IVF0013370 (gene) Melon (IVF77) v1

Overview
NameIVF0013370
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr07: 5894475 .. 5894894 (+)
RNA-Seq ExpressionIVF0013370
SyntenyIVF0013370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTCGCATCCTGCAGGGAAACGGCTCCTTAACAAGCCCTTTCTCTATTACGTTAAACTTGCATATGTGTTCGATCACGACGATAGGACGATGGATCTCTTTGTTGAGACATTCGCTATCGTCGGGTCTAACGAGCCTGTCGAGTATGAGGGGTTTGACATGCCGGTTGGGAACAAGAAGTTCCCATCTATGTACAGCCAGGGGATTGACATATCCCAGGAGTATGTACGCACATCACGACCTACTCGCACGTCAGACGGTAGGGTCGGATTAAGTGGATCAAAGAGAAAGAGGGAAAGCCAGCAGAAGGGTGAGCTTGAAGTCATACATATGGCCGTCGAGTGTACGAATGACCAACTAAGGATGATTGTCGAGTGGCCTGCACGCGCCCTTGCCAATGACACCCATGTGCGCTAG

mRNA sequence

ATGCAGTCGCATCCTGCAGGGAAACGGCTCCTTAACAAGCCCTTTCTCTATTACGTTAAACTTGCATATGTGTTCGATCACGACGATAGGACGATGGATCTCTTTGTTGAGACATTCGCTATCGTCGGGTCTAACGAGCCTGTCGAGTATGAGGGGTTTGACATGCCGGTTGGGAACAAGAAGTTCCCATCTATGTACAGCCAGGGGATTGACATATCCCAGGAGTATGTACGCACATCACGACCTACTCGCACGTCAGACGGTAGGGTCGGATTAAGTGGATCAAAGAGAAAGAGGGAAAGCCAGCAGAAGGGTGAGCTTGAAGTCATACATATGGCCGTCGAGTGTACGAATGACCAACTAAGGATGATTGTCGAGTGGCCTGCACGCGCCCTTGCCAATGACACCCATGTGCGCTAG

Coding sequence (CDS)

ATGCAGTCGCATCCTGCAGGGAAACGGCTCCTTAACAAGCCCTTTCTCTATTACGTTAAACTTGCATATGTGTTCGATCACGACGATAGGACGATGGATCTCTTTGTTGAGACATTCGCTATCGTCGGGTCTAACGAGCCTGTCGAGTATGAGGGGTTTGACATGCCGGTTGGGAACAAGAAGTTCCCATCTATGTACAGCCAGGGGATTGACATATCCCAGGAGTATGTACGCACATCACGACCTACTCGCACGTCAGACGGTAGGGTCGGATTAAGTGGATCAAAGAGAAAGAGGGAAAGCCAGCAGAAGGGTGAGCTTGAAGTCATACATATGGCCGTCGAGTGTACGAATGACCAACTAAGGATGATTGTCGAGTGGCCTGCACGCGCCCTTGCCAATGACACCCATGTGCGCTAG

Protein sequence

MQSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQLRMIVEWPARALANDTHVR
Homology
BLAST of IVF0013370 vs. ExPASy TrEMBL
Match: A0A5A7UFM7 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00930 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.4e-72
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0

Query: 2    QSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKK 61
            +SHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKK
Sbjct: 1230 RSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKK 1289

Query: 62   FPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQL 121
            FPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQL
Sbjct: 1290 FPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQL 1349

Query: 122  RMIVEWPARALANDTHVR 140
            RMIVEWPARALANDTHVR
Sbjct: 1350 RMIVEWPARALANDTHVR 1367

BLAST of IVF0013370 vs. ExPASy TrEMBL
Match: A0A5A7U4I8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001180 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.4e-48
Identity = 103/137 (75.18%), Postives = 114/137 (83.21%), Query Frame = 0

Query: 3   SHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKF 62
           SHPA K L NKPF YY +LAYVF   DR MD FV+TF  VGSN+PVEY+ FDM  GN++F
Sbjct: 28  SHPAAKGLFNKPFPYYDELAYVFG-CDRMMDGFVKTFDDVGSNKPVEYKRFDMLDGNEEF 87

Query: 63  PSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQLR 122
           PSMYSQGID+SQE VR SRP+ TS GR+  SGSKRKRESQQKGE+EVIHMA+ECTNDQLR
Sbjct: 88  PSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAIECTNDQLR 147

Query: 123 MIVEWPARALANDTHVR 140
            I EWPARALANDTHVR
Sbjct: 148 TIAEWPARALANDTHVR 163

BLAST of IVF0013370 vs. ExPASy TrEMBL
Match: A0A5A7T3Q2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G003130 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 5.5e-45
Identity = 96/138 (69.57%), Postives = 112/138 (81.16%), Query Frame = 0

Query: 1   MQSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNK 60
           ++SHPA KRL NK F YY +LAYVFDH D+T   FV+TF  VGSNEP EY+GFDM  GN+
Sbjct: 67  VRSHPATKRLFNKLFPYYDELAYVFDH-DKTTGRFVKTFVDVGSNEPTEYKGFDMSDGNE 126

Query: 61  KFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQ 120
           +F S+Y+QG D+SQ+ VR  RP RTSDGRVGLS SKRKR SQ++ ELEVI+M +ECTNDQ
Sbjct: 127 EFLSLYNQGTDMSQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQ 186

Query: 121 LRMIVEWPARALANDTHV 139
           LRMI EWPA ALANDTHV
Sbjct: 187 LRMIAEWPAYALANDTHV 203

BLAST of IVF0013370 vs. ExPASy TrEMBL
Match: A0A5D3DAC5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00880 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.1e-44
Identity = 95/138 (68.84%), Postives = 111/138 (80.43%), Query Frame = 0

Query: 1   MQSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNK 60
           ++SHPA KRL NK F YY +LAYVFDH D+T   FV+TF  VGSNEP EY+GFDM  GN+
Sbjct: 67  VRSHPATKRLFNKLFPYYDELAYVFDH-DKTTGRFVKTFVDVGSNEPTEYKGFDMSDGNE 126

Query: 61  KFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQ 120
           +F S+Y+QG D+SQ+ VR  RP  TSDGRVGLS SKRKR SQ++ ELEVI+M +ECTNDQ
Sbjct: 127 EFLSLYNQGTDMSQKDVRALRPAHTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQ 186

Query: 121 LRMIVEWPARALANDTHV 139
           LRMI EWPA ALANDTHV
Sbjct: 187 LRMIAEWPAYALANDTHV 203

BLAST of IVF0013370 vs. ExPASy TrEMBL
Match: A0A5D3BD15 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001730 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 8.8e-43
Identity = 91/137 (66.42%), Postives = 108/137 (78.83%), Query Frame = 0

Query: 3   SHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKF 62
           SHP  K LLNK F +Y +L YVF   DR    F ETF  VGSNEP+ YEGFD+P GNK+F
Sbjct: 52  SHPVRKGLLNKLFPFYDELVYVFGR-DRARGHFAETFTDVGSNEPIRYEGFDIPDGNKEF 111

Query: 63  PSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQLR 122
           PS+Y+QGI++SQE VR S+P+R  +GRVG SGSKRKR SQQ+ ELEVI+MA ECTNDQL+
Sbjct: 112 PSVYNQGINMSQEDVRASQPSRAFEGRVGSSGSKRKRGSQQEAELEVIYMARECTNDQLK 171

Query: 123 MIVEWPARALANDTHVR 140
           ++ EWPARALAND HVR
Sbjct: 172 IVAEWPARALANDNHVR 187

BLAST of IVF0013370 vs. NCBI nr
Match: KAA0052279.1 (pol protein [Cucumis melo var. makuwa] >TYK01845.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 279 bits (713), Expect = 4.22e-84
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0

Query: 2    QSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKK 61
            +SHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKK
Sbjct: 1230 RSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKK 1289

Query: 62   FPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQL 121
            FPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQL
Sbjct: 1290 FPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQL 1349

Query: 122  RMIVEWPARALANDTHVR 139
            RMIVEWPARALANDTHVR
Sbjct: 1350 RMIVEWPARALANDTHVR 1367

BLAST of IVF0013370 vs. NCBI nr
Match: KAA0050190.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 199 bits (507), Expect = 4.61e-62
Identity = 103/137 (75.18%), Postives = 114/137 (83.21%), Query Frame = 0

Query: 3   SHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKF 62
           SHPA K L NKPF YY +LAYVF  D R MD FV+TF  VGSN+PVEY+ FDM  GN++F
Sbjct: 28  SHPAAKGLFNKPFPYYDELAYVFGCD-RMMDGFVKTFDDVGSNKPVEYKRFDMLDGNEEF 87

Query: 63  PSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQLR 122
           PSMYSQGID+SQE VR SRP+ TS GR+  SGSKRKRESQQKGE+EVIHMA+ECTNDQLR
Sbjct: 88  PSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAIECTNDQLR 147

Query: 123 MIVEWPARALANDTHVR 139
            I EWPARALANDTHVR
Sbjct: 148 TIAEWPARALANDTHVR 163

BLAST of IVF0013370 vs. NCBI nr
Match: KAA0038094.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 187 bits (475), Expect = 2.93e-57
Identity = 96/138 (69.57%), Postives = 112/138 (81.16%), Query Frame = 0

Query: 1   MQSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNK 60
           ++SHPA KRL NK F YY +LAYVFDHD +T   FV+TF  VGSNEP EY+GFDM  GN+
Sbjct: 67  VRSHPATKRLFNKLFPYYDELAYVFDHD-KTTGRFVKTFVDVGSNEPTEYKGFDMSDGNE 126

Query: 61  KFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQ 120
           +F S+Y+QG D+SQ+ VR  RP RTSDGRVGLS SKRKR SQ++ ELEVI+M +ECTNDQ
Sbjct: 127 EFLSLYNQGTDMSQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQ 186

Query: 121 LRMIVEWPARALANDTHV 138
           LRMI EWPA ALANDTHV
Sbjct: 187 LRMIAEWPAYALANDTHV 203

BLAST of IVF0013370 vs. NCBI nr
Match: TYK20513.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 185 bits (470), Expect = 1.68e-56
Identity = 95/138 (68.84%), Postives = 111/138 (80.43%), Query Frame = 0

Query: 1   MQSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNK 60
           ++SHPA KRL NK F YY +LAYVFDHD +T   FV+TF  VGSNEP EY+GFDM  GN+
Sbjct: 67  VRSHPATKRLFNKLFPYYDELAYVFDHD-KTTGRFVKTFVDVGSNEPTEYKGFDMSDGNE 126

Query: 61  KFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQ 120
           +F S+Y+QG D+SQ+ VR  RP  TSDGRVGLS SKRKR SQ++ ELEVI+M +ECTNDQ
Sbjct: 127 EFLSLYNQGTDMSQKDVRALRPAHTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQ 186

Query: 121 LRMIVEWPARALANDTHV 138
           LRMI EWPA ALANDTHV
Sbjct: 187 LRMIAEWPAYALANDTHV 203

BLAST of IVF0013370 vs. NCBI nr
Match: KAA0065782.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96521.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 180 bits (457), Expect = 3.68e-54
Identity = 91/137 (66.42%), Postives = 108/137 (78.83%), Query Frame = 0

Query: 3   SHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKF 62
           SHP  K LLNK F +Y +L YVF  D R    F ETF  VGSNEP+ YEGFD+P GNK+F
Sbjct: 52  SHPVRKGLLNKLFPFYDELVYVFGRD-RARGHFAETFTDVGSNEPIRYEGFDIPDGNKEF 111

Query: 63  PSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVIHMAVECTNDQLR 122
           PS+Y+QGI++SQE VR S+P+R  +GRVG SGSKRKR SQQ+ ELEVI+MA ECTNDQL+
Sbjct: 112 PSVYNQGINMSQEDVRASQPSRAFEGRVGSSGSKRKRGSQQEAELEVIYMARECTNDQLK 171

Query: 123 MIVEWPARALANDTHVR 139
           ++ EWPARALAND HVR
Sbjct: 172 IVAEWPARALANDNHVR 187

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UFM71.4e-7299.28Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00930 PE... [more]
A0A5A7U4I81.4e-4875.18Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T3Q25.5e-4569.57Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DAC52.1e-4468.84Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BD158.8e-4366.42Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0052279.14.22e-8499.28pol protein [Cucumis melo var. makuwa] >TYK01845.1 pol protein [Cucumis melo var... [more]
KAA0050190.14.61e-6275.18retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon p... [more]
KAA0038094.12.93e-5769.57retrotransposon protein [Cucumis melo var. makuwa][more]
TYK20513.11.68e-5668.84retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0065782.13.68e-5466.42retrotransposon protein [Cucumis melo var. makuwa] >TYJ96521.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0013370.1IVF0013370.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding