IVF0013617 (gene) Melon (IVF77) v1

Overview


Name	IVF0013617
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr11: 22979342 .. 22979614 (+)
RNA-Seq Expression	IVF0013617
Synteny	IVF0013617

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGTCGTAGCAAGTTCCAGTTTCTCTTCAATTTCTCCATTGATATTTGATGGAGACAACTACCAAGTTTGGGCAGTTCGTATGGAGGCATATATGGAAGCTTTGGATATTTGGGAAGCAGTGGAAGAGGATTATGTAATTCCTGCTCTTCCAGACAATCTTACCATGGCACAAATAAAAGTGCAAAAGGAGAAGAAGACAAAGAGATCCGAGGCAAAGGCCTGTTTGTTTGTACTGCAATCTCATCTACTATCTTCACTCAAATTATGA

mRNA sequence

ATGGACGTCGTAGCAAGTTCCAGTTTCTCTTCAATTTCTCCATTGATATTTGATGGAGACAACTACCAAGTTTGGGCAGTTCGTATGGAGGCATATATGGAAGCTTTGGATATTTGGGAAGCAGTGGAAGAGGATTATGTAATTCCTGCTCTTCCAGACAATCTTACCATGGCACAAATAAAAGTGCAAAAGGAGAAGAAGACAAAGAGATCCGAGGCAAAGGCCTGTTTGTTTGTACTGCAATCTCATCTACTATCTTCACTCAAATTATGA

Coding sequence (CDS)

ATGGACGTCGTAGCAAGTTCCAGTTTCTCTTCAATTTCTCCATTGATATTTGATGGAGACAACTACCAAGTTTGGGCAGTTCGTATGGAGGCATATATGGAAGCTTTGGATATTTGGGAAGCAGTGGAAGAGGATTATGTAATTCCTGCTCTTCCAGACAATCTTACCATGGCACAAATAAAAGTGCAAAAGGAGAAGAAGACAAAGAGATCCGAGGCAAAGGCCTGTTTGTTTGTACTGCAATCTCATCTACTATCTTCACTCAAATTATGA

Protein sequence

MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQIKVQKEKKTKRSEAKACLFVLQSHLLSSLKL

Homology

[Close]

BLAST of IVF0013617 vs. ExPASy TrEMBL
Match: A0A5A7SQF5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00250 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.5e-31
Identity = 72/82 (87.80%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQI 60
          MD V SSSFSSISP IFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDN TMAQI
Sbjct: 1  MDAVVSSSFSSISPSIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNPTMAQI 60

Query: 61 KVQKEKKTKRSEAKACLFVLQS 83
          KVQKEKKTK+S+ KACLF   S
Sbjct: 61 KVQKEKKTKKSKPKACLFAAVS 82

[Close]

BLAST of IVF0013617 vs. ExPASy TrEMBL
Match: A0A5D3E2V7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00370 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.5e-30
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQI 60
          MD + SSSF+SISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDY IPALPDN TMAQI
Sbjct: 1  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60

Query: 61 KVQKEKKTKRSEAKACLFVLQS 83
          K QKEKKTK+S+AKACLF   S
Sbjct: 61 KAQKEKKTKKSKAKACLFAAVS 82

[Close]

BLAST of IVF0013617 vs. ExPASy TrEMBL
Match: A0A5D3DMJ1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00670 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.5e-30
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQI 60
          MD + SSSF+SISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDY IPALPDN TMAQI
Sbjct: 1  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60

Query: 61 KVQKEKKTKRSEAKACLFVLQS 83
          K QKEKKTK+S+AKACLF   S
Sbjct: 61 KAQKEKKTKKSKAKACLFAAVS 82

[Close]

BLAST of IVF0013617 vs. ExPASy TrEMBL
Match: A0A5D3BL45 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00490 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.5e-30
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1   MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQI 60
           MD + SSSF+SISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDY IPALPDN TMAQI
Sbjct: 620 MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 679

Query: 61  KVQKEKKTKRSEAKACLFVLQS 83
           K QKEKKTK+S+AKACLF   S
Sbjct: 680 KAQKEKKTKKSKAKACLFAAVS 701

[Close]

BLAST of IVF0013617 vs. ExPASy TrEMBL
Match: A0A5D3DBU0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00950 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.5e-30
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1   MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQI 60
           MD + SSSF+SISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDY IPALPDN TMAQI
Sbjct: 117 MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 176

Query: 61  KVQKEKKTKRSEAKACLFVLQS 83
           K QKEKKTK+S+AKACLF   S
Sbjct: 177 KAQKEKKTKKSKAKACLFAAVS 198

[Close]

BLAST of IVF0013617 vs. NCBI nr
Match: KAA0038193.1 (uncharacterized protein E6C27_scaffold270G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (359), Expect = 4.11e-42
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQI 60
          MD + SSSF+SISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDY IPALPDN TMAQI
Sbjct: 1  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60

Query: 61 KVQKEKKTKRSEAKACLF 78
          K QKEKKTK+S+AKACLF
Sbjct: 61 KAQKEKKTKKSKAKACLF 78

[Close]

BLAST of IVF0013617 vs. NCBI nr
Match: KAA0045175.1 (uncharacterized protein E6C27_scaffold30G001760 [Cucumis melo var. makuwa])

HSP 1 Score: 141 bits (355), Expect = 2.27e-41
Identity = 68/78 (87.18%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 1  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQI 60
          MD + SSSF+SISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDY IP LPDN TMAQI
Sbjct: 1  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPTLPDNPTMAQI 60

Query: 61 KVQKEKKTKRSEAKACLF 78
          K QKEKKTK+S+AKACLF
Sbjct: 61 KAQKEKKTKKSKAKACLF 78

[Close]

BLAST of IVF0013617 vs. NCBI nr
Match: KAA0059855.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (359), Expect = 7.40e-40
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQI 60
          MD + SSSF+SISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDY IPALPDN TMAQI
Sbjct: 1  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60

Query: 61 KVQKEKKTKRSEAKACLF 78
          K QKEKKTK+S+AKACLF
Sbjct: 61 KAQKEKKTKKSKAKACLF 78

[Close]

BLAST of IVF0013617 vs. NCBI nr
Match: XP_008456224.1 (PREDICTED: uncharacterized protein LOC103496228 [Cucumis melo])

HSP 1 Score: 139 bits (349), Expect = 1.11e-39
Identity = 68/78 (87.18%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 1  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQI 60
          MD +ASSSFSSISP IFDGDNYQVW VRMEAYMEALDIWEAVEEDY IPALP+N TMAQI
Sbjct: 1  MDAIASSSFSSISPSIFDGDNYQVWTVRMEAYMEALDIWEAVEEDYEIPALPNNPTMAQI 60

Query: 61 KVQKEKKTKRSEAKACLF 78
          KVQKEKKTK+ +AKACLF
Sbjct: 61 KVQKEKKTKKIKAKACLF 78

[Close]

BLAST of IVF0013617 vs. NCBI nr
Match: TYK12703.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (359), Expect = 4.82e-39
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQI 60
          MD + SSSF+SISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDY IPALPDN TMAQI
Sbjct: 1  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60

Query: 61 KVQKEKKTKRSEAKACLF 78
          K QKEKKTK+S+AKACLF
Sbjct: 61 KAQKEKKTKKSKAKACLF 78

The following BLAST results are available for this feature:

BLAST of IVF0013617 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013617 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQF5	6.5e-31	87.80	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3E2V7	1.5e-30	85.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DMJ1	1.5e-30	85.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BL45	1.5e-30	85.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DBU0	1.5e-30	85.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of IVF0013617 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038193.1	4.11e-42	88.46	uncharacterized protein E6C27_scaffold270G00260 [Cucumis melo var. makuwa]	[more]
KAA0045175.1	2.27e-41	87.18	uncharacterized protein E6C27_scaffold30G001760 [Cucumis melo var. makuwa]	[more]
KAA0059855.1	7.40e-40	88.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
XP_008456224.1	1.11e-39	87.18	PREDICTED: uncharacterized protein LOC103496228 [Cucumis melo]	[more]
TYK12703.1	4.82e-39	88.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of IVF0013617 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 17..43 e-value: 6.4E-13 score: 48.1
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 6..79
None	No IPR available	PANTHER	PTHR35317:SF13	ZINC FINGER, CCHC-TYPE-RELATED	coord: 6..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013617.2	IVF0013617.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding