IVF0013637 (gene) Melon (IVF77) v1

Overview


Name	IVF0013637
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ATP synthase subunit alpha
Location	chr07: 3962732 .. 3962917 (-)
RNA-Seq Expression	IVF0013637
Synteny	IVF0013637

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGGGCATGTGGTCGACGCCTTGGGAGCACCCATTGATGGAAGAGGGGCTCTCAGCGATCTCGAGCGAAGACGTGTCAAAGTGAAAGCCTCTAGGATTATTGAATGTAAATCAGTGCACGAGCCTATGCAAACAGGGTTAAAAGCGGTGGATAGCCTGGTTCCTATAGACCGAGGCCAATGA

mRNA sequence

ATGCTCGGGCATGTGGTCGACGCCTTGGGAGCACCCATTGATGGAAGAGGGGCTCTCAGCGATCTCGAGCGAAGACGTGTCAAAGTGAAAGCCTCTAGGATTATTGAATGTAAATCAGTGCACGAGCCTATGCAAACAGGGTTAAAAGCGGTGGATAGCCTGGTTCCTATAGACCGAGGCCAATGA

Coding sequence (CDS)

ATGCTCGGGCATGTGGTCGACGCCTTGGGAGCACCCATTGATGGAAGAGGGGCTCTCAGCGATCTCGAGCGAAGACGTGTCAAAGTGAAAGCCTCTAGGATTATTGAATGTAAATCAGTGCACGAGCCTATGCAAACAGGGTTAAAAGCGGTGGATAGCCTGGTTCCTATAGACCGAGGCCAATGA

Protein sequence

MLGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRGQ

Homology

[Close]

BLAST of IVF0013637 vs. ExPASy Swiss-Prot
Match: Q06735 (ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris OX=161934 GN=ATPA PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.4e-21
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1   MLGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 60
           MLG VVDALG PIDGRGALSD ERRRV+VKA  IIE KSVHEPMQTGLKAVDSLVPI RG
Sbjct: 105 MLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRG 164

Query: 61  Q 62
           Q
Sbjct: 165 Q 165

[Close]

BLAST of IVF0013637 vs. ExPASy Swiss-Prot
Match: P18260 (ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus OX=4232 GN=ATPA PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.4e-21
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1   MLGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 60
           MLG VVDALG PIDGRGALSD ERRRV+VKA  IIE KSVHEPMQTGLKAVDSLVPI RG
Sbjct: 105 MLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRG 164

Query: 61  Q 62
           Q
Sbjct: 165 Q 165

[Close]

BLAST of IVF0013637 vs. ExPASy Swiss-Prot
Match: P05493 (ATP synthase subunit alpha, mitochondrial OS=Pisum sativum OX=3888 GN=ATPA PE=3 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 1.4e-21
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1   MLGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 60
           MLG VVDALG PIDGRGALSD ERRRV+VKA  IIE KSVHEPMQTGLKAVDSLVPI RG
Sbjct: 105 MLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRG 164

Query: 61  Q 62
           Q
Sbjct: 165 Q 165

[Close]

BLAST of IVF0013637 vs. ExPASy Swiss-Prot
Match: P24459 (ATP synthase subunit alpha, mitochondrial OS=Phaseolus vulgaris OX=3885 GN=ATPA PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.4e-21
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1   MLGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 60
           MLG VVDALG PIDGRGALSD ERRRV+VKA  IIE KSVHEPMQTGLKAVDSLVPI RG
Sbjct: 105 MLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRG 164

Query: 61  Q 62
           Q
Sbjct: 165 Q 165

[Close]

BLAST of IVF0013637 vs. ExPASy Swiss-Prot
Match: Q01915 (ATP synthase subunit alpha, mitochondrial OS=Glycine max OX=3847 GN=ATPA PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.4e-21
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1   MLGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 60
           MLG VVDALG PIDGRGALSD ERRRV+VKA  IIE KSVHEPMQTGLKAVDSLVPI RG
Sbjct: 105 MLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRG 164

Query: 61  Q 62
           Q
Sbjct: 165 Q 165

[Close]

BLAST of IVF0013637 vs. ExPASy TrEMBL
Match: A0A5A7VNJ5 (ATPase subunit 1 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002040 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.8e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   MLGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 60
           MLGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG
Sbjct: 260 MLGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 319

Query: 61  Q 62
           Q
Sbjct: 320 Q 320

[Close]

BLAST of IVF0013637 vs. ExPASy TrEMBL
Match: A0A5D3DVZ5 (ATPase subunit 1 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001980 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-24
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   MLGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 60
           MLGHVV+ALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG
Sbjct: 260 MLGHVVNALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 319

Query: 61  Q 62
           Q
Sbjct: 320 Q 320

[Close]

BLAST of IVF0013637 vs. ExPASy TrEMBL
Match: A0A3B6C5R9 (ATP synthase subunit alpha OS=Triticum aestivum OX=4565 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.6e-20
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   MLGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 60
           MLG VVDALG PIDG+GALSD ERRRV+VKA  IIECKSVHEPMQTGLKAVDSLVPI RG
Sbjct: 105 MLGRVVDALGVPIDGKGALSDHERRRVEVKAPGIIECKSVHEPMQTGLKAVDSLVPIGRG 164

Query: 61  Q 62
           Q
Sbjct: 165 Q 165

[Close]

BLAST of IVF0013637 vs. ExPASy TrEMBL
Match: A0A3B6ING1 (ATP-synt_ab_N domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.0e-20
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   MLGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 60
           MLG VVDALG PIDG+GALSD ERRRV+VKA  IIECKSVHEPMQTGLKAVDSLVPI RG
Sbjct: 88  MLGRVVDALGVPIDGKGALSDHERRRVEVKAPWIIECKSVHEPMQTGLKAVDSLVPIGRG 147

Query: 61  Q 62
           Q
Sbjct: 148 Q 148

[Close]

BLAST of IVF0013637 vs. ExPASy TrEMBL
Match: K9N0G2 (ATPase subunit 1 (Fragment) OS=Eleusine coracana OX=4511 GN=ATP1 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.7e-19
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   MLGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 60
           MLG VVDALGAPIDGRGALSD ERRRV+VKA  IIE KSVHEPMQTGLKAVDSLVPI RG
Sbjct: 105 MLGRVVDALGAPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRG 164

Query: 61  Q 62
           Q
Sbjct: 165 Q 165

[Close]

BLAST of IVF0013637 vs. NCBI nr
Match: KAA0066839.1 (ATPase subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (307), Expect = 3.77e-32
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   MLGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 60
           MLGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG
Sbjct: 260 MLGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 319

[Close]

BLAST of IVF0013637 vs. NCBI nr
Match: TYK27987.1 (ATPase subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (302), Expect = 2.08e-31
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   MLGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 60
           MLGHVV+ALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG
Sbjct: 260 MLGHVVNALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 319

[Close]

BLAST of IVF0013637 vs. NCBI nr
Match: KAF7048695.1 (hypothetical protein CFC21_057398 [Triticum aestivum] >KAF7048698.1 hypothetical protein CFC21_057401 [Triticum aestivum] >KAF7048701.1 hypothetical protein CFC21_057404 [Triticum aestivum])

HSP 1 Score: 105 bits (261), Expect = 5.14e-27
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   MLGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 60
           MLG VVDALG PIDG+GALSD ERRRV+VKA  IIECKSVHEPMQTGLKAVDSLVPI RG
Sbjct: 88  MLGRVVDALGVPIDGKGALSDHERRRVEVKAPWIIECKSVHEPMQTGLKAVDSLVPIGRG 147

[Close]

BLAST of IVF0013637 vs. NCBI nr
Match: OQU84776.1 (hypothetical protein SORBI_3004G120150 [Sorghum bicolor])

HSP 1 Score: 100 bits (250), Expect = 3.28e-26
Identity = 52/61 (85.25%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1  MLGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 60
          MLG VVDALG PIDG+GALSD ERRRVKVKA  IIE KSVHEPMQTGLK VDSLVPI RG
Sbjct: 1  MLGRVVDALGVPIDGKGALSDHERRRVKVKAPGIIERKSVHEPMQTGLKVVDSLVPIGRG 60

[Close]

BLAST of IVF0013637 vs. NCBI nr
Match: TMW81896.1 (hypothetical protein EJD97_007445, partial [Solanum chilense])

HSP 1 Score: 103 bits (256), Expect = 4.53e-26
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1   MLGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 60
           MLG VVD LG PIDGRGALSD ERRRV+VKA RIIE KSVHEPMQTGLKAVDSLVPI RG
Sbjct: 97  MLGRVVDGLGVPIDGRGALSDHERRRVEVKAPRIIERKSVHEPMQTGLKAVDSLVPIGRG 156

[Close]

BLAST of IVF0013637 vs. TAIR 10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein )

HSP 1 Score: 98.6 bits (244), Expect = 1.8e-21
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1   MLGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 60
           MLG VVDA+G PIDG+GALSD E+RRV+VKA  I+E KSVHEPMQTGLKAVDSLVPI RG
Sbjct: 375 MLGRVVDAMGVPIDGKGALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRG 434

Query: 61  Q 62
           Q
Sbjct: 435 Q 435

[Close]

BLAST of IVF0013637 vs. TAIR 10
Match: ATMG01190.1 (ATP synthase subunit 1 )

HSP 1 Score: 98.6 bits (244), Expect = 1.8e-21
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1   MLGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 60
           MLG VVDA+G PIDG+GALSD E+RRV+VKA  I+E KSVHEPMQTGLKAVDSLVPI RG
Sbjct: 105 MLGRVVDAMGVPIDGKGALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRG 164

Query: 61  Q 62
           Q
Sbjct: 165 Q 165

[Close]

BLAST of IVF0013637 vs. TAIR 10
Match: ATCG00120.1 (ATP synthase subunit alpha )

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-12
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 2   LGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRGQ 61
           LG V++AL  PIDGRG +S  E R ++  A  II  +SV+EP+QTGL A+DS++PI RGQ
Sbjct: 105 LGRVINALANPIDGRGKISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQ 164

[Close]

BLAST of IVF0013637 vs. TAIR 10
Match: AT5G08670.1 (ATP synthase alpha/beta family protein )

HSP 1 Score: 42.0 bits (97), Expect = 2.0e-04
Identity = 20/59 (33.90%), Postives = 31/59 (52.54%), Query Frame = 0


Query: 2   LGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 61
           LG +++ LG PID RG +       +   A  +++  +  E + TG+K VD L P  RG
Sbjct: 166 LGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRG 224

[Close]

BLAST of IVF0013637 vs. TAIR 10
Match: AT5G08680.1 (ATP synthase alpha/beta family protein )

HSP 1 Score: 42.0 bits (97), Expect = 2.0e-04
Identity = 20/59 (33.90%), Postives = 31/59 (52.54%), Query Frame = 0


Query: 2   LGHVVDALGAPIDGRGALSDLERRRVKVKASRIIECKSVHEPMQTGLKAVDSLVPIDRG 61
           LG +++ LG PID RG +       +   A  +++  +  E + TG+K VD L P  RG
Sbjct: 169 LGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRG 227

The following BLAST results are available for this feature:

BLAST of IVF0013637 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q06735	1.4e-21	86.89	ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris OX=161934 GN=ATPA PE=...	[more]
P18260	1.4e-21	86.89	ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus OX=4232 GN=ATPA P...	[more]
P05493	1.4e-21	86.89	ATP synthase subunit alpha, mitochondrial OS=Pisum sativum OX=3888 GN=ATPA PE=3 ...	[more]
P24459	1.4e-21	86.89	ATP synthase subunit alpha, mitochondrial OS=Phaseolus vulgaris OX=3885 GN=ATPA ...	[more]
Q01915	1.4e-21	86.89	ATP synthase subunit alpha, mitochondrial OS=Glycine max OX=3847 GN=ATPA PE=3 SV...	[more]

BLAST of IVF0013637 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VNJ5	2.8e-25	100.00	ATPase subunit 1 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3DVZ5	1.1e-24	98.36	ATPase subunit 1 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A3B6C5R9	4.6e-20	86.89	ATP synthase subunit alpha OS=Triticum aestivum OX=4565 PE=3 SV=1	[more]
A0A3B6ING1	6.0e-20	86.89	ATP-synt_ab_N domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1	[more]
K9N0G2	1.7e-19	88.52	ATPase subunit 1 (Fragment) OS=Eleusine coracana OX=4511 GN=ATP1 PE=3 SV=1	[more]

BLAST of IVF0013637 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066839.1	3.77e-32	100.00	ATPase subunit 1 [Cucumis melo var. makuwa]	[more]
TYK27987.1	2.08e-31	98.36	ATPase subunit 1 [Cucumis melo var. makuwa]	[more]
KAF7048695.1	5.14e-27	86.89	hypothetical protein CFC21_057398 [Triticum aestivum] >KAF7048698.1 hypothetical...	[more]
OQU84776.1	3.28e-26	85.25	hypothetical protein SORBI_3004G120150 [Sorghum bicolor]	[more]
TMW81896.1	4.53e-26	86.89	hypothetical protein EJD97_007445, partial [Solanum chilense]	[more]

BLAST of IVF0013637 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07698.1	1.8e-21	80.33	ATPase, F1 complex, alpha subunit protein	[more]
ATMG01190.1	1.8e-21	80.33	ATP synthase subunit 1	[more]
ATCG00120.1	1.6e-12	55.00	ATP synthase subunit alpha	[more]
AT5G08670.1	2.0e-04	33.90	ATP synthase alpha/beta family protein	[more]
AT5G08680.1	2.0e-04	33.90	ATP synthase alpha/beta family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.12240		coord: 1..61 e-value: 1.1E-18 score: 69.3
None	No IPR available	PANTHER	PTHR48082	ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL	coord: 1..61
None	No IPR available	PANTHER	PTHR48082:SF2	ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL	coord: 1..61
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013637.1	IVF0013637.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0031090	organelle membrane
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism