IVF0013361 (gene) Melon (IVF77) v1

Overview
NameIVF0013361
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr06: 5613791 .. 5614048 (+)
RNA-Seq ExpressionIVF0013361
SyntenyIVF0013361
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCACTACATCCGTAAACCAATGGAGAAAGGAATTAAAGATATAATCAAGTGCCAAAGCAACTTGCAAGAAATGCATCTACGAAGTCAAAAGCACTTGAGCAATTTGTCACTAAAAGTGGACAACGCAAATGTTAACACAAAGGCACAATTAAATAAACTCAAGGGAAAAATGGCTAAGCTTAAAACAAAAAATCAGGAGTTCCAAACACAACTTCTTGCAGTTAGGGAGCAAAACGAGGCGATGAAGGAATAA

mRNA sequence

ATGGATCACTACATCCGTAAACCAATGGAGAAAGGAATTAAAGATATAATCAAGTGCCAAAGCAACTTGCAAGAAATGCATCTACGAAGTCAAAAGCACTTGAGCAATTTGTCACTAAAAGTGGACAACGCAAATGTTAACACAAAGGCACAATTAAATAAACTCAAGGGAAAAATGGCTAAGCTTAAAACAAAAAATCAGGAGTTCCAAACACAACTTCTTGCAGTTAGGGAGCAAAACGAGGCGATGAAGGAATAA

Coding sequence (CDS)

ATGGATCACTACATCCGTAAACCAATGGAGAAAGGAATTAAAGATATAATCAAGTGCCAAAGCAACTTGCAAGAAATGCATCTACGAAGTCAAAAGCACTTGAGCAATTTGTCACTAAAAGTGGACAACGCAAATGTTAACACAAAGGCACAATTAAATAAACTCAAGGGAAAAATGGCTAAGCTTAAAACAAAAAATCAGGAGTTCCAAACACAACTTCTTGCAGTTAGGGAGCAAAACGAGGCGATGAAGGAATAA

Protein sequence

MDHYIRKPMEKGIKDIIKCQSNLQEMHLRSQKHLSNLSLKVDNANVNTKAQLNKLKGKMAKLKTKNQEFQTQLLAVREQNEAMKE
Homology
BLAST of IVF0013361 vs. ExPASy TrEMBL
Match: A0A0A0KDS3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G024390 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.2e-12
Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = 0

Query: 1  MDHYIRKPMEKGIKDIIKCQSNLQEMHLRSQKHLSNLSLKVDNANVNTKAQLNKLKGKMA 60
          MD  I +PM +G +D IKCQ+ LQE  LRSQK +S+L  ++DNAN +TKAQLN+   K+ 
Sbjct: 1  MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIM 60

Query: 61 KLKTKNQEFQTQLLAVREQNEAMKE 86
          +L T+N E Q +LL V EQNEA+ E
Sbjct: 61 ELITQNGELQGELLGVSEQNEALIE 85

BLAST of IVF0013361 vs. ExPASy TrEMBL
Match: A0A5A7T3H5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001500 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.9e-09
Identity = 37/77 (48.05%), Postives = 54/77 (70.13%), Query Frame = 0

Query: 5  IRKPMEKGIKDIIKCQSNLQEMHLRSQKHLSNLSLKVDNANVNTKAQLNKLKGKMAKLKT 64
          I  P+++G +  +K + NL EMHLRSQK L +L LK DN+N + + Q+++ K KM  LKT
Sbjct: 13 IDDPLQRGKETTLKSERNLYEMHLRSQKQLHDLELKCDNSNAHNQGQMDQPKAKMNGLKT 72

Query: 65 KNQEFQTQLLAVREQNE 82
           NQE +T+L  +R+QNE
Sbjct: 73 HNQELKTKLQEIRKQNE 89

BLAST of IVF0013361 vs. ExPASy TrEMBL
Match: A0A5D3C5U6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001830 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.9e-09
Identity = 35/85 (41.18%), Postives = 57/85 (67.06%), Query Frame = 0

Query: 1   MDHYIRKPMEKGIKDIIKCQSNLQEMHLRSQKHLSNLSLKVDNANVNTKAQLNKLKGKMA 60
           +D Y+ KPM  G +D+I+CQSNLQ+MHL  QK L +  +K+ N N + +AQ+  LK +M 
Sbjct: 117 IDDYVCKPMSNGFEDVIQCQSNLQKMHLCCQKQLRDFEVKLQNINHHHQAQIEGLKAEMQ 176

Query: 61  KLKTKNQEFQTQLLAVREQNEAMKE 86
           +L+++NQE + Q+  + E  E + +
Sbjct: 177 ELRSQNQELKVQIHVIMEMIEQISK 201

BLAST of IVF0013361 vs. ExPASy TrEMBL
Match: A0A5D3D645 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold368G00010 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 32/63 (50.79%), Postives = 50/63 (79.37%), Query Frame = 0

Query: 1  MDHYIRKPMEKGIKDIIKCQSNLQEMHLRSQKHLSNLSLKVDNANVNTKAQLNKLKGKMA 60
          +D +I KP+E+G +D  +CQSNLQEM LRSQK +S+L LK+DNA+ + +AQ+++ + ++ 
Sbjct: 16 IDKFICKPLERGFEDTFQCQSNLQEMQLRSQKQVSDLELKIDNASASNQAQMDQFQVEVK 75

Query: 61 KLK 64
          KLK
Sbjct: 76 KLK 78

BLAST of IVF0013361 vs. ExPASy TrEMBL
Match: A0A0A0KJB9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G049020 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.3e-08
Identity = 35/77 (45.45%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 2   DHYIRKPMEKGIKDIIKCQSNLQEMHLRSQKHLSNLSLKVDNANVNTKAQLNKLKGKMAK 61
           D Y+ KPM  G +D I+CQSN QEMH +SQK L +  LK+DN N + + Q+  LK KM +
Sbjct: 54  DDYVCKPMSSGFEDEIQCQSNFQEMHFQSQKQLEDFKLKLDNKNHHHQVQIEGLKAKMQE 113

Query: 62  LKTKNQEFQTQLLAVRE 79
           L  + QE + Q   + E
Sbjct: 114 LILQEQELKVQNQVIME 130

BLAST of IVF0013361 vs. NCBI nr
Match: KGN45931.1 (hypothetical protein Csa_004795 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 5.28e-17
Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = 0

Query: 1  MDHYIRKPMEKGIKDIIKCQSNLQEMHLRSQKHLSNLSLKVDNANVNTKAQLNKLKGKMA 60
          MD  I +PM +G +D IKCQ+ LQE  LRSQK +S+L  ++DNAN +TKAQLN+   K+ 
Sbjct: 1  MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIM 60

Query: 61 KLKTKNQEFQTQLLAVREQNEAM 83
          +L T+N E Q +LL V EQNEA+
Sbjct: 61 ELITQNGELQGELLGVSEQNEAL 83

BLAST of IVF0013361 vs. NCBI nr
Match: KAA0038042.1 (hypothetical protein E6C27_scaffold36G002430 [Cucumis melo var. makuwa] >TYK20561.1 hypothetical protein E5676_scaffold237G001500 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 6.94e-13
Identity = 37/77 (48.05%), Postives = 54/77 (70.13%), Query Frame = 0

Query: 5  IRKPMEKGIKDIIKCQSNLQEMHLRSQKHLSNLSLKVDNANVNTKAQLNKLKGKMAKLKT 64
          I  P+++G +  +K + NL EMHLRSQK L +L LK DN+N + + Q+++ K KM  LKT
Sbjct: 13 IDDPLQRGKETTLKSERNLYEMHLRSQKQLHDLELKCDNSNAHNQGQMDQPKAKMNGLKT 72

Query: 65 KNQEFQTQLLAVREQNE 81
           NQE +T+L  +R+QNE
Sbjct: 73 HNQELKTKLQEIRKQNE 89

BLAST of IVF0013361 vs. NCBI nr
Match: KAA0049656.1 (hypothetical protein E6C27_scaffold163G001250 [Cucumis melo var. makuwa] >TYK19034.1 hypothetical protein E5676_scaffold368G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 1.79e-12
Identity = 32/63 (50.79%), Postives = 50/63 (79.37%), Query Frame = 0

Query: 1  MDHYIRKPMEKGIKDIIKCQSNLQEMHLRSQKHLSNLSLKVDNANVNTKAQLNKLKGKMA 60
          +D +I KP+E+G +D  +CQSNLQEM LRSQK +S+L LK+DNA+ + +AQ+++ + ++ 
Sbjct: 16 IDKFICKPLERGFEDTFQCQSNLQEMQLRSQKQVSDLELKIDNASASNQAQMDQFQVEVK 75

Query: 61 KLK 63
          KLK
Sbjct: 76 KLK 78

BLAST of IVF0013361 vs. NCBI nr
Match: TYK07283.1 (hypothetical protein E5676_scaffold606G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 4.13e-12
Identity = 34/78 (43.59%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 1   MDHYIRKPMEKGIKDIIKCQSNLQEMHLRSQKHLSNLSLKVDNANVNTKAQLNKLKGKMA 60
           +D Y+ KPM  G +D+I+CQSNLQ+MHL  QK L +  +K+ N N + +AQ+  LK +M 
Sbjct: 117 IDDYVCKPMSNGFEDVIQCQSNLQKMHLCCQKQLRDFEVKLQNINHHHQAQIEGLKAEMQ 176

Query: 61  KLKTKNQEFQTQLLAVRE 78
           +L+++NQE + Q+  + E
Sbjct: 177 ELRSQNQELKVQIHVIME 194

BLAST of IVF0013361 vs. NCBI nr
Match: KGN49653.1 (hypothetical protein Csa_018510 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 4.76e-11
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 0

Query: 2   DHYIRKPMEKGIKDIIKCQSNLQEMHLRSQKHLSNLSLKVDNANVNTKAQLNKLKGKMAK 61
           D Y+ KPM  G +D I+CQSN QEMH +SQK L +  LK+DN N + + Q+  LK KM +
Sbjct: 54  DDYVCKPMSSGFEDEIQCQSNFQEMHFQSQKQLEDFKLKLDNKNHHHQVQIEGLKAKMQE 113

Query: 62  LKTKNQEFQTQ 72
           L  + QE + Q
Sbjct: 114 LILQEQELKVQ 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KDS32.2e-1254.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G024390 PE=4 SV=1[more]
A0A5A7T3H53.9e-0948.05Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C5U63.9e-0941.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D6451.5e-0850.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KJB94.3e-0845.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G049020 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN45931.15.28e-1754.22hypothetical protein Csa_004795 [Cucumis sativus][more]
KAA0038042.16.94e-1348.05hypothetical protein E6C27_scaffold36G002430 [Cucumis melo var. makuwa] >TYK2056... [more]
KAA0049656.11.79e-1250.79hypothetical protein E6C27_scaffold163G001250 [Cucumis melo var. makuwa] >TYK190... [more]
TYK07283.14.13e-1243.59hypothetical protein E5676_scaffold606G001830 [Cucumis melo var. makuwa][more]
KGN49653.14.76e-1147.89hypothetical protein Csa_018510 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 45..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0013361.1IVF0013361.1mRNA