IVF0013576 (gene) Melon (IVF77) v1

Overview


Name	IVF0013576
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Acyl-CoA-binding domain-containing protein 4
Location	chr09: 9852186 .. 9852413 (-)
RNA-Seq Expression	IVF0013576
Synteny	IVF0013576

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCGATGGTGAGGGCGAGCTCCGGCTTGCAATATCCCGATCGGTTCTACGCCGCGGCTTCTTATGCCGGTTTTGATGGATCACCGAAATTGTCTTCAAAGGCCCTCAGGTCTAAGTTCTCTGATGAGGCCGCTTTGTTACTCTATGGCTTGTATCAGCAGGTACTACCACGTGTTCTTACACCTGTGACTTACCAGTGTTGTTTCAGTTTGGTTGAGGTTTGA

mRNA sequence

ATGGCTGCGATGGTGAGGGCGAGCTCCGGCTTGCAATATCCCGATCGGTTCTACGCCGCGGCTTCTTATGCCGGTTTTGATGGATCACCGAAATTGTCTTCAAAGGCCCTCAGGTCTAAGTTCTCTGATGAGGCCGCTTTGTTACTCTATGGCTTGTATCAGCAGGTACTACCACGTGTTCTTACACCTGTGACTTACCAGTGTTGTTTCAGTTTGGTTGAGGTTTGA

Coding sequence (CDS)

ATGGCTGCGATGGTGAGGGCGAGCTCCGGCTTGCAATATCCCGATCGGTTCTACGCCGCGGCTTCTTATGCCGGTTTTGATGGATCACCGAAATTGTCTTCAAAGGCCCTCAGGTCTAAGTTCTCTGATGAGGCCGCTTTGTTACTCTATGGCTTGTATCAGCAGGTACTACCACGTGTTCTTACACCTGTGACTTACCAGTGTTGTTTCAGTTTGGTTGAGGTTTGA

Protein sequence

MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRVLTPVTYQCCFSLVEV

Homology

[Close]

BLAST of IVF0013576 vs. ExPASy Swiss-Prot
Match: Q8RWD9 (Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=ACBP5 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.1e-11
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1  MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ 56
          MA MVRASSGL YP+RFYAAASY G DGS + S K L SKFS++ +LLLY L+QQ
Sbjct: 1  MAHMVRASSGLSYPERFYAAASYVGLDGS-QSSVKQLSSKFSNDTSLLLYTLHQQ 54

[Close]

BLAST of IVF0013576 vs. ExPASy Swiss-Prot
Match: Q9MA55 (Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=ACBP4 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.1e-10
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 3  AMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ 56
          AM RA+SG  YP+RFYAAASY G DGS   S+K + SKF D+ ALLLY LYQQ
Sbjct: 2  AMPRATSGPAYPERFYAAASYVGLDGSDS-SAKNVISKFPDDTALLLYALYQQ 53

[Close]

BLAST of IVF0013576 vs. ExPASy Swiss-Prot
Match: Q75LJ4 (Acyl-CoA-binding domain-containing protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ACBP6 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-09
Identity = 37/66 (56.06%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 7  ASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVL--------P 65
          ASSGL YPDRFYAAA+YAGF      SS A+ S+F ++ ALLLYGLYQQ          P
Sbjct: 2  ASSGLAYPDRFYAAAAYAGFGAGGATSSSAI-SRFQNDVALLLYGLYQQATVGPCNVPKP 61

[Close]

BLAST of IVF0013576 vs. ExPASy TrEMBL
Match: A0A5A7VFV5 (Acyl-CoA-binding domain-containing protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold979G00450 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.4e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRV 60
          MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRV
Sbjct: 1  MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRV 60

Query: 61 LTPVTYQCCFSLVE 75
          LTPVTYQCCFSLVE
Sbjct: 61 LTPVTYQCCFSLVE 74

[Close]

BLAST of IVF0013576 vs. ExPASy TrEMBL
Match: A0A5D3CJT5 (Acyl-CoA-binding domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00570 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.9e-31
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRV 60
          MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRV
Sbjct: 1  MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRV 60

Query: 61 LTPVTYQCCFSLVE 75
          LTPVTY+CCFSLVE
Sbjct: 61 LTPVTYRCCFSLVE 74

[Close]

BLAST of IVF0013576 vs. ExPASy TrEMBL
Match: A0A5D3C6F7 (Acyl-CoA-binding domain-containing protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G002100 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.4e-31
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRV 60
          MA MVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRV
Sbjct: 1  MAVMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRV 60

Query: 61 LTPVTYQCCFSLVE 75
          LTPVTY+CCFSLVE
Sbjct: 61 LTPVTYRCCFSLVE 74

[Close]

BLAST of IVF0013576 vs. ExPASy TrEMBL
Match: A0A5A7SRV4 (Acyl-CoA-binding domain-containing protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold218G00010 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.4e-31
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRV 60
          MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPR 
Sbjct: 1  MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRA 60

Query: 61 LTPVTYQCCFSLVE 75
          LTPVTY+CCFSLVE
Sbjct: 61 LTPVTYRCCFSLVE 74

[Close]

BLAST of IVF0013576 vs. ExPASy TrEMBL
Match: A0A5A7TXT8 (Acyl-CoA-binding domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00610 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.6e-30
Identity = 71/75 (94.67%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 1  MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRV 60
          MAAM RASSGLQYPDRFYAAASYAGFDGSPK SSKALRSKFSDEAALLLYGLYQQVLPRV
Sbjct: 1  MAAMARASSGLQYPDRFYAAASYAGFDGSPKSSSKALRSKFSDEAALLLYGLYQQVLPRV 60

Query: 61 LTPVTYQCCFSLVEV 76
          LTPVTY+CCFSLVE+
Sbjct: 61 LTPVTYRCCFSLVEI 75

[Close]

BLAST of IVF0013576 vs. NCBI nr
Match: KAA0066628.1 (acyl-CoA-binding domain-containing protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (364), Expect = 9.53e-43
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRV 60
          MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRV
Sbjct: 1  MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRV 60

Query: 61 LTPVTYQCCFSLVE 74
          LTPVTYQCCFSLVE
Sbjct: 61 LTPVTYQCCFSLVE 74

[Close]

BLAST of IVF0013576 vs. NCBI nr
Match: KAA0063418.1 (acyl-CoA-binding domain-containing protein 4 [Cucumis melo var. makuwa] >TYK11680.1 acyl-CoA-binding domain-containing protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (360), Expect = 5.60e-42
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRV 60
          MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRV
Sbjct: 1  MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRV 60

Query: 61 LTPVTYQCCFSLVE 74
          LTPVTY+CCFSLVE
Sbjct: 61 LTPVTYRCCFSLVE 74

[Close]

BLAST of IVF0013576 vs. NCBI nr
Match: KAA0025187.1 (acyl-CoA-binding domain-containing protein 4 isoform X2 [Cucumis melo var. makuwa] >TYK07477.1 acyl-CoA-binding domain-containing protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 141 bits (356), Expect = 6.93e-42
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRV 60
          MA MVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRV
Sbjct: 1  MAVMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRV 60

Query: 61 LTPVTYQCCFSLVE 74
          LTPVTY+CCFSLVE
Sbjct: 61 LTPVTYRCCFSLVE 74

[Close]

BLAST of IVF0013576 vs. NCBI nr
Match: KAA0031885.1 (acyl-CoA-binding domain-containing protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 141 bits (356), Expect = 1.58e-41
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRV 60
          MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPR 
Sbjct: 1  MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRA 60

Query: 61 LTPVTYQCCFSLVE 74
          LTPVTY+CCFSLVE
Sbjct: 61 LTPVTYRCCFSLVE 74

[Close]

BLAST of IVF0013576 vs. NCBI nr
Match: TYK30810.1 (acyl-CoA-binding domain-containing protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (339), Expect = 1.47e-39
Identity = 69/75 (92.00%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRV 60
          M AMVRASSGLQYPDRFYA ASY GFDGS KLSSKALRSKFSDEA LLLYGLYQQVLPRV
Sbjct: 1  MVAMVRASSGLQYPDRFYAVASYVGFDGSSKLSSKALRSKFSDEATLLLYGLYQQVLPRV 60

Query: 61 LTPVTYQCCFSLVEV 75
          LTPVTY+CCFSLVEV
Sbjct: 61 LTPVTYRCCFSLVEV 75

[Close]

BLAST of IVF0013576 vs. TAIR 10
Match: AT5G27630.1 (acyl-CoA binding protein 5 )

HSP 1 Score: 69.3 bits (168), Expect = 1.5e-12
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1  MAAMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ 56
          MA MVRASSGL YP+RFYAAASY G DGS + S K L SKFS++ +LLLY L+QQ
Sbjct: 1  MAHMVRASSGLSYPERFYAAASYVGLDGS-QSSVKQLSSKFSNDTSLLLYTLHQQ 54

[Close]

BLAST of IVF0013576 vs. TAIR 10
Match: AT3G05420.1 (acyl-CoA binding protein 4 )

HSP 1 Score: 64.7 bits (156), Expect = 3.6e-11
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 3  AMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ 56
          AM RA+SG  YP+RFYAAASY G DGS   S+K + SKF D+ ALLLY LYQQ
Sbjct: 2  AMPRATSGPAYPERFYAAASYVGLDGSDS-SAKNVISKFPDDTALLLYALYQQ 53

[Close]

BLAST of IVF0013576 vs. TAIR 10
Match: AT3G05420.2 (acyl-CoA binding protein 4 )

HSP 1 Score: 64.7 bits (156), Expect = 3.6e-11
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 3  AMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ 56
          AM RA+SG  YP+RFYAAASY G DGS   S+K + SKF D+ ALLLY LYQQ
Sbjct: 2  AMPRATSGPAYPERFYAAASYVGLDGSDS-SAKNVISKFPDDTALLLYALYQQ 53

The following BLAST results are available for this feature:

BLAST of IVF0013576 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWD9	2.1e-11	69.09	Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9MA55	5.1e-10	66.04	Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q75LJ4	1.5e-09	56.06	Acyl-CoA-binding domain-containing protein 6 OS=Oryza sativa subsp. japonica OX=...	[more]

BLAST of IVF0013576 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VFV5	6.4e-32	100.00	Acyl-CoA-binding domain-containing protein 4 isoform X2 OS=Cucumis melo var. mak...	[more]
A0A5D3CJT5	1.9e-31	98.65	Acyl-CoA-binding domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A5D3C6F7	5.4e-31	97.30	Acyl-CoA-binding domain-containing protein 4 isoform X2 OS=Cucumis melo var. mak...	[more]
A0A5A7SRV4	5.4e-31	97.30	Acyl-CoA-binding domain-containing protein 4 isoform X2 OS=Cucumis melo var. mak...	[more]
A0A5A7TXT8	1.6e-30	94.67	Acyl-CoA-binding domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194...	[more]

BLAST of IVF0013576 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066628.1	9.53e-43	100.00	acyl-CoA-binding domain-containing protein 4 isoform X2 [Cucumis melo var. makuw...	[more]
KAA0063418.1	5.60e-42	98.65	acyl-CoA-binding domain-containing protein 4 [Cucumis melo var. makuwa] >TYK1168...	[more]
KAA0025187.1	6.93e-42	97.30	acyl-CoA-binding domain-containing protein 4 isoform X2 [Cucumis melo var. makuw...	[more]
KAA0031885.1	1.58e-41	97.30	acyl-CoA-binding domain-containing protein 4 isoform X2 [Cucumis melo var. makuw...	[more]
TYK30810.1	1.47e-39	92.00	acyl-CoA-binding domain-containing protein 4 isoform X2 [Cucumis melo var. makuw...	[more]

BLAST of IVF0013576 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27630.1	1.5e-12	69.09	acyl-CoA binding protein 5	[more]
AT3G05420.1	3.6e-11	66.04	acyl-CoA binding protein 4	[more]
AT3G05420.2	3.6e-11	66.04	acyl-CoA binding protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 72..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013576.1	IVF0013576.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006004	fucose metabolic process
biological_process	GO:0006869	lipid transport
cellular_component	GO:0005829	cytosol
molecular_function	GO:0000062	fatty-acyl-CoA binding
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0016740	transferase activity