IVF0013504 (gene) Melon (IVF77) v1

Overview


Name	IVF0013504
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr11: 24783480 .. 24784153 (-)
RNA-Seq Expression	IVF0013504
Synteny	IVF0013504

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGGGGAAGTTCTGAGGAGATACTGCGGGAGGCCGAAGCGGCTTACAAGGACAAAAAGGTCGTAACCATTGCAGACCAAGAGGCACGTCTGGATAAACTCTTTCAGAAGATCGACGAATATGACGATTTCTTAGAGCTAAGAGGTGAGAAAGAAGTACGAAGGGCCCTATGGTCGAGGTACAATACTCTTCAGAAACTATGGGAAGATTCCCAATGGAGTTGGGTAAAGAACCGTCATGAAGGAAGTTCTTGCTTATCTCCCCAAAAAGGGGTAGCCTTAGGAGTATACACATGTTCCAGTTGCAAGATCAGTATTTGTTCTTGGATTGGTTCGCAACCAATTTTCCTTTTCTAGAGGTTCATAAAGAGAAGGCAGCTCTTTGTCTATTGGTGGCCAAGTACGCAAAAAAGACCCTAGTCATCAATATCCTCTAGAAGAGTTTGAAGGAAGAAGAAGTTCAAAAAATTGAATCTTTCTTCTCTTTTTTTCGCAAATTCTTTGCGCCTTCTTTTCTTAGTTGAGCTGCTTCAAACCTTTCAAGTGAATATGGATTTCAGACTCCTTCTACGCCTTCGGATGGATCTCAACTTCAAGAGTCAACCAGCCGAATGGGACTCGGAGCTCTTGGGATGGGGAAGAGTTCTTCCATGTCTAAAGAGGTCGTATAA

mRNA sequence

ATGTCTGGGGGAAGTTCTGAGGAGATACTGCGGGAGGCCGAAGCGGCTTACAAGGACAAAAAGGTCGTAACCATTGCAGACCAAGAGGCACGTCTGGATAAACTCTTTCAGAAGATCGACGAATATGACGATTTCTTAGAGCTAAGAGGTGAGAAAGAAGTACGAAGGGCCCTATGGTCGAGGTACAATACTCTTCAGAAACTATGGGAAGATTCCCAATGGAGTTGGACTCCTTCTACGCCTTCGGATGGATCTCAACTTCAAGAGTCAACCAGCCGAATGGGACTCGGAGCTCTTGGGATGGGGAAGAGTTCTTCCATGTCTAAAGAGGTCGTATAA

Coding sequence (CDS)

ATGTCTGGGGGAAGTTCTGAGGAGATACTGCGGGAGGCCGAAGCGGCTTACAAGGACAAAAAGGTCGTAACCATTGCAGACCAAGAGGCACGTCTGGATAAACTCTTTCAGAAGATCGACGAATATGACGATTTCTTAGAGCTAAGAGGTGAGAAAGAAGTACGAAGGGCCCTATGGTCGAGGTACAATACTCTTCAGAAACTATGGGAAGATTCCCAATGGAGTTGGACTCCTTCTACGCCTTCGGATGGATCTCAACTTCAAGAGTCAACCAGCCGAATGGGACTCGGAGCTCTTGGGATGGGGAAGAGTTCTTCCATGTCTAAAGAGGTCGTATAA

Protein sequence

MSGGSSEEILREAEAAYKDKKVVTIADQEARLDKLFQKIDEYDDFLELRGEKEVRRALWSRYNTLQKLWEDSQWSWTPSTPSDGSQLQESTSRMGLGALGMGKSSSMSKEVV

Homology

[Close]

BLAST of IVF0013504 vs. ExPASy TrEMBL
Match: A0A5A7TZ86 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold47886G00180 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.6e-10
Identity = 37/69 (53.62%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 5   SSEEILREAEAAYKDKKVVTIADQEARLDKLFQKIDEYDDFLELRGEKEVRRALWSRYNT 64
           S ++IL+EAEAA K K++ TI +Q  R+ KL ++I++YDDFLELRG+ E+   LWS+Y+T
Sbjct: 51  SLQDILQEAEAASKHKRLSTIVNQHERVRKLRERIEQYDDFLELRGDPEIAGLLWSKYST 110

Query: 65  LQKLWEDSQ 74
             K+ EDSQ
Sbjct: 111 ESKIREDSQ 119

[Close]

BLAST of IVF0013504 vs. NCBI nr
Match: KAA0046641.1 (hypothetical protein E6C27_scaffold47886G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.76e-13
Identity = 37/69 (53.62%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 5   SSEEILREAEAAYKDKKVVTIADQEARLDKLFQKIDEYDDFLELRGEKEVRRALWSRYNT 64
           S ++IL+EAEAA K K++ TI +Q  R+ KL ++I++YDDFLELRG+ E+   LWS+Y+T
Sbjct: 51  SLQDILQEAEAASKHKRLSTIVNQHERVRKLRERIEQYDDFLELRGDPEIAGLLWSKYST 110

Query: 65  LQKLWEDSQ 73
             K+ EDSQ
Sbjct: 111 ESKIREDSQ 119

The following BLAST results are available for this feature:

BLAST of IVF0013504 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013504 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZ86	4.6e-10	53.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0013504 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046641.1	1.76e-13	53.62	hypothetical protein E6C27_scaffold47886G00180 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0013504 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013504.2	IVF0013504.2	mRNA