y+++K+VKP+V FETPE KM 
Sbjct: 142 NRADEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPETKMP 201

Query: 89  THDK 92
           THD+
Sbjct: 202 THDR 205

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TIM34.7e-3277.66Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E3X14.9e-2158.62Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00... [more]
A0A5A7VKG51.8e-1551.09Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A5A7SWP57.6e-1458.46Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
A0A5D3E4061.7e-1359.38Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0043162.11.43e-4277.66uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK1... [more]
TYK30586.14.13e-2658.62protein Ycf2-like [Cucumis melo var. makuwa][more]
KAA0066916.11.31e-2051.09Cell division protein ftsH [Cucumis melo var. makuwa] >TYK30198.1 Cell division ... [more]
KAA0035692.11.68e-1858.46Cell division protein ftsH [Cucumis melo var. makuwa][more]
TYK30853.11.54e-1759.38retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0013720.1IVF0013720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051301 cell division