IVF0013322 (gene) Melon (IVF77) v1

Overview


Name	IVF0013322
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	18S rRNA aminocarboxypropyltransferase
Location	chr07: 21078331 .. 21080653 (-)
RNA-Seq Expression	IVF0013322
Synteny	IVF0013322

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGAGATGAATGGTAGTGATTAGATTCATACTCAAAGGCATATAAACATTTTGTTGGTTCCTATATTGAACCTCTTCAATTTGAAAATTTTGGCAGTCCAGTGGGGGTGAATTGTGTCTCCAAAGAAGATCATAGTCTTCTTAAACAAAAAGGATTAGCAGTTGTGGATTGCTCATGGGCACGGTTGGGTGATGTTCCATTTGTGAAATTGCGATGTGCTGCTCCTCGCCTATGTAAGAGATTTACATCTTCAATATGATAGTCTTCTGTAGTTCTTAACCTTGCTGTCATTTGATTGTTAGTAATTTCTAAACTGCCATTGAGATTTCACTAAATTTGTTGAAGTGCATCCTGGCTAGACTCGATTTGGTTGGCTTTGGCAATTACTATACCATGGTTTTTTTCTCTTGGTTCTGGTTTTCACATTCTGCAAATTGTTTATGCAAATATTTGTAGTACCTTGGCTAGTAGCAGCAAACCCAGTAAATTATGGTCGACCATGTGAGTTATCTTGCGTGGAAGCATTAGCCGCCGCTCTAATCATATGGTAACGCACCTTTATCTCATCTCTTCTCTTGTGTGCAACTTTGTTCTAAATTCTGCTGAGATTCATGTCAATTACTAATCTCATGTCATCGTGTATCCTTTTGCCATAAATTTGGTGCTATTAGCTTACTTTGGATAATTCAGGGAAAATGATCTAAGATTTATAAGGTGTTGTACTTCTTTCATTGGAAGTGAGAGAATAACATACTGCCCTGCTGGATTGTTCAAATTTGGCAAATTGCTTCAGAGTAGTCTTATTAGTCACTTCACTTAGAACTCTGATGAAGTTTTTTGTATGGTTTTGTCAGTCCCTTTGGTTCTAATTAGTCACAAAGAAAATTTATTGTCGTTGCTGATGTTGTGACTAACAAAGTTGTAGATCTCCAGTAGTAACCCACTAATCCTCCTTTAGCAACCTAAGACTTCCAGAGACTGTCAATACAATATAATTTGTGGTAATTGTTAATGTTAACACTCTGCTTATCACTTTTTTAATGGATGTTTAAACTACTTTATAGCTGGAAATAGAAATATGATTATTTATTTGTTGGTGTAGTTGAGCAAGCAATCTGTTCATTTTGTTTAACTATCTCTATTGAACTGAACTAACAGTGGGGAAGGGGAAACAGCAGATCTGTTGCTTAGTAAATTCAAGTGGGGCCATGCTTTTCTTTCCGTTAATAGGTATGTTTTATTATTTAACTATTAAATTTTTAATTCTAAAACAAACACGATATAATATGCTGGTTCATCCATAATAATTGCAACCTACTTGCATCAAATGAAAATTAAAAGGCTTGTTTAGAAATGATTAAGGGCTTTTTCAAAACACTTCATTTAAAAAGTTGTTCCAAAACGGCACTCACTTAACATATTCTAAATGACCTGCCTGTTAGCTCATAATGGCCTGAGATATTTGATACTAAATTACAAATTTAGCGCCATTTAGCCTTCAAGTATGTAGAGAAATTTTAGGCTTATAAATGGCGCTATTATTTGAGCTCTTCCCATGACCATGCTTGCTTATTTTTCTTTTGTATTACACAGAGAACTTCTAAAACAATACTCAGCATGTGAGAATAGTGCTGATATTATTTCGGTCCAGAATGCTTGGTTATCGCAACAACGACAAGTCCCAAAAGAACCGCATAATGTCGAAGGTAATCTTTTGAATCAATTACACTGATCTCATGTTTGTTTTGCACCTTAGTTTGAAGAAAATGGAGTTGCATCATACTCTCTATATGTGTGGAGAAAATGTTGCTGAAGTACTTTGAGTTTATATCCACTGGTTATTAGGAAAATGTAGATTTTCAAGTTCACATCCAACTGTTTGGAAGAGACAATGACATTGTGATAGTCATGTTGAAGAAATTTTTTGTGTCCATAATTATAAACATTAACCTTACTGACAAGAGTCAGCAACCAAGCCGATCAAAATCAAACCAAATTGACTCTAATCAACATTATCCAACCAAAATAAACAGATAGACTGTTTTTGGGAGTTTACATTTATGAAAACCCAACCAATTTGGGCTAAATCAATGAAGTAAAGGCCCTTTTGATTTGGGACTAGAGTTGTTTTCCAGCCATGGGAAGGACTTGTGAAGGTTTCATTCAAACGAGACTGTCTTTATGTTGTAGGTGCAGATAAGTCGTCTGTGAGCGAACATGACGAGGATTCCGATGATTCAGAAGATGGACTTCCACCATTGGAGAAGAATCTAAATCACTTGACCTTGCAGCAAGAAAGCGATGAAGAGAGTGAGTAA

mRNA sequence

ATGAAAGGAGATGAATGTCCAGTGGGGGTGAATTGTGTCTCCAAAGAAGATCATAGTCTTCTTAAACAAAAAGGATTAGCAGTTGTGGATTGCTCATGGGCACGGTTGGGTGATGTTCCATTTGTGAAATTGCGATGTGCTGCTCCTCGCCTATTACCTTGGCTAGTAGCAGCAAACCCAGTAAATTATGGTCGACCATGTGAGTTATCTTGCGTGGAAGCATTAGCCGCCGCTCTAATCATATGTGGGGAAGGGGAAACAGCAGATCTGTTGCTTAGTAAATTCAAGTGGGGCCATGCTTTTCTTTCCGTTAATAGAGAACTTCTAAAACAATACTCAGCATGTGAGAATAGTGCTGATATTATTTCGGTCCAGAATGCTTGGTTATCGCAACAACGACAAGTCCCAAAAGAACCGCATAATGTCGAAGGTGCAGATAAGTCGTCTGTGAGCGAACATGACGAGGATTCCGATGATTCAGAAGATGGACTTCCACCATTGGAGAAGAATCTAAATCACTTGACCTTGCAGCAAGAAAGCGATGAAGAGAGTGAGTAA

Coding sequence (CDS)

ATGAAAGGAGATGAATGTCCAGTGGGGGTGAATTGTGTCTCCAAAGAAGATCATAGTCTTCTTAAACAAAAAGGATTAGCAGTTGTGGATTGCTCATGGGCACGGTTGGGTGATGTTCCATTTGTGAAATTGCGATGTGCTGCTCCTCGCCTATTACCTTGGCTAGTAGCAGCAAACCCAGTAAATTATGGTCGACCATGTGAGTTATCTTGCGTGGAAGCATTAGCCGCCGCTCTAATCATATGTGGGGAAGGGGAAACAGCAGATCTGTTGCTTAGTAAATTCAAGTGGGGCCATGCTTTTCTTTCCGTTAATAGAGAACTTCTAAAACAATACTCAGCATGTGAGAATAGTGCTGATATTATTTCGGTCCAGAATGCTTGGTTATCGCAACAACGACAAGTCCCAAAAGAACCGCATAATGTCGAAGGTGCAGATAAGTCGTCTGTGAGCGAACATGACGAGGATTCCGATGATTCAGAAGATGGACTTCCACCATTGGAGAAGAATCTAAATCACTTGACCTTGCAGCAAGAAAGCGATGAAGAGAGTGAGTAA

Protein sequence

MKGDECPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEPHNVEGADKSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEESE

Homology

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BLAST of IVF0013322 vs. ExPASy Swiss-Prot
Match: Q5HZH2 (18S rRNA aminocarboxypropyltransferase OS=Mus musculus OX=10090 GN=Tsr3 PE=1 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-36
Identity = 81/179 (45.25%), Postives = 105/179 (58.66%), Query Frame = 0


Query: 7   PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 66
           PVG   VS  D  L+ Q G+AV+DCSWA+L D PF K+R +  RLLP+LVAANPVNYGRP
Sbjct: 100 PVGTEYVSPADRQLVAQSGVAVIDCSWAKLDDTPFQKMRGSHLRLLPYLVAANPVNYGRP 159

Query: 67  CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN 126
           C+LSCVEA AAA  I G  + A +LL KFKWG  FL +NRELL +Y+AC    +++  + 
Sbjct: 160 CKLSCVEAFAAAFCIVGFSDLAVILLRKFKWGKGFLDLNRELLDKYAACRGPEEVLQAEQ 219

Query: 127 AWLSQQRQVPKE---PHNVEGA--------------------DKSSVSEHDEDSDDSED 163
            +L+  R  P+E   P +V+                      D     EH EDS++  D
Sbjct: 220 GYLASTRDTPEEDIDPFDVDSGREFVNLNRPVASTRLPEDMDDTDGSEEHSEDSEEDSD 278

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BLAST of IVF0013322 vs. ExPASy Swiss-Prot
Match: Q9UJK0 (18S rRNA aminocarboxypropyltransferase OS=Homo sapiens OX=9606 GN=TSR3 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.1e-32
Identity = 77/177 (43.50%), Postives = 107/177 (60.45%), Query Frame = 0


Query: 7   PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 66
           PVG    S  D  L+ Q G+AV+DCSWARL + PF K+R +  RLLP+LVAANPVNYGRP
Sbjct: 100 PVGKQYASPADRQLVAQSGVAVIDCSWARLDETPFGKMRGSHLRLLPYLVAANPVNYGRP 159

Query: 67  CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN 126
             LSCVEA AA   I G  + A +LL KFKWG  FL +NR+LL +Y+AC +  +++  + 
Sbjct: 160 YRLSCVEAFAATFCIVGFPDLAVILLRKFKWGKGFLDLNRQLLDKYAACGSPEEVLQAEQ 219

Query: 127 AWLSQQRQVPKE----PHNVEGADK----------SSVSEHDEDSDDSEDGLPPLEK 170
            +L+  ++ P+E    P +V+   +          + +    +DSD SED  P  E+
Sbjct: 220 EFLANAKESPQEEEIDPFDVDSGREFGNPNRPVASTRLPSDTDDSDASEDPGPGAER 276

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BLAST of IVF0013322 vs. ExPASy Swiss-Prot
Match: Q12094 (18S rRNA aminocarboxypropyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TSR3 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.6e-26
Identity = 68/170 (40.00%), Postives = 96/170 (56.47%), Query Frame = 0


Query: 7   PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 66
           P G   V  +D  +++Q G +VV+CSWARL +VPF K+     RLLP+LVAAN VNYGRP
Sbjct: 88  PNGKGVVCPDDLEIVEQHGASVVECSWARLEEVPFNKIGGKHERLLPYLVAANQVNYGRP 147

Query: 67  CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN 126
             L+CVEALAA   I G  + A  LLS F WG  FL +N+ELL+ Y  C +   +   + 
Sbjct: 148 WRLNCVEALAACFAIVGRMDWASELLSHFSWGMGFLELNKELLEIYQQCTDCDSVKRAEE 207

Query: 127 AWL------SQQRQVPKEPHNV---------EGADKSSVSEHDEDSDDSE 162
            WL      +Q+R+   +  ++             +S  SE +E+S+ S+
Sbjct: 208 EWLQKLEKETQERKSRAKEEDIWMMGNINRRGNGSQSDTSESEENSEQSD 257

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BLAST of IVF0013322 vs. ExPASy Swiss-Prot
Match: Q8TXM4 (16S rRNA aminocarboxypropyltransferase OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) OX=190192 GN=MK0638 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.6e-25
Identity = 58/123 (47.15%), Postives = 77/123 (62.60%), Query Frame = 0


Query: 7   PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 66
           P     +S+ED     ++GL  VDCSW  +        R    R+LP+L+AANPVNYG+P
Sbjct: 43  PTVEKALSREDRDAALERGLVAVDCSWEHVHRYFGPLRRRCRHRILPYLIAANPVNYGKP 102

Query: 67  CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN 126
           C+LS VEALAAAL I G    A+  +S+FKWG AFL +NRE L+ Y   E SA+++ VQ 
Sbjct: 103 CKLSTVEALAAALYILGFRREAEEFISRFKWGPAFLELNRERLEAYRRAETSAEVVRVQE 162

Query: 127 AWL 130
            +L
Sbjct: 163 EFL 165

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BLAST of IVF0013322 vs. ExPASy Swiss-Prot
Match: Q10409 (18S rRNA aminocarboxypropyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tsr3 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.8e-25
Identity = 71/191 (37.17%), Postives = 98/191 (51.31%), Query Frame = 0


Query: 7   PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 66
           P G   VS  D       G +VV+CSWAR+ ++PF ++     RLLP+LVA+NPVNYGRP
Sbjct: 69  PNGKVPVSPADKEYFDNGGASVVECSWARIEEIPFSRIGGRCERLLPYLVASNPVNYGRP 128

Query: 67  CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN 126
             L+C EALAA + I G    A LL+  FKWGH+F  VN ELL  Y+ C ++ DI   + 
Sbjct: 129 WRLNCAEALAACMYIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEK 188

Query: 127 AWLSQQRQVPKEPHNVEGAD---------KSSVSEHDEDSDDSEDGLP---PLEKNLNHL 186
            +L +     +E  N    D         K +++     S+  E   P   P E +L H 
Sbjct: 189 KYLEEMEASYQEQRNQTTDDIWSAGNLNHKPTLNTSSTHSNSEESRSPLHEPSEASLAHD 248

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BLAST of IVF0013322 vs. ExPASy TrEMBL
Match: A0A1S3BX27 (18S rRNA aminocarboxypropyltransferase OS=Cucumis melo OX=3656 GN=LOC103494403 PE=3 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 8.3e-97
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 7   PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 66
           PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP
Sbjct: 89  PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 148

Query: 67  CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN 126
           CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN
Sbjct: 149 CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN 208

Query: 127 AWLSQQRQVPKEPHNVEGADKSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEESE 186
           AWLSQQRQVPKEPHNVEGADKSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEESE
Sbjct: 209 AWLSQQRQVPKEPHNVEGADKSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEESE 267

[Close]

BLAST of IVF0013322 vs. ExPASy TrEMBL
Match: A0A0A0KXU5 (18S rRNA aminocarboxypropyltransferase OS=Cucumis sativus OX=3659 GN=Csa_4G031030 PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 1.6e-95
Identity = 177/179 (98.88%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 7   PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 66
           PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP
Sbjct: 208 PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 267

Query: 67  CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN 126
           CELSCVEALAAALIICGEGETADLLL KFKWGHAFLSVNRELLKQYSACENSADIISVQN
Sbjct: 268 CELSCVEALAAALIICGEGETADLLLGKFKWGHAFLSVNRELLKQYSACENSADIISVQN 327

Query: 127 AWLSQQRQVPKEPHNVEGADKSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEESE 186
           AWLSQQRQVPKEPHNVEGADKSSVSEHDE SDDSEDGLPPLEKNLNHLTLQQESDEESE
Sbjct: 328 AWLSQQRQVPKEPHNVEGADKSSVSEHDEGSDDSEDGLPPLEKNLNHLTLQQESDEESE 386

[Close]

BLAST of IVF0013322 vs. ExPASy TrEMBL
Match: A0A1S3BXV8 (18S rRNA aminocarboxypropyltransferase OS=Cucumis melo OX=3656 GN=LOC103494403 PE=3 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 5.0e-94
Identity = 177/179 (98.88%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 7   PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 66
           PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP
Sbjct: 89  PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 148

Query: 67  CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN 126
           CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN
Sbjct: 149 CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN 208

Query: 127 AWLSQQRQVPKEPHNVEGADKSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEESE 186
           AWLSQQRQVPKEPHNVE  DKSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEESE
Sbjct: 209 AWLSQQRQVPKEPHNVE--DKSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEESE 265

[Close]

BLAST of IVF0013322 vs. ExPASy TrEMBL
Match: A0A6J1J6L0 (18S rRNA aminocarboxypropyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111483038 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 6.8e-91
Identity = 170/179 (94.97%), Postives = 173/179 (96.65%), Query Frame = 0


Query: 7   PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 66
           PVGVNCVSKEDHSLLKQ+GLAVVDCSWARLGDVPFVKLRC APRLLPWLVAANPVNYGRP
Sbjct: 89  PVGVNCVSKEDHSLLKQRGLAVVDCSWARLGDVPFVKLRCGAPRLLPWLVAANPVNYGRP 148

Query: 67  CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN 126
           CELSCVEALAAALIICGEGETADLLL KFKWGHAFLSVNRELLKQYSACENSADIISVQN
Sbjct: 149 CELSCVEALAAALIICGEGETADLLLGKFKWGHAFLSVNRELLKQYSACENSADIISVQN 208

Query: 127 AWLSQQRQVPKEPHNVEGADKSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEESE 186
           AWLSQQRQVPKEP  VEGA+KSSVSE DE SDDSEDGLPPLEKNLNHLTLQQ+SDEESE
Sbjct: 209 AWLSQQRQVPKEPRIVEGAEKSSVSEDDEGSDDSEDGLPPLEKNLNHLTLQQDSDEESE 267

[Close]

BLAST of IVF0013322 vs. ExPASy TrEMBL
Match: A0A6J1ETU0 (18S rRNA aminocarboxypropyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111435889 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.4e-90
Identity = 168/179 (93.85%), Postives = 173/179 (96.65%), Query Frame = 0


Query: 7   PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 66
           PVGVNCVSKEDHSLLKQ+GLAVVDCSWARLGDVPFVKLRC APRLLPWLVAANPVNYGRP
Sbjct: 89  PVGVNCVSKEDHSLLKQRGLAVVDCSWARLGDVPFVKLRCGAPRLLPWLVAANPVNYGRP 148

Query: 67  CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN 126
           CELSCVEALAAALIICGEGETADLLL KFKWGHAFLSVNRELLKQYSACENSADIISVQN
Sbjct: 149 CELSCVEALAAALIICGEGETADLLLGKFKWGHAFLSVNRELLKQYSACENSADIISVQN 208

Query: 127 AWLSQQRQVPKEPHNVEGADKSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEESE 186
           +WLSQQRQVPKEP  +EGA+KSSVSE DE SDDSEDGLPPLEKNLNHLTLQQ+SDEESE
Sbjct: 209 SWLSQQRQVPKEPRVLEGAEKSSVSEDDEGSDDSEDGLPPLEKNLNHLTLQQDSDEESE 267

[Close]

BLAST of IVF0013322 vs. NCBI nr
Match: XP_008453772.1 (PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 363 bits (933), Expect = 2.28e-125
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 7   PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 66
           PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP
Sbjct: 89  PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 148

Query: 67  CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN 126
           CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN
Sbjct: 149 CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN 208

Query: 127 AWLSQQRQVPKEPHNVEGADKSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEESE 185
           AWLSQQRQVPKEPHNVEGADKSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEESE
Sbjct: 209 AWLSQQRQVPKEPHNVEGADKSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEESE 267

[Close]

BLAST of IVF0013322 vs. NCBI nr
Match: KAE8637569.1 (hypothetical protein CSA_017846 [Cucumis sativus])

HSP 1 Score: 359 bits (922), Expect = 1.13e-124
Identity = 177/179 (98.88%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 7   PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 66
           PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP
Sbjct: 25  PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 84

Query: 67  CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN 126
           CELSCVEALAAALIICGEGETADLLL KFKWGHAFLSVNRELLKQYSACENSADIISVQN
Sbjct: 85  CELSCVEALAAALIICGEGETADLLLGKFKWGHAFLSVNRELLKQYSACENSADIISVQN 144

Query: 127 AWLSQQRQVPKEPHNVEGADKSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEESE 185
           AWLSQQRQVPKEPHNVEGADKSSVSEHDE SDDSEDGLPPLEKNLNHLTLQQESDEESE
Sbjct: 145 AWLSQQRQVPKEPHNVEGADKSSVSEHDEGSDDSEDGLPPLEKNLNHLTLQQESDEESE 203

[Close]

BLAST of IVF0013322 vs. NCBI nr
Match: XP_011653126.1 (ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis sativus] >XP_031745814.1 ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 359 bits (922), Expect = 1.08e-123
Identity = 177/179 (98.88%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 7   PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 66
           PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP
Sbjct: 89  PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 148

Query: 67  CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN 126
           CELSCVEALAAALIICGEGETADLLL KFKWGHAFLSVNRELLKQYSACENSADIISVQN
Sbjct: 149 CELSCVEALAAALIICGEGETADLLLGKFKWGHAFLSVNRELLKQYSACENSADIISVQN 208

Query: 127 AWLSQQRQVPKEPHNVEGADKSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEESE 185
           AWLSQQRQVPKEPHNVEGADKSSVSEHDE SDDSEDGLPPLEKNLNHLTLQQESDEESE
Sbjct: 209 AWLSQQRQVPKEPHNVEGADKSSVSEHDEGSDDSEDGLPPLEKNLNHLTLQQESDEESE 267

[Close]

BLAST of IVF0013322 vs. NCBI nr
Match: XP_031740208.1 (LOW QUALITY PROTEIN: ribosome biogenesis protein TSR3 homolog [Cucumis sativus])

HSP 1 Score: 358 bits (918), Expect = 4.39e-123
Identity = 176/179 (98.32%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 7   PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 66
           PVGVNCVSKEDHSLLK+KGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP
Sbjct: 89  PVGVNCVSKEDHSLLKKKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 148

Query: 67  CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN 126
           CELSCVEALAAALIICGEGETADLLL KFKWGHAFLSVNRELLKQYSACENSADIISVQN
Sbjct: 149 CELSCVEALAAALIICGEGETADLLLGKFKWGHAFLSVNRELLKQYSACENSADIISVQN 208

Query: 127 AWLSQQRQVPKEPHNVEGADKSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEESE 185
           AWLSQQRQVPKEPHNVEGADKSSVSEHDE SDDSEDGLPPLEKNLNHLTLQQESDEESE
Sbjct: 209 AWLSQQRQVPKEPHNVEGADKSSVSEHDEGSDDSEDGLPPLEKNLNHLTLQQESDEESE 267

[Close]

BLAST of IVF0013322 vs. NCBI nr
Match: XP_008453773.1 (PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 355 bits (910), Expect = 6.76e-122
Identity = 177/179 (98.88%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 7   PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 66
           PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP
Sbjct: 89  PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 148

Query: 67  CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN 126
           CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN
Sbjct: 149 CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN 208

Query: 127 AWLSQQRQVPKEPHNVEGADKSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEESE 185
           AWLSQQRQVPKEPHNVE  DKSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEESE
Sbjct: 209 AWLSQQRQVPKEPHNVE--DKSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEESE 265

[Close]

BLAST of IVF0013322 vs. TAIR 10
Match: AT5G10070.1 (RNase L inhibitor protein-related )

HSP 1 Score: 270.0 bits (689), Expect = 1.4e-72
Identity = 126/179 (70.39%), Postives = 151/179 (84.36%), Query Frame = 0


Query: 7   PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 66
           PVG  CVS+ED+ L+K+KGLAVVDCSWARL DVPF KLRC APRLLPWLVAANPVNYGRP
Sbjct: 86  PVGRQCVSREDYDLIKRKGLAVVDCSWARLTDVPFAKLRCTAPRLLPWLVAANPVNYGRP 145

Query: 67  CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN 126
           CELSCVEAL+AALI+CGE ETA+LLL KFKWGHAFLS+N+++LK+YS CENSA+IISVQN
Sbjct: 146 CELSCVEALSAALILCGEKETAELLLGKFKWGHAFLSLNKDILKEYSKCENSAEIISVQN 205

Query: 127 AWLSQQRQVPKEPHNVEGADKSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEESE 186
           +WL+QQ Q+PK+P  +E   K      DE  +D EDGLPPLE+N+NH+ L+   +E+SE
Sbjct: 206 SWLTQQTQIPKQPPALEEHVKKDGESGDESEEDDEDGLPPLERNMNHIKLEDSEEEDSE 264

[Close]

BLAST of IVF0013322 vs. TAIR 10
Match: AT5G10070.2 (RNase L inhibitor protein-related )

HSP 1 Score: 266.2 bits (679), Expect = 2.0e-71
Identity = 126/181 (69.61%), Postives = 151/181 (83.43%), Query Frame = 0


Query: 7   PVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRP 66
           PVG  CVS+ED+ L+K+KGLAVVDCSWARL DVPF KLRC APRLLPWLVAANPVNYGRP
Sbjct: 86  PVGRQCVSREDYDLIKRKGLAVVDCSWARLTDVPFAKLRCTAPRLLPWLVAANPVNYGRP 145

Query: 67  CELSCVEALAAALIICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQN 126
           CELSCVEAL+AALI+CGE ETA+LLL KFKWGHAFLS+N+++LK+YS CENSA+IISVQN
Sbjct: 146 CELSCVEALSAALILCGEKETAELLLGKFKWGHAFLSLNKDILKEYSKCENSAEIISVQN 205

Query: 127 AWLSQQRQVPKEPHNVEGAD--KSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEES 186
           +WL+QQ Q+PK+P  +E     K      DE  +D EDGLPPLE+N+NH+ L+   +E+S
Sbjct: 206 SWLTQQTQIPKQPPALEERKDVKKDGESGDESEEDDEDGLPPLERNMNHIKLEDSEEEDS 265

The following BLAST results are available for this feature:

BLAST of IVF0013322 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5HZH2	1.2e-36	45.25	18S rRNA aminocarboxypropyltransferase OS=Mus musculus OX=10090 GN=Tsr3 PE=1 SV=...	[more]
Q9UJK0	1.1e-32	43.50	18S rRNA aminocarboxypropyltransferase OS=Homo sapiens OX=9606 GN=TSR3 PE=1 SV=1	[more]
Q12094	5.6e-26	40.00	18S rRNA aminocarboxypropyltransferase OS=Saccharomyces cerevisiae (strain ATCC ...	[more]
Q8TXM4	1.6e-25	47.15	16S rRNA aminocarboxypropyltransferase OS=Methanopyrus kandleri (strain AV19 / D...	[more]
Q10409	2.8e-25	37.17	18S rRNA aminocarboxypropyltransferase OS=Schizosaccharomyces pombe (strain 972 ...	[more]

BLAST of IVF0013322 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BX27	8.3e-97	100.00	18S rRNA aminocarboxypropyltransferase OS=Cucumis melo OX=3656 GN=LOC103494403 P...	[more]
A0A0A0KXU5	1.6e-95	98.88	18S rRNA aminocarboxypropyltransferase OS=Cucumis sativus OX=3659 GN=Csa_4G03103...	[more]
A0A1S3BXV8	5.0e-94	98.88	18S rRNA aminocarboxypropyltransferase OS=Cucumis melo OX=3656 GN=LOC103494403 P...	[more]
A0A6J1J6L0	6.8e-91	94.97	18S rRNA aminocarboxypropyltransferase OS=Cucurbita maxima OX=3661 GN=LOC1114830...	[more]
A0A6J1ETU0	3.4e-90	93.85	18S rRNA aminocarboxypropyltransferase OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]

BLAST of IVF0013322 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453772.1	2.28e-125	100.00	PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis melo]	[more]
KAE8637569.1	1.13e-124	98.88	hypothetical protein CSA_017846 [Cucumis sativus]	[more]
XP_011653126.1	1.08e-123	98.88	ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis sativus] >XP_031745...	[more]
XP_031740208.1	4.39e-123	98.32	LOW QUALITY PROTEIN: ribosome biogenesis protein TSR3 homolog [Cucumis sativus]	[more]
XP_008453773.1	6.76e-122	98.88	PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X2 [Cucumis melo]	[more]

BLAST of IVF0013322 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10070.1	1.4e-72	70.39	RNase L inhibitor protein-related	[more]
AT5G10070.2	2.0e-71	69.61	RNase L inhibitor protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007177	16S/18S rRNA aminocarboxypropyltransferase Tsr3, C-terminal	PFAM	PF04034	Ribo_biogen_C	coord: 7..129 e-value: 1.7E-49 score: 166.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..154
IPR022968	16S/18S rRNA aminocarboxypropyltransferase Tsr3	PANTHER	PTHR20426	RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG	coord: 7..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013322.1	IVF0013322.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000455	enzyme-directed rRNA pseudouridine synthesis
biological_process	GO:0030490	maturation of SSU-rRNA
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0106388	18S rRNA aminocarboxypropyltransferase activity
molecular_function	GO:1904047	S-adenosyl-L-methionine binding
molecular_function	GO:0016740	transferase activity