IVF0013665 (gene) Melon (IVF77) v1

Overview


Name	IVF0013665
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RING-H2 finger protein ATL18-like
Location	chr11: 14061695 .. 14062143 (-)
RNA-Seq Expression	IVF0013665
Synteny	IVF0013665

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGGTTTGTTTTACCTCGTTTCACCTATGCGATTCCCCATCCTTTTCTTCAGCACTTTTCTGTGGATTCCTCTTTTTCGTATGAAGCAAGCCATTCTGGGCGTTGTGGCTACTGTTTTTGGCCGGCCCTCCTCCCCACAACATGGAACTGACCTTGTGGTGGTCAGGTCATACGATGAGGATCATGGAGGATCGTCGGAGGAGATTTGCTCCATCTGTTTGACGGAGTTTGGAAGATCAGAAGATTCGGTGTGTAAATTACCGAATTGTGAGCATTTATTTCATTTCAATTGCATCCAGGAATGGATTGACAGGAATCGCTTCACTTGTCCCCTATGTAGATGCTTCTTCTTGGAAGACAACCACAAGATGGACACCAAGTGGAGATTCCTCGTTCCTGATAATCCTTCCTCTCTCTATTACTTCCTGCAATGATTTGATCCTCT

mRNA sequence

ATGTTAGGTTTGTTTTACCTCGTTTCACCTATGCGATTCCCCATCCTTTTCTTCAGCACTTTTCTGTGGATTCCTCTTTTTCGTATGAAGCAAGCCATTCTGGGCGTTGTGGCTACTGTTTTTGGCCGGCCCTCCTCCCCACAACATGGAACTGACCTTGTGGTGGTCAGGTCATACGATGAGGATCATGGAGGATCGTCGGAGGAGATTTGCTCCATCTGTTTGACGGAGTTTGGAAGATCAGAAGATTCGGTGTGTAAATTACCGAATTGTGAGCATTTATTTCATTTCAATTGCATCCAGGAATGGATTGACAGGAATCGCTTCACTTGTCCCCTATGTAGATGCTTCTTCTTGGAAGACAACCACAAGATGGACACCAAGTGGAGATTCCTCGTTCCTGATAATCCTTCCTCTCTCTATTACTTCCTGCAATGATTTGATCCTCT

Coding sequence (CDS)

ATGTTAGGTTTGTTTTACCTCGTTTCACCTATGCGATTCCCCATCCTTTTCTTCAGCACTTTTCTGTGGATTCCTCTTTTTCGTATGAAGCAAGCCATTCTGGGCGTTGTGGCTACTGTTTTTGGCCGGCCCTCCTCCCCACAACATGGAACTGACCTTGTGGTGGTCAGGTCATACGATGAGGATCATGGAGGATCGTCGGAGGAGATTTGCTCCATCTGTTTGACGGAGTTTGGAAGATCAGAAGATTCGGTGTGTAAATTACCGAATTGTGAGCATTTATTTCATTTCAATTGCATCCAGGAATGGATTGACAGGAATCGCTTCACTTGTCCCCTATGTAGATGCTTCTTCTTGGAAGACAACCACAAGATGGACACCAAGTGGAGATTCCTCGTTCCTGATAATCCTTCCTCTCTCTATTACTTCCTGCAATGA

Protein sequence

MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGRPSSPQHGTDLVVVRSYDEDHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFLEDNHKMDTKWRFLVPDNPSSLYYFLQ

Homology

[Close]

BLAST of IVF0013665 vs. ExPASy Swiss-Prot
Match: Q9SZL4 (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.7e-12
Identity = 47/120 (39.17%), Postives = 63/120 (52.50%), Query Frame = 0


Query: 1   MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGRPSSPQHGTDLVVVRSYD 60
           M+ + +  SP+    + F T + IPL R+K+             +    G +LV V   D
Sbjct: 1   MISMLFPRSPLCTAAIVFYTCVCIPLGRLKK-------NGGDADAHDDDGYNLVGVMFGD 60

Query: 61  EDHGGSSEEI-CSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFL 120
           ++     EEI C ICL EF  +ED+V  LP C HLFH NCI+ W+ R   TCPLCR F L
Sbjct: 61  KE---KEEEICCPICLVEF-EAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRSFVL 109

[Close]

BLAST of IVF0013665 vs. ExPASy Swiss-Prot
Match: Q9SUS5 (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-09
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 68  EEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWI-DRNRFTCPLCRCFFLEDNHKMD 127
           E+ C++CL++F  S+D + +LP C H+FH  C+  WI D N+ TCP+CR  FL +     
Sbjct: 82  EDCCTVCLSDF-VSDDKIRQLPKCGHVFHHRCLDRWIVDCNKITCPICRNRFLPEEKSTP 141

Query: 128 TKW 130
             W
Sbjct: 142 FDW 143

[Close]

BLAST of IVF0013665 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-08
Identity = 27/72 (37.50%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 52  DLVVVRSYDE--DHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRF 111
           +++ V  ++E  + G    E C++CL EF   E  +  L NC H+FH +C+  W+D ++ 
Sbjct: 73  EILPVIKFEELTNSGEDLPENCAVCLYEF-EGEQEIRWLRNCRHIFHRSCLDRWMDHDQK 132

Query: 112 TCPLCRCFFLED 122
           TCPLCR  F+ D
Sbjct: 133 TCPLCRTPFVPD 143

[Close]

BLAST of IVF0013665 vs. ExPASy Swiss-Prot
Match: Q8GW38 (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.1e-08
Identity = 29/75 (38.67%), Postives = 38/75 (50.67%), Query Frame = 0


Query: 52  DLVVVRSYDEDHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTC 111
           D + V  Y E  G      C++CL EF   +D +  LPNC H FH +CI  W+  N  TC
Sbjct: 125 DALPVFLYKEIKGTKEPFDCAVCLCEFS-EDDKLRLLPNCSHAFHIDCIDTWLLSNS-TC 184

Query: 112 PLCRCFFLEDNHKMD 127
           PLCR       H+ +
Sbjct: 185 PLCRGTLFSLGHQFE 197

[Close]

BLAST of IVF0013665 vs. ExPASy Swiss-Prot
Match: Q9SUS4 (Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RHA1A PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.2e-08
Identity = 36/130 (27.69%), Postives = 60/130 (46.15%), Query Frame = 0


Query: 1   MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGRPSSPQHGTDLVVVRSYD 60
           +L + Y++   R  +     ++ +P F           T     +S     +L+ V  + 
Sbjct: 17  ILKILYVIGFFRDIVDALCPYIGLPRFLDHNETSAPDLTRHALSTSASLANELIPVVRF- 76

Query: 61  EDHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWI-DRNRFTCPLCRCFFL 120
            D     E+ C++CL++F  S+D V +LP C H+FH  C+  WI D N+  CP+CR  FL
Sbjct: 77  SDLPTDPEDCCTVCLSDF-ESDDKVRQLPKCGHVFHHYCLDRWIVDYNKMKCPVCRHRFL 136

Query: 121 EDNHKMDTKW 130
                  + W
Sbjct: 137 PKEKYTQSDW 144

[Close]

BLAST of IVF0013665 vs. ExPASy TrEMBL
Match: A0A5D3BPT9 (RING-H2 finger protein ATL18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00740 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.0e-81
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGRPSSPQHGTDLVVVRSYD 60
           MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGRPSSPQHGTDLVVVRSYD
Sbjct: 1   MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGRPSSPQHGTDLVVVRSYD 60

Query: 61  EDHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFLE 120
           EDHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFLE
Sbjct: 61  EDHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFLE 120

Query: 121 DNHKMDTKWRFLVPDNPSSLYYFLQ 146
           DNHKMDTKWRFLVPDNPSSLYYFLQ
Sbjct: 121 DNHKMDTKWRFLVPDNPSSLYYFLQ 145

[Close]

BLAST of IVF0013665 vs. ExPASy TrEMBL
Match: A0A5A7TXY0 (RING-H2 finger protein ATL18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00410 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 6.5e-81
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGRPSSPQHGTDLVVVRSYD 60
           MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFG PSSPQHGTDLVVVRSYD
Sbjct: 1   MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGLPSSPQHGTDLVVVRSYD 60

Query: 61  EDHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFLE 120
           EDHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFLE
Sbjct: 61  EDHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFLE 120

Query: 121 DNHKMDTKWRFLVPDNPSSLYYFLQ 146
           DNHKMDTKWRFLVPDNPSSLYYFLQ
Sbjct: 121 DNHKMDTKWRFLVPDNPSSLYYFLQ 145

[Close]

BLAST of IVF0013665 vs. ExPASy TrEMBL
Match: A0A0A0KFW5 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G117180 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.0e-67
Identity = 124/136 (91.18%), Postives = 128/136 (94.12%), Query Frame = 0


Query: 11  MRFPILFFSTFLWIPLFRMKQAILGVVATVFGRPSSPQHGTDLVVVRSYDEDHGGSSEEI 70
           MRFPILFF+TFLWIPLFR+ QAILGVVATVFG PSSP+HGTDL+VVRSYDED GGSSEEI
Sbjct: 1   MRFPILFFNTFLWIPLFRINQAILGVVATVFGLPSSPEHGTDLLVVRSYDED-GGSSEEI 60

Query: 71  CSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRC-FFLEDNHKMDTKW 130
           CSICLTEFGRS DSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRC FF EDN KMDTKW
Sbjct: 61  CSICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFFFEDNRKMDTKW 120

Query: 131 RFLVPDNPSSLYYFLQ 146
            FLVPDNPSSLYYFLQ
Sbjct: 121 SFLVPDNPSSLYYFLQ 135

[Close]

BLAST of IVF0013665 vs. ExPASy TrEMBL
Match: A0A6J1FTE6 (RING-H2 finger protein ATL18-like OS=Cucurbita moschata OX=3662 GN=LOC111448616 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 7.3e-40
Identity = 90/152 (59.21%), Postives = 113/152 (74.34%), Query Frame = 0


Query: 1   MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGRPSSPQHGTD---LVVVR 60
           MLGL +L S +   I+FF+TF+WIPLFR+K+AILG VA+VF   S P+  +     ++VR
Sbjct: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILG-VASVFRLVSLPEMDSSRGGTLLVR 60

Query: 61  SYDE----DHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPL 120
            Y+E    D     EE+CSICLTEF R EDSVCKLP+C H+FHF+CI++W +RNRFTCPL
Sbjct: 61  RYEELQRSDDRAEEEEMCSICLTEFAR-EDSVCKLPDCAHVFHFDCIEKWHERNRFTCPL 120

Query: 121 CRCFFLEDNHKMDTKWRFLVPDNPSSLYYFLQ 146
           CRCFF  + H  + K RF+VPDNPSSLYYFLQ
Sbjct: 121 CRCFFNIEKHH-EKKLRFVVPDNPSSLYYFLQ 149

[Close]

BLAST of IVF0013665 vs. ExPASy TrEMBL
Match: A0A6J1G855 (E3 ubiquitin-protein ligase ATL41-like OS=Cucurbita moschata OX=3662 GN=LOC111451622 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.2e-31
Identity = 72/137 (52.55%), Postives = 96/137 (70.07%), Query Frame = 0


Query: 15  ILFFSTFLWIPLFRMKQAILGVVAT--VFGRPSSPQHGTDLVVVRSYDE---DHGGSSEE 74
           I FF+T++WIPL R+K AI+G V+   +   P S       ++VR Y+E       + EE
Sbjct: 94  ISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEE 153

Query: 75  ICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFLED-NHKMDTK 134
           ICSICL EF R  DSVC LP+C H+FHF+CI++W++RNRFTCPLCRCFF  +  ++ + K
Sbjct: 154 ICSICLMEFARG-DSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRHERK 213

Query: 135 WRFLVPDNPSSLYYFLQ 146
            +F+VPDNPS LYYFLQ
Sbjct: 214 LQFVVPDNPSCLYYFLQ 229

[Close]

BLAST of IVF0013665 vs. NCBI nr
Match: TYK01060.1 (RING-H2 finger protein ATL18-like [Cucumis melo var. makuwa])

HSP 1 Score: 311 bits (796), Expect = 4.73e-107
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGRPSSPQHGTDLVVVRSYD 60
           MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGRPSSPQHGTDLVVVRSYD
Sbjct: 1   MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGRPSSPQHGTDLVVVRSYD 60

Query: 61  EDHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFLE 120
           EDHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFLE
Sbjct: 61  EDHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFLE 120

Query: 121 DNHKMDTKWRFLVPDNPSSLYYFLQ 145
           DNHKMDTKWRFLVPDNPSSLYYFLQ
Sbjct: 121 DNHKMDTKWRFLVPDNPSSLYYFLQ 145

[Close]

BLAST of IVF0013665 vs. NCBI nr
Match: KAA0047798.1 (RING-H2 finger protein ATL18-like [Cucumis melo var. makuwa])

HSP 1 Score: 308 bits (789), Expect = 5.54e-106
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGRPSSPQHGTDLVVVRSYD 60
           MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFG PSSPQHGTDLVVVRSYD
Sbjct: 1   MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGLPSSPQHGTDLVVVRSYD 60

Query: 61  EDHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFLE 120
           EDHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFLE
Sbjct: 61  EDHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFLE 120

Query: 121 DNHKMDTKWRFLVPDNPSSLYYFLQ 145
           DNHKMDTKWRFLVPDNPSSLYYFLQ
Sbjct: 121 DNHKMDTKWRFLVPDNPSSLYYFLQ 145

[Close]

BLAST of IVF0013665 vs. NCBI nr
Match: XP_022944066.1 (RING-H2 finger protein ATL18-like [Cucurbita moschata] >KAG6570951.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172 bits (435), Expect = 5.57e-52
Identity = 90/152 (59.21%), Postives = 113/152 (74.34%), Query Frame = 0


Query: 1   MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGRPSSPQHGTD---LVVVR 60
           MLGL +L S +   I+FF+TF+WIPLFR+K+AILG VA+VF   S P+  +     ++VR
Sbjct: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILG-VASVFRLVSLPEMDSSRGGTLLVR 60

Query: 61  SYDE----DHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPL 120
            Y+E    D     EE+CSICLTEF R EDSVCKLP+C H+FHF+CI++W +RNRFTCPL
Sbjct: 61  RYEELQRSDDRAEEEEMCSICLTEFAR-EDSVCKLPDCAHVFHFDCIEKWHERNRFTCPL 120

Query: 121 CRCFFLEDNHKMDTKWRFLVPDNPSSLYYFLQ 145
           CRCFF  + H  + K RF+VPDNPSSLYYFLQ
Sbjct: 121 CRCFFNIEKHH-EKKLRFVVPDNPSSLYYFLQ 149

[Close]

BLAST of IVF0013665 vs. NCBI nr
Match: XP_023512248.1 (RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171 bits (434), Expect = 7.90e-52
Identity = 90/152 (59.21%), Postives = 113/152 (74.34%), Query Frame = 0


Query: 1   MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGRPSSPQHGTD---LVVVR 60
           MLGL +L S +   I+FF+TF+WIPLFR+K+AILG VA+VF   S P+  +     ++VR
Sbjct: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILG-VASVFRLASLPEMDSSRGGTLLVR 60

Query: 61  SYDE----DHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPL 120
            Y+E    D     EE+CSICLTEF R EDSVCKLP+C H+FHF+CI++W +RNRFTCPL
Sbjct: 61  RYEELQRSDDRTEEEEMCSICLTEFAR-EDSVCKLPDCAHVFHFDCIEKWHERNRFTCPL 120

Query: 121 CRCFFLEDNHKMDTKWRFLVPDNPSSLYYFLQ 145
           CRCFF  + H  + K RF+VPDNPSSLYYFLQ
Sbjct: 121 CRCFFNIEKHH-ERKLRFVVPDNPSSLYYFLQ 149

[Close]

BLAST of IVF0013665 vs. NCBI nr
Match: KAG7010790.1 (RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171 bits (433), Expect = 1.12e-51
Identity = 89/152 (58.55%), Postives = 113/152 (74.34%), Query Frame = 0


Query: 1   MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGRPSSPQHGTD---LVVVR 60
           MLGL +L S +   I+FF+TF+WIPLFR+K+AILG +A+VF   S P+  +     ++VR
Sbjct: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILG-IASVFRLASLPEMDSSRGGTLLVR 60

Query: 61  SYDE----DHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPL 120
            Y+E    D     EE+CSICLTEF R EDSVCKLP+C H+FHF+CI++W +RNRFTCPL
Sbjct: 61  RYEELQRSDDRTEEEEMCSICLTEFAR-EDSVCKLPDCAHVFHFDCIEKWHERNRFTCPL 120

Query: 121 CRCFFLEDNHKMDTKWRFLVPDNPSSLYYFLQ 145
           CRCFF  + H  + K RF+VPDNPSSLYYFLQ
Sbjct: 121 CRCFFNIEKHH-EKKLRFVVPDNPSSLYYFLQ 149

[Close]

BLAST of IVF0013665 vs. TAIR 10
Match: AT4G38140.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 3.4e-13
Identity = 47/120 (39.17%), Postives = 63/120 (52.50%), Query Frame = 0


Query: 1   MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGRPSSPQHGTDLVVVRSYD 60
           M+ + +  SP+    + F T + IPL R+K+             +    G +LV V   D
Sbjct: 1   MISMLFPRSPLCTAAIVFYTCVCIPLGRLKK-------NGGDADAHDDDGYNLVGVMFGD 60

Query: 61  EDHGGSSEEI-CSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFL 120
           ++     EEI C ICL EF  +ED+V  LP C HLFH NCI+ W+ R   TCPLCR F L
Sbjct: 61  KE---KEEEICCPICLVEF-EAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRSFVL 109

[Close]

BLAST of IVF0013665 vs. TAIR 10
Match: AT5G37250.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 4.1e-11
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 62  DHGGSSEEICSICLTEFGRS-EDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCR 116
           D G   E  CSICL +F  S +D++  LP+C HLFH NCI EW+ R R +CPLCR
Sbjct: 128 DLGDEEETTCSICLEDFSESHDDNIILLPDCFHLFHQNCIFEWLKRQR-SCPLCR 181

[Close]

BLAST of IVF0013665 vs. TAIR 10
Match: AT4G11360.1 (RING-H2 finger A1B )

HSP 1 Score: 64.3 bits (155), Expect = 9.2e-11
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 68  EEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWI-DRNRFTCPLCRCFFLEDNHKMD 127
           E+ C++CL++F  S+D + +LP C H+FH  C+  WI D N+ TCP+CR  FL +     
Sbjct: 82  EDCCTVCLSDF-VSDDKIRQLPKCGHVFHHRCLDRWIVDCNKITCPICRNRFLPEEKSTP 141

Query: 128 TKW 130
             W
Sbjct: 142 FDW 143

[Close]

BLAST of IVF0013665 vs. TAIR 10
Match: AT5G37270.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-10
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 62  DHGGSSEEICSICLTEFGRS-EDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCR 116
           D G   E  CSICL +F  S +D++  LP+C HLFH +CI EW+ R R +CPLCR
Sbjct: 144 DLGDEEETTCSICLEDFSESHDDNIILLPDCFHLFHQSCIFEWLKRQR-SCPLCR 197

[Close]

BLAST of IVF0013665 vs. TAIR 10
Match: AT5G41400.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-10
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 65  GSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEW-IDRNRFTCPLCRCFFLED 122
           GS  + C++CL EF  ++D + +L NC+H+FH +C+  W +  N+ TCPLCR  F+ D
Sbjct: 99  GSGSDCCAVCLHEF-ENDDEIRRLTNCQHIFHRSCLDRWMMGYNQMTCPLCRTPFISD 155

The following BLAST results are available for this feature:

BLAST of IVF0013665 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL4	4.7e-12	39.17	RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1	[more]
Q9SUS5	1.3e-09	41.27	E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 ...	[more]
Q9XF92	2.4e-08	37.50	Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH...	[more]
Q8GW38	7.1e-08	38.67	RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1	[more]
Q9SUS4	9.2e-08	27.69	Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]

BLAST of IVF0013665 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BPT9	1.0e-81	100.00	RING-H2 finger protein ATL18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TXY0	6.5e-81	99.31	RING-H2 finger protein ATL18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A0A0KFW5	7.0e-67	91.18	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G117180 P...	[more]
A0A6J1FTE6	7.3e-40	59.21	RING-H2 finger protein ATL18-like OS=Cucurbita moschata OX=3662 GN=LOC111448616 ...	[more]
A0A6J1G855	1.2e-31	52.55	E3 ubiquitin-protein ligase ATL41-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of IVF0013665 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01060.1	4.73e-107	100.00	RING-H2 finger protein ATL18-like [Cucumis melo var. makuwa]	[more]
KAA0047798.1	5.54e-106	99.31	RING-H2 finger protein ATL18-like [Cucumis melo var. makuwa]	[more]
XP_022944066.1	5.57e-52	59.21	RING-H2 finger protein ATL18-like [Cucurbita moschata] >KAG6570951.1 RING-H2 fin...	[more]
XP_023512248.1	7.90e-52	59.21	RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo]	[more]
KAG7010790.1	1.12e-51	58.55	RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]

BLAST of IVF0013665 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38140.1	3.4e-13	39.17	RING/U-box superfamily protein	[more]
AT5G37250.1	4.1e-11	54.55	RING/U-box superfamily protein	[more]
AT4G11360.1	9.2e-11	41.27	RING-H2 finger A1B	[more]
AT5G37270.1	1.6e-10	52.73	RING/U-box superfamily protein	[more]
AT5G41400.1	2.0e-10	43.10	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 71..114 e-value: 3.2E-6 score: 36.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 70..115 e-value: 1.2E-11 score: 44.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 71..115 score: 12.622055
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 50..118 e-value: 3.2E-16 score: 60.3
None	No IPR available	PANTHER	PTHR45969	RING ZINC FINGER PROTEIN-RELATED	coord: 6..119
None	No IPR available	PANTHER	PTHR45969:SF9	ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN	coord: 6..119
None	No IPR available	CDD	cd16448	RING-H2	coord: 71..115 e-value: 6.59855E-13 score: 57.4619
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 66..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013665.2	IVF0013665.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane