IVF0013335 (gene) Melon (IVF77) v1

Overview


Name	IVF0013335
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	H/ACA ribonucleoprotein complex subunit
Location	chr08: 23378596 .. 23380360 (-)
RNA-Seq Expression	IVF0013335
Synteny	IVF0013335

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTGCAATGAGCCTCCGGTAAACAAAAGCTCACTCCTTTTCTCCTTTCCCCACATCAAGAGCATAAGAATGAGACCTCCAAGAGGCGGCGGCGGCTTCAGGGGAGGCCGTGATGGTGGTAGAGGAGGTGGACGTGGCGGCGGTGGCAGGGGAGGTGGCCGCTTTGGTGGTCGTGGAGGCGGAGGCTTCCGTGACGAGGGTCCTCCATCTGAAGTCGTTGGTTCGTATCTACCATTATTTGCTTTTTCCTTCATTTTTCGCTTCTTTGCTTGCTACCTTGATGCTTTCAGAAACAGTTTTAGTTACAATGCGATGTTCACTTGGGCTCCTTAAGGCAGACTAGTTATTGGTATTTGCGTTTGTATAATCGGAATTAGCGATGGATTCTGCTTTTGAACTTTCCCTCTCTCTAGCTGTTTGAACTTTGAAGTTTCAAGTCTTAAGAATGAATCGCAGAAGTTCACCTATATTCATCGCTAAAAAGGATTTTTTTCCCTTGCTACAGAGGTTTCTACTTTTCTTCATGCATGTGAGGGAGATGCAGTCACAAAGCTCACAAATGAGAAGATTCCTTTCTTTAATGCCCCTATTTATCTTCAGAACAAGACTCAGATAGGGAAAGTGGATGAAATTTTCGGCCCCATCAATGAATCTGTGAGTTCACTGGCCCTGATTTTGTTTGTTGTTTAGTTTTGATATATGATGAAAGGTGTTGTTTTCATTAAAAATGATGATAAATGATTGTTTTTGTTAATCTGATTCCAGTACTTCTCGATCAAAATGATGGAAGGAATTGTCGCAACCTCTTACGCTTCTGGGGATAAATTTTATATTGATCCTGCTAAACTCCTACCACTTGCTAGATTTCTTCCACAACCGAAGTACGTAATCCATCTCTTCCCTTTTCCCCACCTCAAATGAGGTCTAGAATTTGAGTTTGTTCATCAAGATGTTTATTAACATCATTTTCCAAGTTATTGCTTATGTTCAAGAGGGTTTTATAAGGGTTTTTATGGTACCGTAATAAGAAAGAAAGTGCTTTTTTGGTGCCCATTGTACGTAGCTTTAGGTTTATTGTTCAGGAGTAGTTTGGATAGAGTTTCGGTTTTTGTTTTTGTTTTTTTTTTTTTTTTGCATTTTTCTTTGTTTTTGTTGGATCTTGAACGGTGGAGTAATCAGTAAAACAGTCTATTGTAGTTGAAACTTTGGCCTCCAAATTGAGTAAAATCACGAGTAACTGGAAATAGTGGTGCAATCCTGAATAGAATTTTGTCAGTTTTTATTTTATTTTTATTTTTATTGAGTGTTTAGATAGCACATACATTGTTCGCTATGGTTCCAAATTCTCGTAATTAAACTAACAATGTAGGTTCATATTATGAGGTCTGATGTGGCTGATACAAAATTCAAAAACCTATCTTTTGTGCTTCTATATCTTATTGCTTCATTAAGCTGATGTTATTCTTCAGTGGCCCTATTTTGTGTTGAGATAAACAATTTTTAAAATGGAAAGAATCAAGGAACAAGTGAGGAATGCTTCACAACGTTTGTGTTAGATTCAGTATAGAAATAACATTTGTCTGTTCATTATTTCAGGGACAGTTTCCCTCTAGAGGCGGAGGTCGTGGAGGGGGCAGAGGTGGTGGCAGAGGTGGCCGTGGGGGTGGTGGCTTTCGTGGAAGAGGTGGCCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGTGGCTTTAGGGGGAGAGGAAGATTCTAG

mRNA sequence

ATTTTGCAATGAGCCTCCGGTAAACAAAAGCTCACTCCTTTTCTCCTTTCCCCACATCAAGAGCATAAGAATGAGACCTCCAAGAGGCGGCGGCGGCTTCAGGGGAGGCCGTGATGGTGGTAGAGGAGGTGGACGTGGCGGCGGTGGCAGGGGAGGTGGCCGCTTTGGTGGTCGTGGAGGCGGAGGCTTCCGTGACGAGGGTCCTCCATCTGAAGTCGTTGAGGTTTCTACTTTTCTTCATGCATGTGAGGGAGATGCAGTCACAAAGCTCACAAATGAGAAGATTCCTTTCTTTAATGCCCCTATTTATCTTCAGAACAAGACTCAGATAGGGAAAGTGGATGAAATTTTCGGCCCCATCAATGAATCTTACTTCTCGATCAAAATGATGGAAGGAATTGTCGCAACCTCTTACGCTTCTGGGGATAAATTTTATATTGATCCTGCTAAACTCCTACCACTTGCTAGATTTCTTCCACAACCGAAGTACGGACAGTTTCCCTCTAGAGGCGGAGGTCGTGGAGGGGGCAGAGGTGGTGGCAGAGGTGGCCGTGGGGGTGGTGGCTTTCGTGGAAGAGGTGGCCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGTGGCTTTAGGGGGAGAGGAAGATTCTAG

Coding sequence (CDS)

ATGAGACCTCCAAGAGGCGGCGGCGGCTTCAGGGGAGGCCGTGATGGTGGTAGAGGAGGTGGACGTGGCGGCGGTGGCAGGGGAGGTGGCCGCTTTGGTGGTCGTGGAGGCGGAGGCTTCCGTGACGAGGGTCCTCCATCTGAAGTCGTTGAGGTTTCTACTTTTCTTCATGCATGTGAGGGAGATGCAGTCACAAAGCTCACAAATGAGAAGATTCCTTTCTTTAATGCCCCTATTTATCTTCAGAACAAGACTCAGATAGGGAAAGTGGATGAAATTTTCGGCCCCATCAATGAATCTTACTTCTCGATCAAAATGATGGAAGGAATTGTCGCAACCTCTTACGCTTCTGGGGATAAATTTTATATTGATCCTGCTAAACTCCTACCACTTGCTAGATTTCTTCCACAACCGAAGTACGGACAGTTTCCCTCTAGAGGCGGAGGTCGTGGAGGGGGCAGAGGTGGTGGCAGAGGTGGCCGTGGGGGTGGTGGCTTTCGTGGAAGAGGTGGCCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGTGGCTTTAGGGGGAGAGGAAGATTCTAG

Protein sequence

MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFYIDPAKLLPLARFLPQPKYGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPPRGGGRGGGFRGRGRF

Homology

[Close]

BLAST of IVF0013335 vs. ExPASy Swiss-Prot
Match: Q8VZT0 (Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At3g03920 PE=2 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 5.9e-58
Identity = 163/206 (79.13%), Postives = 169/206 (82.04%), Query Frame = 0


Query: 1   MRPP-RGGGGF--RGGRDGGRGGGR--GGGGR---GGGRFGGRGG--GGFRDEGPPSEVV 60
           MRPP RGGGGF  RGGRDGG GGGR  GGGGR   GGGRFGG GG  GGFRDEGPPSEVV
Sbjct: 1   MRPPMRGGGGFRGRGGRDGG-GGGRFGGGGGRFGGGGGRFGGGGGRFGGFRDEGPPSEVV 60

Query: 61  EVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGI 120
           EV+TF+HACEGDAVTKL+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FSIKMMEGI
Sbjct: 61  EVATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGI 120

Query: 121 VATSYASGDKFYIDPAKLLPLARFLPQPKYGQFPSRGGGRGGGRGGGRG-GRGGGGFRGR 180
           VATSY+ GDKF+IDP KLLPLARFLPQPK GQ     GG G GRG  RG GRGG   RGR
Sbjct: 121 VATSYSPGDKFFIDPYKLLPLARFLPQPK-GQSTGGRGGAGRGRGDSRGRGRGGSFSRGR 180

Query: 181 GGPRGGRGGPPRGGGRGGGFRGRGRF 196
           G PRGGR  PPRGG R G FRGRGRF
Sbjct: 181 GAPRGGR-FPPRGGSR-GSFRGRGRF 202

[Close]

BLAST of IVF0013335 vs. ExPASy Swiss-Prot
Match: Q9FK53 (H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At5g18180 PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.9e-48
Identity = 145/195 (74.36%), Postives = 151/195 (77.44%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60
           MRPPRGGG FRG   GGR  G  G GRG GR  GR GGG  DEGPPSEVVEV+TFLHACE
Sbjct: 1   MRPPRGGGSFRG--RGGRDNGGRGRGRGRGR--GRFGGGNYDEGPPSEVVEVATFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120
           GDAV KL+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FSIKM EGIVATSY+ GDK
Sbjct: 61  GDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATSYSQGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKYGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRG-GRGGP 180
           F+I P KLLPL+RFLPQPK GQ   RG GR   RG G   RG G FRGRG PRG  RG  
Sbjct: 121 FFISPEKLLPLSRFLPQPK-GQSGGRGEGRVPPRGRG-PPRGRGNFRGRGAPRGASRGFQ 180

Query: 181 PRGGGRGGGFRGRGR 195
           PRGG R GGFRGRGR
Sbjct: 181 PRGGPR-GGFRGRGR 188

[Close]

BLAST of IVF0013335 vs. ExPASy Swiss-Prot
Match: Q2HH48 (H/ACA ribonucleoprotein complex subunit GAR1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=GAR1 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.7e-39
Identity = 123/209 (58.85%), Postives = 137/209 (65.55%), Query Frame = 0


Query: 17  GRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACEGDAVTKLTNEKIPFFN 76
           G   GRGGGG GGGR GGRGG   RD GPP+ V+E+  F+HACEG+ V + TN K+P FN
Sbjct: 5   GAPRGRGGGGFGGGRGGGRGGFQQRDMGPPATVLEMGKFIHACEGEMVIESTNPKVPHFN 64

Query: 77  APIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFYIDPAKLLPLARFLP 136
           APIYL+NKT +GKVDE+ GPIN+ YF+IK  EGI ATS+  GDKFYI   KLLPL RFLP
Sbjct: 65  APIYLENKTAVGKVDEVLGPINQVYFTIKPSEGIQATSFKYGDKFYIAGEKLLPLERFLP 124

Query: 137 QPK------------------------YGQFPSRGGGRGGGRGGGRGGRGGGGF-----R 196
           +PK                         G   SRGGGRGGGRGG  G RGGGGF      
Sbjct: 125 KPKPPPGTVSKVKKPSRGGAARGGRGGPGGGFSRGGGRGGGRGGFGGSRGGGGFGGGFGG 184

[Close]

BLAST of IVF0013335 vs. ExPASy Swiss-Prot
Match: Q5RJV1 (H/ACA ribonucleoprotein complex subunit 1 OS=Xenopus tropicalis OX=8364 GN=gar1 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.3e-38
Identity = 128/202 (63.37%), Postives = 144/202 (71.29%), Query Frame = 0


Query: 5   RGGGGFRGGRD-GGRGGGRGGGGRGGGRFG-GRGGG------GFRDEGPPSEVVEVSTFL 64
           RGGGG RGG   GGRGGGRGG G+GGGR G GRGGG      G  D+GPP  VVEV  F+
Sbjct: 11  RGGGGGRGGGGFGGRGGGRGGYGQGGGRGGFGRGGGRGGFNRGGYDQGPPESVVEVGEFM 70

Query: 65  HACEGDAVTK-LTNE-KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATS 124
           H CE D V K +T E ++P+FNAPIYL+NK QIGKVDEIFG + + YFSIK+ E + A+S
Sbjct: 71  HPCEDDVVCKCITQENRVPYFNAPIYLENKEQIGKVDEIFGQLRDFYFSIKLSENMKASS 130

Query: 125 YASGDKFYIDPAKLLPLARFLPQPKYGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRG 184
           +    KFYIDPAKLLPL RFLP+P   + P RGGGRGGGRGGGRG  GG G  G GG RG
Sbjct: 131 FKKLQKFYIDPAKLLPLQRFLPRPPGEKGPPRGGGRGGGRGGGRGRGGGRG--GGGGFRG 190

Query: 185 GRGGPPRGGG-----RGGGFRG 192
           GRGG   GGG     RGGGFRG
Sbjct: 191 GRGGGFGGGGGFRGSRGGGFRG 210

[Close]

BLAST of IVF0013335 vs. ExPASy Swiss-Prot
Match: Q6FSB0 (H/ACA ribonucleoprotein complex subunit GAR1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=GAR1 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.2e-36
Identity = 119/205 (58.05%), Postives = 135/205 (65.85%), Query Frame = 0


Query: 10  FRGGRDGGRGGGRGG-GGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACEGDAVTKLT 69
           FRGG  GGRGG RGG GGRGG R     GG    +GPP  V+E+  F+H CEGD V +  
Sbjct: 3   FRGGFRGGRGGSRGGFGGRGGAR-----GGRPIQQGPPDTVLEMGEFMHPCEGDVVCRSI 62

Query: 70  NEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFYIDPAKL 129
           N K+P+FNAPIYL+NKTQ+GKVDEI GP+NE YF+IK  EG+ ATS+  GDKFYI P KL
Sbjct: 63  NTKVPYFNAPIYLENKTQVGKVDEILGPLNEVYFTIKCGEGVQATSFKEGDKFYIAPDKL 122

Query: 130 LPLARFLPQPKYGQFP-------------SRGGGRG--GGRGGGRGGRGG-----GGFRG 189
           LP+ RF+P+PK    P              RGG RG  GGRGG RGG GG     GGF G
Sbjct: 123 LPIERFIPKPKVAGPPKPKNKKKRSGAPAGRGGARGGFGGRGGSRGGFGGRGGSRGGFGG 182

Query: 190 RGGPRGGRGGPPRGGGRGGGFRGRG 194
           RGG RGG GG  RGG R GGF GRG
Sbjct: 183 RGGSRGGFGG--RGGSR-GGFGGRG 199

[Close]

BLAST of IVF0013335 vs. ExPASy TrEMBL
Match: A0A5D3C949 (H/ACA ribonucleoprotein complex subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00380 PE=3 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.3e-89
Identity = 194/195 (99.49%), Postives = 194/195 (99.49%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60
           MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE
Sbjct: 1   MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKYGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPP 180
           FYIDPAKLLPLARFLPQPK GQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPP
Sbjct: 121 FYIDPAKLLPLARFLPQPK-GQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPP 180

Query: 181 RGGGRGGGFRGRGRF 196
           RGGGRGGGFRGRGRF
Sbjct: 181 RGGGRGGGFRGRGRF 194

[Close]

BLAST of IVF0013335 vs. ExPASy TrEMBL
Match: A0A0A0KWF0 (H/ACA ribonucleoprotein complex subunit OS=Cucumis sativus OX=3659 GN=Csa_4G192120 PE=3 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.3e-89
Identity = 194/195 (99.49%), Postives = 194/195 (99.49%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60
           MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE
Sbjct: 1   MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKYGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPP 180
           FYIDPAKLLPLARFLPQPK GQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPP
Sbjct: 121 FYIDPAKLLPLARFLPQPK-GQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPP 180

Query: 181 RGGGRGGGFRGRGRF 196
           RGGGRGGGFRGRGRF
Sbjct: 181 RGGGRGGGFRGRGRF 194

[Close]

BLAST of IVF0013335 vs. ExPASy TrEMBL
Match: A0A1S3B5D8 (H/ACA ribonucleoprotein complex subunit OS=Cucumis melo OX=3656 GN=LOC103485980 PE=3 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.3e-89
Identity = 194/195 (99.49%), Postives = 194/195 (99.49%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60
           MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE
Sbjct: 1   MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKYGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPP 180
           FYIDPAKLLPLARFLPQPK GQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPP
Sbjct: 121 FYIDPAKLLPLARFLPQPK-GQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPP 180

Query: 181 RGGGRGGGFRGRGRF 196
           RGGGRGGGFRGRGRF
Sbjct: 181 RGGGRGGGFRGRGRF 194

[Close]

BLAST of IVF0013335 vs. ExPASy TrEMBL
Match: A0A6J1HPE3 (H/ACA ribonucleoprotein complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111466108 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 4.5e-85
Identity = 192/199 (96.48%), Postives = 193/199 (96.98%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRD---GGRGGGRGGGG-RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGGGFRGGRD   GGRGGGRGGGG RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPKYGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGR 180
           SGDKFYIDPAKLLPLARFLPQPK GQF +RGGGRGGGRGGGRGGRGGGGFRGRGGPRGGR
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPK-GQFAARGGGRGGGRGGGRGGRGGGGFRGRGGPRGGR 180

Query: 181 GGPPRGGGRGGGFRGRGRF 196
           GGPPRGGGRGGGFRGRGRF
Sbjct: 181 GGPPRGGGRGGGFRGRGRF 198

[Close]

BLAST of IVF0013335 vs. ExPASy TrEMBL
Match: A0A6J1EGP8 (H/ACA ribonucleoprotein complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111432388 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 4.5e-85
Identity = 192/199 (96.48%), Postives = 193/199 (96.98%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRD---GGRGGGRGGGG-RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGGGFRGGRD   GGRGGGRGGGG RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPKYGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGR 180
           SGDKFYIDPAKLLPLARFLPQPK GQF +RGGGRGGGRGGGRGGRGGGGFRGRGGPRGGR
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPK-GQFAARGGGRGGGRGGGRGGRGGGGFRGRGGPRGGR 180

Query: 181 GGPPRGGGRGGGFRGRGRF 196
           GGPPRGGGRGGGFRGRGRF
Sbjct: 181 GGPPRGGGRGGGFRGRGRF 198

[Close]

BLAST of IVF0013335 vs. NCBI nr
Match: XP_004147534.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis sativus] >XP_008441980.1 PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis melo] >XP_038881914.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Benincasa hispida] >KAA0060108.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis melo var. makuwa] >TYK08423.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 335 bits (858), Expect = 7.04e-115
Identity = 194/195 (99.49%), Postives = 194/195 (99.49%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60
           MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE
Sbjct: 1   MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKYGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPP 180
           FYIDPAKLLPLARFLPQPK GQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPP
Sbjct: 121 FYIDPAKLLPLARFLPQPK-GQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPP 180

Query: 181 RGGGRGGGFRGRGRF 195
           RGGGRGGGFRGRGRF
Sbjct: 181 RGGGRGGGFRGRGRF 194

[Close]

BLAST of IVF0013335 vs. NCBI nr
Match: XP_022925015.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita moschata] >XP_022966461.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita maxima] >XP_023518192.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 320 bits (821), Expect = 3.52e-109
Identity = 192/199 (96.48%), Postives = 193/199 (96.98%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGG---RGGGRGGGG-RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGGGFRGGRDGG   RGGGRGGGG RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPKYGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGR 180
           SGDKFYIDPAKLLPLARFLPQPK GQF +RGGGRGGGRGGGRGGRGGGGFRGRGGPRGGR
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPK-GQFAARGGGRGGGRGGGRGGRGGGGFRGRGGPRGGR 180

Query: 181 GGPPRGGGRGGGFRGRGRF 195
           GGPPRGGGRGGGFRGRGRF
Sbjct: 181 GGPPRGGGRGGGFRGRGRF 198

[Close]

BLAST of IVF0013335 vs. NCBI nr
Match: KAG6595505.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 317 bits (813), Expect = 5.83e-108
Identity = 191/199 (95.98%), Postives = 192/199 (96.48%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGG---RGGGRGGGG-RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGGGFRGGRDGG   RGGGRGGGG RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120
           HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPKYGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGR 180
           SGDKFYIDPAKLLPLARFLPQPK GQF +RGGGRGGGRGGGRGGRGGGGFRGRGGPRGGR
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPK-GQFAARGGGRGGGRGGGRGGRGGGGFRGRGGPRGGR 180

Query: 181 GGPPRGGGRGGGFRGRGRF 195
           GGP RGGGRGGGFRGRGRF
Sbjct: 181 GGPARGGGRGGGFRGRGRF 198

[Close]

BLAST of IVF0013335 vs. NCBI nr
Match: KGN53959.2 (hypothetical protein Csa_021575 [Cucumis sativus])

HSP 1 Score: 312 bits (799), Expect = 4.38e-106
Identity = 181/195 (92.82%), Postives = 181/195 (92.82%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60
           MRPPRGGGGFRGGRDG             GRFGGRGGGGFRDEGPPSEVVEVSTFLHACE
Sbjct: 1   MRPPRGGGGFRGGRDG-------------GRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKYGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPP 180
           FYIDPAKLLPLARFLPQPK GQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPP
Sbjct: 121 FYIDPAKLLPLARFLPQPK-GQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPP 180

Query: 181 RGGGRGGGFRGRGRF 195
           RGGGRGGGFRGRGRF
Sbjct: 181 RGGGRGGGFRGRGRF 181

[Close]

BLAST of IVF0013335 vs. NCBI nr
Match: XP_023544656.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita pepo subsp. pepo] >XP_023544657.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312 bits (800), Expect = 4.85e-106
Identity = 184/195 (94.36%), Postives = 188/195 (96.41%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60
           MRPPRGGGGFRGGRDGG GG  GG GRGGGRFGGRGGGGFRDEGPPSEVVEVS+FLHACE
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY+SGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKYGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPP 180
           FYIDPAKLLPLARFLPQPK GQF +RGGGRGGGRGGGRGGRG GGFRGRGGPRGGRGGPP
Sbjct: 121 FYIDPAKLLPLARFLPQPK-GQFAARGGGRGGGRGGGRGGRGAGGFRGRGGPRGGRGGPP 180

Query: 181 RGGGRGGGFRGRGRF 195
           RGGGRGGGFRGRGR+
Sbjct: 181 RGGGRGGGFRGRGRY 194

[Close]

BLAST of IVF0013335 vs. TAIR 10
Match: AT3G03920.1 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein )

HSP 1 Score: 225.3 bits (573), Expect = 4.2e-59
Identity = 163/206 (79.13%), Postives = 169/206 (82.04%), Query Frame = 0


Query: 1   MRPP-RGGGGF--RGGRDGGRGGGR--GGGGR---GGGRFGGRGG--GGFRDEGPPSEVV 60
           MRPP RGGGGF  RGGRDGG GGGR  GGGGR   GGGRFGG GG  GGFRDEGPPSEVV
Sbjct: 1   MRPPMRGGGGFRGRGGRDGG-GGGRFGGGGGRFGGGGGRFGGGGGRFGGFRDEGPPSEVV 60

Query: 61  EVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGI 120
           EV+TF+HACEGDAVTKL+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FSIKMMEGI
Sbjct: 61  EVATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGI 120

Query: 121 VATSYASGDKFYIDPAKLLPLARFLPQPKYGQFPSRGGGRGGGRGGGRG-GRGGGGFRGR 180
           VATSY+ GDKF+IDP KLLPLARFLPQPK GQ     GG G GRG  RG GRGG   RGR
Sbjct: 121 VATSYSPGDKFFIDPYKLLPLARFLPQPK-GQSTGGRGGAGRGRGDSRGRGRGGSFSRGR 180

Query: 181 GGPRGGRGGPPRGGGRGGGFRGRGRF 196
           G PRGGR  PPRGG R G FRGRGRF
Sbjct: 181 GAPRGGR-FPPRGGSR-GSFRGRGRF 202

[Close]

BLAST of IVF0013335 vs. TAIR 10
Match: AT5G18180.1 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein )

HSP 1 Score: 193.7 bits (491), Expect = 1.3e-49
Identity = 145/195 (74.36%), Postives = 151/195 (77.44%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACE 60
           MRPPRGGG FRG   GGR  G  G GRG GR  GR GGG  DEGPPSEVVEV+TFLHACE
Sbjct: 1   MRPPRGGGSFRG--RGGRDNGGRGRGRGRGR--GRFGGGNYDEGPPSEVVEVATFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDK 120
           GDAV KL+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FSIKM EGIVATSY+ GDK
Sbjct: 61  GDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATSYSQGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKYGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRG-GRGGP 180
           F+I P KLLPL+RFLPQPK GQ   RG GR   RG G   RG G FRGRG PRG  RG  
Sbjct: 121 FFISPEKLLPLSRFLPQPK-GQSGGRGEGRVPPRGRG-PPRGRGNFRGRGAPRGASRGFQ 180

Query: 181 PRGGGRGGGFRGRGR 195
           PRGG R GGFRGRGR
Sbjct: 181 PRGGPR-GGFRGRGR 188

The following BLAST results are available for this feature:

BLAST of IVF0013335 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZT0	5.9e-58	79.13	Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis...	[more]
Q9FK53	1.9e-48	74.36	H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana...	[more]
Q2HH48	4.7e-39	58.85	H/ACA ribonucleoprotein complex subunit GAR1 OS=Chaetomium globosum (strain ATCC...	[more]
Q5RJV1	2.3e-38	63.37	H/ACA ribonucleoprotein complex subunit 1 OS=Xenopus tropicalis OX=8364 GN=gar1 ...	[more]
Q6FSB0	2.2e-36	58.05	H/ACA ribonucleoprotein complex subunit GAR1 OS=Candida glabrata (strain ATCC 20...	[more]

BLAST of IVF0013335 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C949	2.3e-89	99.49	H/ACA ribonucleoprotein complex subunit OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0KWF0	2.3e-89	99.49	H/ACA ribonucleoprotein complex subunit OS=Cucumis sativus OX=3659 GN=Csa_4G1921...	[more]
A0A1S3B5D8	2.3e-89	99.49	H/ACA ribonucleoprotein complex subunit OS=Cucumis melo OX=3656 GN=LOC103485980 ...	[more]
A0A6J1HPE3	4.5e-85	96.48	H/ACA ribonucleoprotein complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111466...	[more]
A0A6J1EGP8	4.5e-85	96.48	H/ACA ribonucleoprotein complex subunit OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of IVF0013335 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147534.1	7.04e-115	99.49	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis sativ...	[more]
XP_022925015.1	3.52e-109	96.48	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita mos...	[more]
KAG6595505.1	5.83e-108	95.98	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucu...	[more]
KGN53959.2	4.38e-106	92.82	hypothetical protein Csa_021575 [Cucumis sativus]	[more]
XP_023544656.1	4.85e-106	94.36	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita pep...	[more]

BLAST of IVF0013335 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03920.1	4.2e-59	79.13	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	[more]
AT5G18180.1	1.3e-49	74.36	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038664	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	GENE3D	2.40.10.230	Probable tRNA pseudouridine synthase domain	coord: 45..136 e-value: 4.1E-42 score: 143.9
IPR007504	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	PFAM	PF04410	Gar1	coord: 40..135 e-value: 5.6E-35 score: 120.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..195
None	No IPR available	PANTHER	PTHR23237:SF12	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT	coord: 1..194
None	No IPR available	PANTHER	PTHR23237	NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1	coord: 1..194
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 50..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013335.2	IVF0013335.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0000454	snoRNA guided rRNA pseudouridine synthesis
biological_process	GO:0030433	ubiquitin-dependent ERAD pathway
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0031429	box H/ACA snoRNP complex
cellular_component	GO:0000839	Hrd1p ubiquitin ligase ERAD-L complex
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
molecular_function	GO:0034513	box H/ACA snoRNA binding
molecular_function	GO:0051787	misfolded protein binding
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:1990381	ubiquitin-specific protease binding