Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCATGAGGTTGGTAGGAAAATATCTTAATCTGTCGTCAATTGATAAGAATTTTCTGAACTGCAGTAAAATTGGTTTCCATCCTCGAGTTTTGCATAATGGTCCTGACACTGTAGAAGAACTCTTAGACAGACATGTGGTTAAGAAAGAAAAGTCCTTGGATGATGATGCTGATAAATTGATAACACAGCGACGTCTCACCAGCACTCGACGTGAGGCTCTAAGCCTCTATAGAGACATTCTACGGGCAACTCGATTCTTTATGTGGCCAGATTCTAAAGGTGTCTTGTGGCGAGATGTCCTCAGGCAGAATGCACGGAAGGAGTTTGAGGATGCACGCTTTGAGTCTGATCCAGAAATAGTGACCCGACTTCTGATTGGTGGGCGTGATGCAGTGCAGTCGGCACTTGACAAGCTTGCCGAGAAACAGAGGAAGGAGATTGATAAGAAACAAAGTGGTCGAGATCAACTCTGA
mRNA sequence
ATGACCATGAGGTTGGTAGGAAAATATCTTAATCTGTCGTCAATTGATAAGAATTTTCTGAACTGCAGTAAAATTGGTTTCCATCCTCGAGTTTTGCATAATGGTCCTGACACTGTAGAAGAACTCTTAGACAGACATGTGGTTAAGAAAGAAAAGTCCTTGGATGATGATGCTGATAAATTGATAACACAGCGACGTCTCACCAGCACTCGACGTGAGGCTCTAAGCCTCTATAGAGACATTCTACGGGCAACTCGATTCTTTATGTGGCCAGATTCTAAAGGTGTCTTGTGGCGAGATGTCCTCAGGCAGAATGCACGGAAGGAGTTTGAGGATGCACGCTTTGAGTCTGATCCAGAAATAGTGACCCGACTTCTGATTGGTGGGCGTGATGCAGTGCAGTCGGCACTTGACAAGCTTGCCGAGAAACAGAGGAAGGAGATTGATAAGAAACAAAGTGGTCGAGATCAACTCTGA
Coding sequence (CDS)
ATGACCATGAGGTTGGTAGGAAAATATCTTAATCTGTCGTCAATTGATAAGAATTTTCTGAACTGCAGTAAAATTGGTTTCCATCCTCGAGTTTTGCATAATGGTCCTGACACTGTAGAAGAACTCTTAGACAGACATGTGGTTAAGAAAGAAAAGTCCTTGGATGATGATGCTGATAAATTGATAACACAGCGACGTCTCACCAGCACTCGACGTGAGGCTCTAAGCCTCTATAGAGACATTCTACGGGCAACTCGATTCTTTATGTGGCCAGATTCTAAAGGTGTCTTGTGGCGAGATGTCCTCAGGCAGAATGCACGGAAGGAGTTTGAGGATGCACGCTTTGAGTCTGATCCAGAAATAGTGACCCGACTTCTGATTGGTGGGCGTGATGCAGTGCAGTCGGCACTTGACAAGCTTGCCGAGAAACAGAGGAAGGAGATTGATAAGAAACAAAGTGGTCGAGATCAACTCTGA
Protein sequence
MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADKLITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPEIVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRDQL
Homology
BLAST of IVF0013487 vs. ExPASy TrEMBL
Match:
A0A5A7VCD6 (Complex 1 LYR protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001620 PE=4 SV=1)
HSP 1 Score: 312.0 bits (798), Expect = 1.4e-81
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
Query: 1 MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK 60
MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK
Sbjct: 1 MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK 60
Query: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE 120
LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE
Sbjct: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE 120
Query: 121 IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRDQL 159
IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRDQL
Sbjct: 121 IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRDQL 158
BLAST of IVF0013487 vs. ExPASy TrEMBL
Match:
A0A1S4DWJ1 (uncharacterized protein LOC103488569 OS=Cucumis melo OX=3656 GN=LOC103488569 PE=4 SV=1)
HSP 1 Score: 312.0 bits (798), Expect = 1.4e-81
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
Query: 1 MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK 60
MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK
Sbjct: 1 MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK 60
Query: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE 120
LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE
Sbjct: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE 120
Query: 121 IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRDQL 159
IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRDQL
Sbjct: 121 IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRDQL 158
BLAST of IVF0013487 vs. ExPASy TrEMBL
Match:
A0A0A0LMK5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G346590 PE=4 SV=1)
HSP 1 Score: 289.3 bits (739), Expect = 9.9e-75
Identity = 145/158 (91.77%), Postives = 151/158 (95.57%), Query Frame = 0
Query: 1 MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK 60
MTMRLVGKYLNLSSI KNFL CSKIGFHPRVLHNGPDTVEELLDRHVVKKEK DD+ DK
Sbjct: 1 MTMRLVGKYLNLSSIHKNFLTCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKFFDDEDDK 60
Query: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE 120
LITQRRLT+TRREALSLYRDILRATRFFMWPDS+GVLWRDVLR+NARKEFEDAR ESDPE
Sbjct: 61 LITQRRLTTTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFEDARLESDPE 120
Query: 121 IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRDQL 159
+VTRLLIGGRDAVQSALDKLAEKQR+EIDKKQ GRDQL
Sbjct: 121 MVTRLLIGGRDAVQSALDKLAEKQREEIDKKQGGRDQL 158
BLAST of IVF0013487 vs. ExPASy TrEMBL
Match:
A0A6J1HEL0 (uncharacterized protein LOC111462339 OS=Cucurbita moschata OX=3662 GN=LOC111462339 PE=4 SV=1)
HSP 1 Score: 269.6 bits (688), Expect = 8.1e-69
Identity = 135/157 (85.99%), Postives = 149/157 (94.90%), Query Frame = 0
Query: 1 MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK 60
M+MRLV K + LS+ KNFL C+K+GFHPR+LHNGPDT++ELLDRHVVKKEKS DDD ++
Sbjct: 1 MSMRLVEKCVKLST-HKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEE 60
Query: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE 120
LITQRRLTSTRREALSLYRDILRATRFFMWPDS+GVLWRDVLRQNARKEFEDARFE+DPE
Sbjct: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPE 120
Query: 121 IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRDQ 158
IVTRLLIGGRDAVQSALDKLAEKQR+EIDKKQSGRD+
Sbjct: 121 IVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDR 156
BLAST of IVF0013487 vs. ExPASy TrEMBL
Match:
A0A6J1CRY1 (uncharacterized protein LOC111014019 OS=Momordica charantia OX=3673 GN=LOC111014019 PE=4 SV=1)
HSP 1 Score: 263.1 bits (671), Expect = 7.6e-67
Identity = 132/157 (84.08%), Postives = 147/157 (93.63%), Query Frame = 0
Query: 1 MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK 60
MT+RLVGK LNL SI K+FL C+KIGFHPRVLHNGPDT++ELLDRHVVKKEKS +D+ D+
Sbjct: 9 MTIRLVGKCLNL-SIHKHFLACNKIGFHPRVLHNGPDTIDELLDRHVVKKEKSFNDEDDE 68
Query: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE 120
LITQR LTSTRREALSLYRDI+RATRFFMWPDS+GVLWRDVLR+NARKEFE+AR+ESDPE
Sbjct: 69 LITQRHLTSTRREALSLYRDIIRATRFFMWPDSRGVLWRDVLRENARKEFEEARYESDPE 128
Query: 121 IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRDQ 158
+VTRLLIGGRDAVQSALDKLAEKQ +EIDKKQ G DQ
Sbjct: 129 VVTRLLIGGRDAVQSALDKLAEKQMQEIDKKQHGGDQ 164
BLAST of IVF0013487 vs. NCBI nr
Match:
XP_016900070.1 (PREDICTED: uncharacterized protein LOC103488569 [Cucumis melo] >KAA0064850.1 Complex 1 LYR protein [Cucumis melo var. makuwa])
HSP 1 Score: 308 bits (790), Expect = 1.04e-105
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
Query: 1 MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK 60
MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK
Sbjct: 1 MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK 60
Query: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE 120
LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE
Sbjct: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE 120
Query: 121 IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRDQL 158
IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRDQL
Sbjct: 121 IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRDQL 158
BLAST of IVF0013487 vs. NCBI nr
Match:
XP_031736624.1 (uncharacterized protein LOC101214249 [Cucumis sativus] >KGN62269.1 hypothetical protein Csa_018772 [Cucumis sativus])
HSP 1 Score: 286 bits (731), Expect = 1.03e-96
Identity = 145/158 (91.77%), Postives = 151/158 (95.57%), Query Frame = 0
Query: 1 MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK 60
MTMRLVGKYLNLSSI KNFL CSKIGFHPRVLHNGPDTVEELLDRHVVKKEK DD+ DK
Sbjct: 1 MTMRLVGKYLNLSSIHKNFLTCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKFFDDEDDK 60
Query: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE 120
LITQRRLT+TRREALSLYRDILRATRFFMWPDS+GVLWRDVLR+NARKEFEDAR ESDPE
Sbjct: 61 LITQRRLTTTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFEDARLESDPE 120
Query: 121 IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRDQL 158
+VTRLLIGGRDAVQSALDKLAEKQR+EIDKKQ GRDQL
Sbjct: 121 MVTRLLIGGRDAVQSALDKLAEKQREEIDKKQGGRDQL 158
BLAST of IVF0013487 vs. NCBI nr
Match:
XP_038884246.1 (uncharacterized protein LOC120075144 [Benincasa hispida])
HSP 1 Score: 271 bits (694), Expect = 4.08e-91
Identity = 140/156 (89.74%), Postives = 148/156 (94.87%), Query Frame = 0
Query: 3 MRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADKLI 62
MRLVGK LNLS I KNFL C+KIGFHPRVLHNGPDTV ELLDRHVVKKEKS DD+ D+LI
Sbjct: 1 MRLVGKCLNLS-IHKNFLTCNKIGFHPRVLHNGPDTVAELLDRHVVKKEKSFDDEEDELI 60
Query: 63 TQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPEIV 122
TQRRLT+TRREALSLYRDILRATRFFMWPDS+GVLWRDVLRQNARKEFEDAR+ESDPEIV
Sbjct: 61 TQRRLTTTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARYESDPEIV 120
Query: 123 TRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRDQL 158
TRLLIGGRDAVQSALDKLAEKQ +EIDKKQ+GRDQL
Sbjct: 121 TRLLIGGRDAVQSALDKLAEKQMQEIDKKQNGRDQL 155
BLAST of IVF0013487 vs. NCBI nr
Match:
XP_022961619.1 (uncharacterized protein LOC111462339 [Cucurbita moschata] >XP_022961620.1 uncharacterized protein LOC111462339 [Cucurbita moschata] >KAG6598519.1 hypothetical protein SDJN03_08297, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 266 bits (679), Expect = 8.45e-89
Identity = 135/156 (86.54%), Postives = 148/156 (94.87%), Query Frame = 0
Query: 1 MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK 60
M+MRLV K + LS+ KNFL C+K+GFHPR+LHNGPDT++ELLDRHVVKKEKS DDD ++
Sbjct: 1 MSMRLVEKCVKLST-HKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEE 60
Query: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE 120
LITQRRLTSTRREALSLYRDILRATRFFMWPDS+GVLWRDVLRQNARKEFEDARFE+DPE
Sbjct: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPE 120
Query: 121 IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRD 156
IVTRLLIGGRDAVQSALDKLAEKQR+EIDKKQSGRD
Sbjct: 121 IVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRD 155
BLAST of IVF0013487 vs. NCBI nr
Match:
XP_023545212.1 (uncharacterized protein LOC111804691 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 261 bits (668), Expect = 4.01e-87
Identity = 134/156 (85.90%), Postives = 146/156 (93.59%), Query Frame = 0
Query: 1 MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK 60
M+MRLV K + LS+ KNFL C+KIG+ PR LHNGPDT++ELLDRHVVKKEKS DDD ++
Sbjct: 1 MSMRLVEKCVKLST-HKNFLACNKIGYRPRALHNGPDTIDELLDRHVVKKEKSFDDDEEE 60
Query: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE 120
LITQRRLTSTRREALSLYRDILRATRFFMWPDS+GVLWRDVLRQNARKEFEDARFE+DPE
Sbjct: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPE 120
Query: 121 IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRD 156
IVTRLLIGGRDAVQSALDKLAEKQR+EIDKKQSGRD
Sbjct: 121 IVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRD 155
BLAST of IVF0013487 vs. TAIR 10
Match:
AT1G76060.1 (LYR family of Fe/S cluster biogenesis protein )
HSP 1 Score: 183.3 bits (464), Expect = 1.5e-46
Identity = 93/126 (73.81%), Postives = 108/126 (85.71%), Query Frame = 0
Query: 30 RVLHNGPDTVEELLDRHVVKKEKS-LDDDADKLITQRRLTSTRREALSLYRDILRATRFF 89
R LH GPDTVEELL+RH+ KKEK +D D + + +RRLTSTRREALSLYRDILRATRFF
Sbjct: 29 RFLHEGPDTVEELLERHLAKKEKPIIDHDEAEFLNRRRLTSTRREALSLYRDILRATRFF 88
Query: 90 MWPDSKGVLWRDVLRQNARKEFEDARFESDPEIVTRLLIGGRDAVQSALDKLAEKQRKEI 149
W DS+G LWRDVLR+NARKEFE ARFE+DPE++TRLLIGG DAV SALDKLAEKQR+ I
Sbjct: 89 TWIDSRGNLWRDVLRENARKEFEAARFETDPEVITRLLIGGSDAVSSALDKLAEKQREMI 148
Query: 150 DKKQSG 155
+K++ G
Sbjct: 149 EKQRRG 154
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VCD6 | 1.4e-81 | 100.00 | Complex 1 LYR protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82... | [more] |
A0A1S4DWJ1 | 1.4e-81 | 100.00 | uncharacterized protein LOC103488569 OS=Cucumis melo OX=3656 GN=LOC103488569 PE=... | [more] |
A0A0A0LMK5 | 9.9e-75 | 91.77 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G346590 PE=4 SV=1 | [more] |
A0A6J1HEL0 | 8.1e-69 | 85.99 | uncharacterized protein LOC111462339 OS=Cucurbita moschata OX=3662 GN=LOC1114623... | [more] |
A0A6J1CRY1 | 7.6e-67 | 84.08 | uncharacterized protein LOC111014019 OS=Momordica charantia OX=3673 GN=LOC111014... | [more] |
Match Name | E-value | Identity | Description | |
XP_016900070.1 | 1.04e-105 | 100.00 | PREDICTED: uncharacterized protein LOC103488569 [Cucumis melo] >KAA0064850.1 Com... | [more] |
XP_031736624.1 | 1.03e-96 | 91.77 | uncharacterized protein LOC101214249 [Cucumis sativus] >KGN62269.1 hypothetical ... | [more] |
XP_038884246.1 | 4.08e-91 | 89.74 | uncharacterized protein LOC120075144 [Benincasa hispida] | [more] |
XP_022961619.1 | 8.45e-89 | 86.54 | uncharacterized protein LOC111462339 [Cucurbita moschata] >XP_022961620.1 unchar... | [more] |
XP_023545212.1 | 4.01e-87 | 85.90 | uncharacterized protein LOC111804691 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
AT1G76060.1 | 1.5e-46 | 73.81 | LYR family of Fe/S cluster biogenesis protein | [more] |