IVF0013681 (gene) Melon (IVF77) v1

Overview
NameIVF0013681
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr05: 17080262 .. 17080429 (-)
RNA-Seq ExpressionIVF0013681
SyntenyIVF0013681
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGCGAGGACGTTGACGACATGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACTTAGCCGAATTGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

mRNA sequence

ATGACATATTGCGAGGACGTTGACGACATGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACTTAGCCGAATTGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCGAGGACGTTGACGACATGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACTTAGCCGAATTGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

Protein sequence

MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA
Homology
BLAST of IVF0013681 vs. ExPASy TrEMBL
Match: A0A5A7U6D8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00620 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.2e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 56
           MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA
Sbjct: 242 MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 296

BLAST of IVF0013681 vs. ExPASy TrEMBL
Match: A0A5D3C8Z4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00530 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.2e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 56
           MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA
Sbjct: 235 MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 289

BLAST of IVF0013681 vs. ExPASy TrEMBL
Match: A0A5A7VK86 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001570 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.9e-21
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 56
           MTYCEDVDD+DEGDSTYATTTASEDIHYIETTNEWSQWRD+L E MFTDWQL NA
Sbjct: 246 MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 300

BLAST of IVF0013681 vs. ExPASy TrEMBL
Match: A0A5D3BDZ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00280 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.9e-21
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1  MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 56
          MTYC+D+DD+DEGDS YATTTASEDIHYIETTNEWSQWRD+LAE MFTDWQLRNA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

BLAST of IVF0013681 vs. ExPASy TrEMBL
Match: A0A5A7SL78 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00920 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.9e-21
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 56
           MTYCEDVDD DEGDSTYATTTASEDI YIETTNEWSQWRDDL ELMFT+WQLRNA
Sbjct: 175 MTYCEDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLTELMFTEWQLRNA 229

BLAST of IVF0013681 vs. NCBI nr
Match: TYK07648.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (296), Expect = 6.70e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 55
           MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA
Sbjct: 235 MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 289

BLAST of IVF0013681 vs. NCBI nr
Match: KAA0049907.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (296), Expect = 7.75e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 55
           MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA
Sbjct: 242 MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 296

BLAST of IVF0013681 vs. NCBI nr
Match: KAA0054051.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (273), Expect = 4.37e-30
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1  MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 55
          MTYC+D+DD+DEGDS YATTTASEDIHYIETTNEWSQWRD+LAE MFTDWQLRNA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

BLAST of IVF0013681 vs. NCBI nr
Match: TYK05336.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (272), Expect = 2.64e-29
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 55
           MTYCEDVDD DEGDSTYATTTASEDI YIETTNEWSQWRDDLAE MFTDWQLRN+
Sbjct: 53  MTYCEDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNS 107

BLAST of IVF0013681 vs. NCBI nr
Match: KAA0062284.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (267), Expect = 1.52e-28
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 55
           MTYC+D+DD DEGDSTYATTTASEDI YIETTNEWSQWRDDLAE MFT+WQLRNA
Sbjct: 53  MTYCDDIDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U6D86.2e-24100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C8Z46.2e-24100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VK862.9e-2190.91Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BDZ02.9e-2189.09Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SL782.9e-2192.73Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
TYK07648.16.70e-31100.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0049907.17.75e-31100.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0054051.14.37e-3089.09retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon p... [more]
TYK05336.12.64e-2992.73retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0062284.11.52e-2889.09retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0013681.1IVF0013681.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding