IVF0013270 (gene) Melon (IVF77) v1

Overview
NameIVF0013270
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr12: 14251852 .. 14252229 (+)
RNA-Seq ExpressionIVF0013270
SyntenyIVF0013270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGGTCGAATGTCCCTTTTGGGTACGAGGGATTTGCCGCTGGCAATGAAAATGATAAAGATCCTTACTATGTTTAGTCAAGGACTAAACATGTCGCCTGATGAATTTGTGGCCAGTCGACATGAGCGGTTAGGTGACGGTAGAAATGCTTCAAGTAGGTCAAAGAGGAAGAGGAGAAGTCAGCCTGTAGAGACCACGAACATAATTCAAAATGTCATGGAGTACGCCAATAGCCAGCTCAACTACATTGCAAATTGGCCGATCTTAAGGAATCAAAATGCAAGCGCAACACAGGAGGAGGTCGTTCGACAATTACAGGCCATCCTTAAACTTAGTAGAATTGAGGTGTTGCTGTATGCGTATCTTTATGCATAA

mRNA sequence

ATGTGGGGTCGAATGTCCCTTTTGGGTACGAGGGATTTGCCGCTGGCAATGAAAATGATAAAGATCCTTACTATGTTTAGTCAAGGACTAAACATGTCGCCTGATGAATTTGTGGCCAGTCGACATGAGCGGTTAGGTGACGGTAGAAATGCTTCAAGTAGGTCAAAGAGGAAGAGGAGAAGTCAGCCTGTAGAGACCACGAACATAATTCAAAATGTCATGGAGTACGCCAATAGCCAGCTCAACTACATTGCAAATTGGCCGATCTTAAGGAATCAAAATGCAAGCGCAACACAGGAGGAGGTCGTTCGACAATTACAGGCCATCCTTAAACTTAGTAGAATTGAGGTGTTGCTGTATGCGTATCTTTATGCATAA

Coding sequence (CDS)

ATGTGGGGTCGAATGTCCCTTTTGGGTACGAGGGATTTGCCGCTGGCAATGAAAATGATAAAGATCCTTACTATGTTTAGTCAAGGACTAAACATGTCGCCTGATGAATTTGTGGCCAGTCGACATGAGCGGTTAGGTGACGGTAGAAATGCTTCAAGTAGGTCAAAGAGGAAGAGGAGAAGTCAGCCTGTAGAGACCACGAACATAATTCAAAATGTCATGGAGTACGCCAATAGCCAGCTCAACTACATTGCAAATTGGCCGATCTTAAGGAATCAAAATGCAAGCGCAACACAGGAGGAGGTCGTTCGACAATTACAGGCCATCCTTAAACTTAGTAGAATTGAGGTGTTGCTGTATGCGTATCTTTATGCATAA

Protein sequence

MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIEVLLYAYLYA
Homology
BLAST of IVF0013270 vs. ExPASy TrEMBL
Match: A0A5A7TKY0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00690 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.6e-59
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0

Query: 1   MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRR 60
           MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRR
Sbjct: 1   MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRR 60

Query: 61  SQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIEVLLY 120
           SQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIEVLLY
Sbjct: 61  SQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIEVLLY 120

Query: 121 AYLYA 126
           AYLYA
Sbjct: 121 AYLYA 125

BLAST of IVF0013270 vs. ExPASy TrEMBL
Match: E5GBS5 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 9.1e-23
Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = 0

Query: 28  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANW 87
           +GLNMSPDEF+ SR  R GDGRNASSRSKRKR  + +E  NIIQN MEYAN QLN I +W
Sbjct: 112 KGLNMSPDEFMDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDW 171

Query: 88  PILRNQNASATQEEVVRQLQAILKLS 114
           PILRNQ+AS TQ+EVVRQLQAI +L+
Sbjct: 172 PILRNQDASVTQQEVVRQLQAIHELN 197

BLAST of IVF0013270 vs. ExPASy TrEMBL
Match: A0A5D3BVH6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00320 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-21
Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = 0

Query: 28  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANW 87
           +GLNMSPDEF+ SR  R GDGRNASSR KRKR  + +ET NIIQN MEYAN QLN I +W
Sbjct: 112 KGLNMSPDEFMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDW 171

Query: 88  PILRNQNASATQEEVVRQLQAILKLS 114
            ILRNQ+AS TQ+EVVRQLQAI +L+
Sbjct: 172 LILRNQDASVTQQEVVRQLQAIHELN 197

BLAST of IVF0013270 vs. ExPASy TrEMBL
Match: A0A5A7V442 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005190 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-21
Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = 0

Query: 28  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANW 87
           +GLNMSPDEF+ SR  R GDGRNASSR KRKR  + +ET NIIQN MEYAN QLN I +W
Sbjct: 277 KGLNMSPDEFMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDW 336

Query: 88  PILRNQNASATQEEVVRQLQAILKLS 114
            ILRNQ+AS TQ+EVVRQLQAI +L+
Sbjct: 337 LILRNQDASVTQQEVVRQLQAIHELN 362

BLAST of IVF0013270 vs. ExPASy TrEMBL
Match: A0A5D3BC43 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001510 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.0e-17
Identity = 46/93 (49.46%), Postives = 72/93 (77.42%), Query Frame = 0

Query: 24  TMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNY 83
           +M+SQGLNMSPD+ + +R  R+ + RN SSRSKRKR    +++ NI++  +EY N QLN+
Sbjct: 142 SMYSQGLNMSPDDLMGTRIARVSERRNVSSRSKRKRPGHAIDSGNIVRTAIEYENEQLNH 201

Query: 84  IANWPILRNQNASATQEEVVRQLQAILKLSRIE 117
           IA WP+L+ Q+AS T++E++RQL+AI +L+ ++
Sbjct: 202 IAEWPVLQRQDASQTRQEIIRQLEAIPELTLMD 234

BLAST of IVF0013270 vs. NCBI nr
Match: KAA0042367.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15486.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 233 bits (595), Expect = 4.84e-77
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0

Query: 1   MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRR 60
           MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRR
Sbjct: 1   MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRR 60

Query: 61  SQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIEVLLY 120
           SQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIEVLLY
Sbjct: 61  SQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIEVLLY 120

Query: 121 AYLYA 125
           AYLYA
Sbjct: 121 AYLYA 125

BLAST of IVF0013270 vs. NCBI nr
Match: ADN33917.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 114 bits (286), Expect = 4.12e-29
Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = 0

Query: 28  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANW 87
           +GLNMSPDEF+ SR  R GDGRNASSRSKRKR  + +E  NIIQN MEYAN QLN I +W
Sbjct: 112 KGLNMSPDEFMDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDW 171

Query: 88  PILRNQNASATQEEVVRQLQAILKLS 113
           PILRNQ+AS TQ+EVVRQLQAI +L+
Sbjct: 172 PILRNQDASVTQQEVVRQLQAIHELN 197

BLAST of IVF0013270 vs. NCBI nr
Match: TYK02236.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (276), Expect = 1.32e-27
Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = 0

Query: 28  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANW 87
           +GLNMSPDEF+ SR  R GDGRNASSR KRKR  + +ET NIIQN MEYAN QLN I +W
Sbjct: 112 KGLNMSPDEFMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDW 171

Query: 88  PILRNQNASATQEEVVRQLQAILKLS 113
            ILRNQ+AS TQ+EVVRQLQAI +L+
Sbjct: 172 LILRNQDASVTQQEVVRQLQAIHELN 197

BLAST of IVF0013270 vs. NCBI nr
Match: KAA0060635.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (276), Expect = 3.65e-26
Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = 0

Query: 28  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANW 87
           +GLNMSPDEF+ SR  R GDGRNASSR KRKR  + +ET NIIQN MEYAN QLN I +W
Sbjct: 277 KGLNMSPDEFMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDW 336

Query: 88  PILRNQNASATQEEVVRQLQAILKLS 113
            ILRNQ+AS TQ+EVVRQLQAI +L+
Sbjct: 337 LILRNQDASVTQQEVVRQLQAIHELN 362

BLAST of IVF0013270 vs. NCBI nr
Match: KAA0038998.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 3.34e-22
Identity = 54/73 (73.97%), Postives = 57/73 (78.08%), Query Frame = 0

Query: 20  IKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANS 79
           ++I TMFSQGLN S DEFVASR   LGD RNASS  KRK+    VETTNIIQNVMEYAN 
Sbjct: 98  MEIPTMFSQGLNTSLDEFVASRLGWLGDSRNASSGLKRKKGGHSVETTNIIQNVMEYAND 157

Query: 80  QLNYIANWPILRN 92
           QLN I NWPILRN
Sbjct: 158 QLNCIENWPILRN 170

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TKY04.6e-59100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
E5GBS59.1e-2372.09Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A5D3BVH61.3e-2170.93Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V4421.3e-2170.93Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BC432.0e-1749.46Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0042367.14.84e-77100.00retrotransposon protein [Cucumis melo var. makuwa] >TYK15486.1 retrotransposon p... [more]
ADN33917.14.12e-2972.09hypothetical protein [Cucumis melo subsp. melo][more]
TYK02236.11.32e-2770.93retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0060635.13.65e-2670.93retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0038998.13.34e-2273.97retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0013270.1IVF0013270.1mRNA