Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTCGCATCCTGCAGGGAAACGGCTCCTTAACAAGCCCTTTCTCTATTACGTTAAACTTGCATATGTGTTCGATCACGACGATAGGACGATGGATCTCTTTGTTGAGACATTCGCTATCGTCGGGTCTAACGAGCCTGTCGAGTATGAGGGGTTTGACATGCCGGTTGGGAACAAGAAGTTCCCATCTATGTACAGCCAGGGGATTGACATATCCCAGGAGTATGTACGCACATCACGACCTACTCGCACGTCAGACGGTAGGGTCGGATTAAGTGGATCAAAGAGAAAGAGGGAAAGCCAGCAGAAGGGTGAGCTTGAAGTCATACATATGGCCGTCGAGTGTACGAATGACCAACTAAGGATGATTGTCGAGTGGCCTGCACGCGCCCTTGCCAATGACACCCATGTGCGCTAG
mRNA sequence
ATGCAGTCGCATCCTGCAGGGAAACGGCTCCTTAACAAGCCCTTTCTCTATTACGTTAAACTTGCATATGTGTTCGATCACGACGATAGGACGATGGATCTCTTTGTTGAGACATTCGCTATCGTCGGGTCTAACGAGCCTGTCGAGTATGAGGGGTTTGACATGCCGGTTGGGAACAAGAAGTTCCCATCTATGTACAGCCAGGGGATTGACATATCCCAGGAGTATGTACGCACATCACGACCTACTCGCACGTCAGACGGTAGGGTCGGATTAAGTGGATCAAAGAGAAAGAGGGAAAGCCAGCAGAAGGGTGAGCTTGAAGTCATACATATGGCCGTCGAGTGTACGAATGACCAACTAAGGATGATTGTCGAGTGGCCTGCACGCGCCCTTGCCAATGACACCCATGTGCGCTAG
Coding sequence (CDS)
ATGCAGTCGCATCCTGCAGGGAAACGGCTCCTTAACAAGCCCTTTCTCTATTACGTTAAACTTGCATATGTGTTCGATCACGACGATAGGACGATGGATCTCTTTGTTGAGACATTCGCTATCGTCGGGTCTAACGAGCCTGTCGAGTATGAGGGGTTTGACATGCCGGTTGGGAACAAGAAGTTCCCATCTATGTACAGCCAGGGGATTGACATATCCCAGGAGTATGTACGCACATCACGACCTACTCGCACGTCAGACGGTAGGGTCGGATTAAGTGGATCAAAGAGAAAGAGGGAAAGCCAGCAGAAGGGTGAGCTTGAAGTCATACATATGGCCGTCGAGTGTACGAATGACCAACTAAGGATGATTGTCGAGTGGCCTGCACGCGCCCTTGCCAATGACACCCATGTGCGCTAG
Protein sequence
MQSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQLRMIVEWPARALANDTHVR
Homology
BLAST of IVF0013370 vs. ExPASy TrEMBL
Match:
A0A5A7UFM7 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00930 PE=3 SV=1)
HSP 1 Score: 282.0 bits (720), Expect = 1.4e-72
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0
Query: 2 QSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKK 61
+SHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKK
Sbjct: 1230 RSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKK 1289
Query: 62 FPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQL 121
FPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQL
Sbjct: 1290 FPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQL 1349
Query: 122 RMIVEWPARALANDTHVR 140
RMIVEWPARALANDTHVR
Sbjct: 1350 RMIVEWPARALANDTHVR 1367
BLAST of IVF0013370 vs. ExPASy TrEMBL
Match:
A0A5A7U4I8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001180 PE=4 SV=1)
HSP 1 Score: 202.2 bits (513), Expect = 1.4e-48
Identity = 103/137 (75.18%), Postives = 114/137 (83.21%), Query Frame = 0
Query: 3 SHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKF 62
SHPA K L NKPF YY +LAYVF DR MD FV+TF VGSN+PVEY+ FDM GN++F
Sbjct: 28 SHPAAKGLFNKPFPYYDELAYVFG-CDRMMDGFVKTFDDVGSNKPVEYKRFDMLDGNEEF 87
Query: 63 PSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQLR 122
PSMYSQGID+SQE VR SRP+ TS GR+ SGSKRKRESQQKGE+EVIHMA+ECTNDQLR
Sbjct: 88 PSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAIECTNDQLR 147
Query: 123 MIVEWPARALANDTHVR 140
I EWPARALANDTHVR
Sbjct: 148 TIAEWPARALANDTHVR 163
BLAST of IVF0013370 vs. ExPASy TrEMBL
Match:
A0A5A7T3Q2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G003130 PE=4 SV=1)
HSP 1 Score: 190.3 bits (482), Expect = 5.5e-45
Identity = 96/138 (69.57%), Postives = 112/138 (81.16%), Query Frame = 0
Query: 1 MQSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNK 60
++SHPA KRL NK F YY +LAYVFDH D+T FV+TF VGSNEP EY+GFDM GN+
Sbjct: 67 VRSHPATKRLFNKLFPYYDELAYVFDH-DKTTGRFVKTFVDVGSNEPTEYKGFDMSDGNE 126
Query: 61 KFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQ 120
+F S+Y+QG D+SQ+ VR RP RTSDGRVGLS SKRKR SQ++ ELEVI+M +ECTNDQ
Sbjct: 127 EFLSLYNQGTDMSQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQ 186
Query: 121 LRMIVEWPARALANDTHV 139
LRMI EWPA ALANDTHV
Sbjct: 187 LRMIAEWPAYALANDTHV 203
BLAST of IVF0013370 vs. ExPASy TrEMBL
Match:
A0A5D3DAC5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00880 PE=4 SV=1)
HSP 1 Score: 188.3 bits (477), Expect = 2.1e-44
Identity = 95/138 (68.84%), Postives = 111/138 (80.43%), Query Frame = 0
Query: 1 MQSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNK 60
++SHPA KRL NK F YY +LAYVFDH D+T FV+TF VGSNEP EY+GFDM GN+
Sbjct: 67 VRSHPATKRLFNKLFPYYDELAYVFDH-DKTTGRFVKTFVDVGSNEPTEYKGFDMSDGNE 126
Query: 61 KFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQ 120
+F S+Y+QG D+SQ+ VR RP TSDGRVGLS SKRKR SQ++ ELEVI+M +ECTNDQ
Sbjct: 127 EFLSLYNQGTDMSQKDVRALRPAHTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQ 186
Query: 121 LRMIVEWPARALANDTHV 139
LRMI EWPA ALANDTHV
Sbjct: 187 LRMIAEWPAYALANDTHV 203
BLAST of IVF0013370 vs. ExPASy TrEMBL
Match:
A0A5D3BD15 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001730 PE=4 SV=1)
HSP 1 Score: 183.0 bits (463), Expect = 8.8e-43
Identity = 91/137 (66.42%), Postives = 108/137 (78.83%), Query Frame = 0
Query: 3 SHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKF 62
SHP K LLNK F +Y +L YVF DR F ETF VGSNEP+ YEGFD+P GNK+F
Sbjct: 52 SHPVRKGLLNKLFPFYDELVYVFGR-DRARGHFAETFTDVGSNEPIRYEGFDIPDGNKEF 111
Query: 63 PSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQLR 122
PS+Y+QGI++SQE VR S+P+R +GRVG SGSKRKR SQQ+ ELEVI+MA ECTNDQL+
Sbjct: 112 PSVYNQGINMSQEDVRASQPSRAFEGRVGSSGSKRKRGSQQEAELEVIYMARECTNDQLK 171
Query: 123 MIVEWPARALANDTHVR 140
++ EWPARALAND HVR
Sbjct: 172 IVAEWPARALANDNHVR 187
BLAST of IVF0013370 vs. NCBI nr
Match:
KAA0052279.1 (pol protein [Cucumis melo var. makuwa] >TYK01845.1 pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 279 bits (713), Expect = 4.22e-84
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0
Query: 2 QSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKK 61
+SHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKK
Sbjct: 1230 RSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKK 1289
Query: 62 FPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQL 121
FPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQL
Sbjct: 1290 FPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQL 1349
Query: 122 RMIVEWPARALANDTHVR 139
RMIVEWPARALANDTHVR
Sbjct: 1350 RMIVEWPARALANDTHVR 1367
BLAST of IVF0013370 vs. NCBI nr
Match:
KAA0050190.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 199 bits (507), Expect = 4.61e-62
Identity = 103/137 (75.18%), Postives = 114/137 (83.21%), Query Frame = 0
Query: 3 SHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKF 62
SHPA K L NKPF YY +LAYVF D R MD FV+TF VGSN+PVEY+ FDM GN++F
Sbjct: 28 SHPAAKGLFNKPFPYYDELAYVFGCD-RMMDGFVKTFDDVGSNKPVEYKRFDMLDGNEEF 87
Query: 63 PSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQLR 122
PSMYSQGID+SQE VR SRP+ TS GR+ SGSKRKRESQQKGE+EVIHMA+ECTNDQLR
Sbjct: 88 PSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAIECTNDQLR 147
Query: 123 MIVEWPARALANDTHVR 139
I EWPARALANDTHVR
Sbjct: 148 TIAEWPARALANDTHVR 163
BLAST of IVF0013370 vs. NCBI nr
Match:
KAA0038094.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 187 bits (475), Expect = 2.93e-57
Identity = 96/138 (69.57%), Postives = 112/138 (81.16%), Query Frame = 0
Query: 1 MQSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNK 60
++SHPA KRL NK F YY +LAYVFDHD +T FV+TF VGSNEP EY+GFDM GN+
Sbjct: 67 VRSHPATKRLFNKLFPYYDELAYVFDHD-KTTGRFVKTFVDVGSNEPTEYKGFDMSDGNE 126
Query: 61 KFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQ 120
+F S+Y+QG D+SQ+ VR RP RTSDGRVGLS SKRKR SQ++ ELEVI+M +ECTNDQ
Sbjct: 127 EFLSLYNQGTDMSQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQ 186
Query: 121 LRMIVEWPARALANDTHV 138
LRMI EWPA ALANDTHV
Sbjct: 187 LRMIAEWPAYALANDTHV 203
BLAST of IVF0013370 vs. NCBI nr
Match:
TYK20513.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 185 bits (470), Expect = 1.68e-56
Identity = 95/138 (68.84%), Postives = 111/138 (80.43%), Query Frame = 0
Query: 1 MQSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNK 60
++SHPA KRL NK F YY +LAYVFDHD +T FV+TF VGSNEP EY+GFDM GN+
Sbjct: 67 VRSHPATKRLFNKLFPYYDELAYVFDHD-KTTGRFVKTFVDVGSNEPTEYKGFDMSDGNE 126
Query: 61 KFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQ 120
+F S+Y+QG D+SQ+ VR RP TSDGRVGLS SKRKR SQ++ ELEVI+M +ECTNDQ
Sbjct: 127 EFLSLYNQGTDMSQKDVRALRPAHTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQ 186
Query: 121 LRMIVEWPARALANDTHV 138
LRMI EWPA ALANDTHV
Sbjct: 187 LRMIAEWPAYALANDTHV 203
BLAST of IVF0013370 vs. NCBI nr
Match:
KAA0065782.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96521.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 180 bits (457), Expect = 3.68e-54
Identity = 91/137 (66.42%), Postives = 108/137 (78.83%), Query Frame = 0
Query: 3 SHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKF 62
SHP K LLNK F +Y +L YVF D R F ETF VGSNEP+ YEGFD+P GNK+F
Sbjct: 52 SHPVRKGLLNKLFPFYDELVYVFGRD-RARGHFAETFTDVGSNEPIRYEGFDIPDGNKEF 111
Query: 63 PSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQLR 122
PS+Y+QGI++SQE VR S+P+R +GRVG SGSKRKR SQQ+ ELEVI+MA ECTNDQL+
Sbjct: 112 PSVYNQGINMSQEDVRASQPSRAFEGRVGSSGSKRKRGSQQEAELEVIYMARECTNDQLK 171
Query: 123 MIVEWPARALANDTHVR 139
++ EWPARALAND HVR
Sbjct: 172 IVAEWPARALANDNHVR 187
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UFM7 | 1.4e-72 | 99.28 | Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00930 PE... | [more] |
A0A5A7U4I8 | 1.4e-48 | 75.18 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7T3Q2 | 5.5e-45 | 69.57 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3DAC5 | 2.1e-44 | 68.84 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3BD15 | 8.8e-43 | 66.42 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0052279.1 | 4.22e-84 | 99.28 | pol protein [Cucumis melo var. makuwa] >TYK01845.1 pol protein [Cucumis melo var... | [more] |
KAA0050190.1 | 4.61e-62 | 75.18 | retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon p... | [more] |
KAA0038094.1 | 2.93e-57 | 69.57 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK20513.1 | 1.68e-56 | 68.84 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0065782.1 | 3.68e-54 | 66.42 | retrotransposon protein [Cucumis melo var. makuwa] >TYJ96521.1 retrotransposon p... | [more] |
Match Name | E-value | Identity | Description | |