IVF0013352 (gene) Melon (IVF77) v1

Overview
NameIVF0013352
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionFormin-like protein 4 isoform X2
Locationchr05: 11351291 .. 11351599 (+)
RNA-Seq ExpressionIVF0013352
SyntenyIVF0013352
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAATTAAAAACAACTTCATCACAAAAAGGGAGTGAACCTCTTCTAGAAAGGGAAATATGTGAATGGGTATTGGATAAACGGTCGGGGCATGTGAAAGGACAAGGTTGGGGACCAAGACCCAAGAATGCTAGAAACGAAACAATTCAACACAACACAAAAGAAGCAAATGCACAGATTGCTCACTTGCAAAGTATAGTTGAATCATAACAAGCTACAATTGAAGCAATTTAAAGAAGATTATCCTGTCAAGAAGCTACCTCCAACATGGAACGAAGTTCAGAACAATCAAATGATAGTCAATAG

mRNA sequence

ATGGTGGAATTAAAAACAACTTCATCACAAAAAGGGAGTGAACCTCTTCTAGAAAGGGAAATATGTGAATGGGTATTGGATAAACGGTCGGGGCATGTGAAAGGACAAGGTTGGGGACCAAGACCCAAGAATGCTAGAAACGAAACAATTCAACACAACACAAAAGAAGCAAATGCACAGATTGCTCACTTAAGATTATCCTGTCAAGAAGCTACCTCCAACATGGAACGAAGTTCAGAACAATCAAATGATAGTCAATAG

Coding sequence (CDS)

ATGGTGGAATTAAAAACAACTTCATCACAAAAAGGGAGTGAACCTCTTCTAGAAAGGGAAATATGTGAATGGGTATTGGATAAACGGTCGGGGCATGTGAAAGGACAAGGTTGGGGACCAAGACCCAAGAATGCTAGAAACGAAACAATTCAACACAACACAAAAGAAGCAAATGCACAGATTGCTCACTTAAGATTATCCTGTCAAGAAGCTACCTCCAACATGGAACGAAGTTCAGAACAATCAAATGATAGTCAATAG

Protein sequence

MVELKTTSSQKGSEPLLEREICEWVLDKRSGHVKGQGWGPRPKNARNETIQHNTKEANAQIAHLRLSCQEATSNMERSSEQSNDSQ
Homology
[Close]
BLAST of IVF0013352 vs. ExPASy TrEMBL
Match: A0A5D3DBZ5 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00730 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.1e-33
Identity = 81/102 (79.41%), Postives = 84/102 (82.35%), Query Frame = 0 

Query: 1   MVELKTTSSQKGSEPLLEREICEWVLDKRSGHVKGQGWGPRPKNARNETIQHNTKEANAQ 60
           MVELKTTSSQ+GSEPLLEREIC+ VL KRSGHVKGQGWGPRPKNARNETIQHNTKEANAQ
Sbjct: 87  MVELKTTSSQEGSEPLLEREICDRVLGKRSGHVKGQGWGPRPKNARNETIQHNTKEANAQ 146

Query: 61  IAHL----------------RLSCQEATSNMERSSEQSNDSQ 87
           IAHL                RLSCQEATSNME+SSEQSNDSQ
Sbjct: 147 IAHLQSIVESQQATIEVILRRLSCQEATSNMEQSSEQSNDSQ 188

[Close]
BLAST of IVF0013352 vs. ExPASy TrEMBL
Match: A0A5A7VLG0 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001230 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.7e-33
Identity = 81/101 (80.20%), Postives = 83/101 (82.18%), Query Frame = 0 

Query: 2   VELKTTSSQKGSEPLLEREICEWVLDKRSGHVKGQGWGPRPKNARNETIQHNTKEANAQI 61
           VELKTTSSQ+GSEPLLEREIC+ VL KRSGHVKGQGWGPRPKNARNETIQHNTKEANAQI
Sbjct: 88  VELKTTSSQEGSEPLLEREICDRVLGKRSGHVKGQGWGPRPKNARNETIQHNTKEANAQI 147

Query: 62  AHL----------------RLSCQEATSNMERSSEQSNDSQ 87
           AHL                RLSCQEATSNMERSSEQSNDSQ
Sbjct: 148 AHLQSIVNSQQATIEAILRRLSCQEATSNMERSSEQSNDSQ 188

[Close]
BLAST of IVF0013352 vs. ExPASy TrEMBL
Match: A0A5A7TVR8 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G001640 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.5e-32
Identity = 80/102 (78.43%), Postives = 84/102 (82.35%), Query Frame = 0 

Query: 1   MVELKTTSSQKGSEPLLEREICEWVLDKRSGHVKGQGWGPRPKNARNETIQHNTKEANAQ 60
           MVELKTTSSQ+GSEPLLER+IC+ VL KRSGHVKGQGWGPRPKNARNETIQHNTK+ANAQ
Sbjct: 189 MVELKTTSSQEGSEPLLERKICDRVLGKRSGHVKGQGWGPRPKNARNETIQHNTKKANAQ 248

Query: 61  IAHL----------------RLSCQEATSNMERSSEQSNDSQ 87
           IAHL                RLSCQEATSNMERSSEQSNDSQ
Sbjct: 249 IAHLQSIVESQQATIEAILRRLSCQEATSNMERSSEQSNDSQ 290

[Close]
BLAST of IVF0013352 vs. ExPASy TrEMBL
Match: A0A5D3C2Z5 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001300 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.5e-32
Identity = 80/102 (78.43%), Postives = 84/102 (82.35%), Query Frame = 0 

Query: 1   MVELKTTSSQKGSEPLLEREICEWVLDKRSGHVKGQGWGPRPKNARNETIQHNTKEANAQ 60
           MVELKTTSSQ+GSEPLLER+IC+ VL KRSGHVKGQGWGPRPKNARNETIQHNTK+ANAQ
Sbjct: 206 MVELKTTSSQEGSEPLLERKICDRVLGKRSGHVKGQGWGPRPKNARNETIQHNTKKANAQ 265

Query: 61  IAHL----------------RLSCQEATSNMERSSEQSNDSQ 87
           IAHL                RLSCQEATSNMERSSEQSNDSQ
Sbjct: 266 IAHLQSIVESQQATIEAILRRLSCQEATSNMERSSEQSNDSQ 307

[Close]
BLAST of IVF0013352 vs. ExPASy TrEMBL
Match: A0A5A7VIL7 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001560 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.3e-32
Identity = 80/102 (78.43%), Postives = 83/102 (81.37%), Query Frame = 0 

Query: 1   MVELKTTSSQKGSEPLLEREICEWVLDKRSGHVKGQGWGPRPKNARNETIQHNTKEANAQ 60
           MVELKTTSSQ+ SEPLLEREIC+ VL KRSGHVKGQGWGPRPKNARNETIQHNTKEANAQ
Sbjct: 87  MVELKTTSSQEWSEPLLEREICDRVLGKRSGHVKGQGWGPRPKNARNETIQHNTKEANAQ 146

Query: 61  IAHL----------------RLSCQEATSNMERSSEQSNDSQ 87
           IAHL                RLSCQEATSNME+SSEQSNDSQ
Sbjct: 147 IAHLQSIVESQQATIEVILRRLSCQEATSNMEQSSEQSNDSQ 188

[Close]
BLAST of IVF0013352 vs. NCBI nr
Match: TYK21104.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 150 bits (379), Expect = 6.21e-44
Identity = 81/102 (79.41%), Postives = 84/102 (82.35%), Query Frame = 0 

Query: 1   MVELKTTSSQKGSEPLLEREICEWVLDKRSGHVKGQGWGPRPKNARNETIQHNTKEANAQ 60
           MVELKTTSSQ+GSEPLLEREIC+ VL KRSGHVKGQGWGPRPKNARNETIQHNTKEANAQ
Sbjct: 87  MVELKTTSSQEGSEPLLEREICDRVLGKRSGHVKGQGWGPRPKNARNETIQHNTKEANAQ 146

Query: 61  IAHL----------------RLSCQEATSNMERSSEQSNDSQ 86
           IAHL                RLSCQEATSNME+SSEQSNDSQ
Sbjct: 147 IAHLQSIVESQQATIEVILRRLSCQEATSNMEQSSEQSNDSQ 188

[Close]
BLAST of IVF0013352 vs. NCBI nr
Match: KAA0067296.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 150 bits (378), Expect = 8.81e-44
Identity = 81/101 (80.20%), Postives = 83/101 (82.18%), Query Frame = 0 

Query: 2   VELKTTSSQKGSEPLLEREICEWVLDKRSGHVKGQGWGPRPKNARNETIQHNTKEANAQI 61
           VELKTTSSQ+GSEPLLEREIC+ VL KRSGHVKGQGWGPRPKNARNETIQHNTKEANAQI
Sbjct: 88  VELKTTSSQEGSEPLLEREICDRVLGKRSGHVKGQGWGPRPKNARNETIQHNTKEANAQI 147

Query: 62  AHL----------------RLSCQEATSNMERSSEQSNDSQ 86
           AHL                RLSCQEATSNMERSSEQSNDSQ
Sbjct: 148 AHLQSIVNSQQATIEAILRRLSCQEATSNMERSSEQSNDSQ 188

[Close]
BLAST of IVF0013352 vs. NCBI nr
Match: KAA0068182.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (371), Expect = 1.02e-42
Identity = 80/102 (78.43%), Postives = 83/102 (81.37%), Query Frame = 0 

Query: 1   MVELKTTSSQKGSEPLLEREICEWVLDKRSGHVKGQGWGPRPKNARNETIQHNTKEANAQ 60
           MVELKTTSSQ+ SEPLLEREIC+ VL KRSGHVKGQGWGPRPKNARNETIQHNTKEANAQ
Sbjct: 87  MVELKTTSSQEWSEPLLEREICDRVLGKRSGHVKGQGWGPRPKNARNETIQHNTKEANAQ 146

Query: 61  IAHL----------------RLSCQEATSNMERSSEQSNDSQ 86
           IAHL                RLSCQEATSNME+SSEQSNDSQ
Sbjct: 147 IAHLQSIVESQQATIEVILRRLSCQEATSNMEQSSEQSNDSQ 188

[Close]
BLAST of IVF0013352 vs. NCBI nr
Match: KAA0046978.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (375), Expect = 4.08e-42
Identity = 80/102 (78.43%), Postives = 84/102 (82.35%), Query Frame = 0 

Query: 1   MVELKTTSSQKGSEPLLEREICEWVLDKRSGHVKGQGWGPRPKNARNETIQHNTKEANAQ 60
           MVELKTTSSQ+GSEPLLER+IC+ VL KRSGHVKGQGWGPRPKNARNETIQHNTK+ANAQ
Sbjct: 189 MVELKTTSSQEGSEPLLERKICDRVLGKRSGHVKGQGWGPRPKNARNETIQHNTKKANAQ 248

Query: 61  IAHL----------------RLSCQEATSNMERSSEQSNDSQ 86
           IAHL                RLSCQEATSNMERSSEQSNDSQ
Sbjct: 249 IAHLQSIVESQQATIEAILRRLSCQEATSNMERSSEQSNDSQ 290

[Close]
BLAST of IVF0013352 vs. NCBI nr
Match: TYK04806.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (375), Expect = 6.19e-42
Identity = 80/102 (78.43%), Postives = 84/102 (82.35%), Query Frame = 0 

Query: 1   MVELKTTSSQKGSEPLLEREICEWVLDKRSGHVKGQGWGPRPKNARNETIQHNTKEANAQ 60
           MVELKTTSSQ+GSEPLLER+IC+ VL KRSGHVKGQGWGPRPKNARNETIQHNTK+ANAQ
Sbjct: 206 MVELKTTSSQEGSEPLLERKICDRVLGKRSGHVKGQGWGPRPKNARNETIQHNTKKANAQ 265

Query: 61  IAHL----------------RLSCQEATSNMERSSEQSNDSQ 86
           IAHL                RLSCQEATSNMERSSEQSNDSQ
Sbjct: 266 IAHLQSIVESQQATIEAILRRLSCQEATSNMERSSEQSNDSQ 307

The following BLAST results are available for this feature:
BLAST of IVF0013352 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0013352 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DBZ55.1e-3379.41Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7VLG06.7e-3380.20Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A5A7TVR81.5e-3278.43Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A5D3C2Z51.5e-3278.43Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7VIL74.3e-3278.43Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
BLAST of IVF0013352 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK21104.16.21e-4479.41formin-like protein 4 isoform X2 [Cucumis melo var. makuwa][more]
KAA0067296.18.81e-4480.20formin-like protein 4 isoform X2 [Cucumis melo var. makuwa][more]
KAA0068182.11.02e-4278.43formin-like protein 4 isoform X2 [Cucumis melo var. makuwa][more]
KAA0046978.14.08e-4278.43formin-like protein 4 isoform X2 [Cucumis melo var. makuwa][more]
TYK04806.16.19e-4278.43formin-like protein 4 isoform X2 [Cucumis melo var. makuwa][more]
BLAST of IVF0013352 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0013352.1IVF0013352.1mRNA