IVF0013263 (gene) Melon (IVF77) v1

Overview


Name	IVF0013263
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	60S ribosomal protein L18
Location	chr05: 23013253 .. 23015655 (-)
RNA-Seq Expression	IVF0013263
Synteny	IVF0013263

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAACCCTAAGAACCATTTACTTCACTCTTAGCCGTCGCCGTCGCTCAAGAGAAGGGTTTCTCCACCAAAAGCTCCAATGGTCCGTCTCCTCATCTTTCTCTTCCTATCTTCCCATCCCTTTTCTCTGCTTTCAATGGCTTATATCAATGTCTGAGATGAGTTTTCATTTTGTTACAGGGTATCGATCTGGTAGCCGGAGGCAAGAGCAAGAAGACCAAAAGGACTGCCCCCAAGTCCGATGATATCTACCTCAAGCTCCTCGTTAAGGTTGGTGTTTCTACTCTTCATTGGTTCCGATTTGGTTACGAGCTCTTGCTTTCGTATGGGTTTTTTTTTTTTTGGAACTTCATCCATTTGATTAGAAAGTAAAGGAACGTTTATATGCTGTGATGATATCTGTGTATCCCAGCTCATTATGAGACCTTTCGTAGGTCAAGGAATGAACTATTTCCACATTTGTCTGAGCTCATGTTTAGATTTGAATGTTCTTGTTTAATTTGAACTATGAAGTAAAGTATATAGTTAATTACAGGACGTTAATGAACCTTGAACGAATAGATAATGGAGATTCGAGTCTGATTTTGCAAGCATTGTTTGGAACTCTTATTCATTTGATTAGAAAGTAGAGGAACATTTATATGCTGTGATGATATCTGTGTATCCCAGCTCATTATGAGATCTTTTGTAGGTCGAGGAATGAACTATTTCCACATTTATCTGAGCCCAGGTTTAGATTTAAATGTCGTTGTTCAGTTTGAACTACGAAGTAGTGTATACAGTTTATCATAGGACGTTAATGAACCTTGATTTCTGAAGTTGTAGTTTTTAAACGTTTTCTGTTGTTCTGTATTGATTGGAATGTTTTTGTTCACTGCCGCAATGATGAAATATGTGATACCCAGCTCATTATGAGACTTTCTAAAGGTCAAGGACTGGACTAAATCCACATATTTATCTGAGCTCAAAATATTCTACCCAGAAGTTTGTTTCATTTCCTCTTGAATTTGGAAGTAAAATGAAGATGGAAAATAAGTAATTCCTTGTGCTCCATTTTTCCGTTCAGACTCTGGCTTCTTTTCTCTATGTATTTTTTAAATGATGTTTGGACTTCTAGATATTGAACTAAGACTTTCTTCCATCCCGAAAGAGAGATAGGTTTGTTCCCTATGATGTTTTATGTATTTAACCATGCTAATACTGATCACATAATGATTGATCTTCAAGTTATCTCTGAGGGAATTGGCCTACAGTCTTCAATCAATTATTTCCAGAAGAATTCTCTGCCTTTTTACTTTATCGTTTATTGTAACATTTTTCCCCTAGCTCAATAGTGTGCGTTGGTGGTTGAGTCTACCTTTATTCTGTGTTGGAATCAGCTATGATTTATTCCATGTTATATTTACAACATTTGTCGTGTAATTATGCTTATTTGAATTGCTTAACTAATAGATCTTTGATCTTGTTTATTGAATTCAGCTGTACCGGTTTCTTGTTCGAAGAACTGGAAGCAATTTTAATGCAGTGATCCTCAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCGCCAATTTCACTATCCAGACTTATCAAGTACATGAAGGGAAAGGTGTGTGCTTCTACTATGCATTACATTTTCTTTACATCTTGGTTTCAGCTTTGCAAGTGTAATTTTTTATCGTCTAAATTCTCTTGTGGTTAACATGGTGTAGGAAGCGAAAATTGCTGTCGTTGTTGGAACCGTGACAGATGACATTCGCGTTTACGAAGTCCCAGCATTGAAAGTTACAGCCTTGAGGTTCACTGAGACCGCAAGAGCCAGGATTGAGAAGGCAGGTGGTGAGTGTTTGACATTCGACCAGCTTGCCTTGAGGGCTCCTCTTGGCCAGAATACGGTACGATTACAAGCCTCATCTCTCACACTCATGATGTTTACACAAGGCTATTGAATGTCATATATTCCTATTTTATTTACCAGCTAAAACTTGGTGTTGTTTTGATTTTGCTTTTGAAGGTTCTTCTTCGTGGACCAAAGAACTCTCGTGAGGCCGTGAAGCACTTCGGTCCTGCTCCTGGTGTGCCTCACAGCCACACGAAACCATACGTGAGGTCGAAGGGAAGGAAGTTCGAGAGAGCCAGAGGAAAGAGAAACAGCAGGGGATACCGAGTTTAATTTGTGAGACAAAAATTCACGTTTTGCTAGACTTGAAGAAATATTATTATGTGAGACTCTATCATGTCTTAGTACAAGTTTTTCTTCTTATAAAAACCAAAATCGGATCCGGTGATAGATATTGTTTCAAGACTTTGCAATTTCCCCCCCTCGATTATCTTCATCTGACTGTTTTACTTCTAATCATTTATTAACGTCTCTTTCAGAATTTGTTGAAAAACCTTGGGAGGAG

mRNA sequence

AAAAACCCTAAGAACCATTTACTTCACTCTTAGCCGTCGCCGTCGCTCAAGAGAAGGGTTTCTCCACCAAAAGCTCCAATGGGTATCGATCTGGTAGCCGGAGGCAAGAGCAAGAAGACCAAAAGGACTGCCCCCAAGTCCGATGATATCTACCTCAAGCTCCTCGTTAAGCTGTACCGGTTTCTTGTTCGAAGAACTGGAAGCAATTTTAATGCAGTGATCCTCAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCGCCAATTTCACTATCCAGACTTATCAAGTACATGAAGGGAAAGGAAGCGAAAATTGCTGTCGTTGTTGGAACCGTGACAGATGACATTCGCGTTTACGAAGTCCCAGCATTGAAAGTTACAGCCTTGAGGTTCACTGAGACCGCAAGAGCCAGGATTGAGAAGGCAGGTGGTGAGTGTTTGACATTCGACCAGCTTGCCTTGAGGGCTCCTCTTGGCCAGAATACGGTTCTTCTTCGTGGACCAAAGAACTCTCGTGAGGCCGTGAAGCACTTCGGTCCTGCTCCTGGTGTGCCTCACAGCCACACGAAACCATACGTGAGGTCGAAGGGAAGGAAGTTCGAGAGAGCCAGAGGAAAGAGAAACAGCAGGGGATACCGAGTTTAATTTGTGAGACAAAAATTCACGTTTTGCTAGACTTGAAGAAATATTATTATGTGAGACTCTATCATGTCTTAGTACAAGTTTTTCTTCTTATAAAAACCAAAATCGGATCCGGTGATAGATATTGTTTCAAGACTTTGCAATTTCCCCCCCTCGATTATCTTCATCTGACTGTTTTACTTCTAATCATTTATTAACGTCTCTTTCAGAATTTGTTGAAAAACCTTGGGAGGAG

Coding sequence (CDS)

ATGGGTATCGATCTGGTAGCCGGAGGCAAGAGCAAGAAGACCAAAAGGACTGCCCCCAAGTCCGATGATATCTACCTCAAGCTCCTCGTTAAGCTGTACCGGTTTCTTGTTCGAAGAACTGGAAGCAATTTTAATGCAGTGATCCTCAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCGCCAATTTCACTATCCAGACTTATCAAGTACATGAAGGGAAAGGAAGCGAAAATTGCTGTCGTTGTTGGAACCGTGACAGATGACATTCGCGTTTACGAAGTCCCAGCATTGAAAGTTACAGCCTTGAGGTTCACTGAGACCGCAAGAGCCAGGATTGAGAAGGCAGGTGGTGAGTGTTTGACATTCGACCAGCTTGCCTTGAGGGCTCCTCTTGGCCAGAATACGGTTCTTCTTCGTGGACCAAAGAACTCTCGTGAGGCCGTGAAGCACTTCGGTCCTGCTCCTGGTGTGCCTCACAGCCACACGAAACCATACGTGAGGTCGAAGGGAAGGAAGTTCGAGAGAGCCAGAGGAAAGAGAAACAGCAGGGGATACCGAGTTTAA

Protein sequence

MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV

Homology

[Close]

BLAST of IVF0013263 vs. ExPASy Swiss-Prot
Match: Q940B0 (60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 1.8e-88
Identity = 162/187 (86.63%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ SNFNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL+++M GK+ KIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of IVF0013263 vs. ExPASy Swiss-Prot
Match: P42791 (60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2)

HSP 1 Score: 325.5 bits (833), Expect = 4.0e-88
Identity = 161/187 (86.10%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL+++M GKE KIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVR+KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of IVF0013263 vs. ExPASy Swiss-Prot
Match: O65729 (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 2.7e-84
Identity = 159/184 (86.41%), Postives = 174/184 (94.57%), Query Frame = 0


Query: 4   DLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPIS 63
           DL AGGK+KKTKRT+PKS+DIYLKLLVKLYRFLVRRT SNFNAVILKRLFMSKVN+PP+S
Sbjct: 1   DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLS 60

Query: 64  LSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFD 123
           LSRLIKYM+GKE KI VVVG VTDDIRVY+VP +KVTAL+FTETARARI+KAGGECLTFD
Sbjct: 61  LSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFD 120

Query: 124 QLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSR 183
           QLALR PL  +TVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVRSKGRKFE+ARG+R SR
Sbjct: 121 QLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSR 180

Query: 184 GYRV 188
           G+RV
Sbjct: 181 GFRV 183

[Close]

BLAST of IVF0013263 vs. ExPASy Swiss-Prot
Match: O22254 (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A PE=3 SV=3)

HSP 1 Score: 294.3 bits (752), Expect = 9.9e-79
Identity = 149/188 (79.26%), Postives = 167/188 (88.83%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRT PKSDD+YLKLLVK  R+LVRRT S FNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL++YM GK+ KIAV+VGTVTDD+R+ +VPAL VTALRFTE+ARARI KAGGECL
Sbjct: 61  PLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECL 120

Query: 121 TFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGK 180
           TFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K E ARG+
Sbjct: 121 TFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGR 180

Query: 181 RNSRGYRV 188
           R SRG++V
Sbjct: 181 RRSRGFKV 188

[Close]

BLAST of IVF0013263 vs. ExPASy Swiss-Prot
Match: Q4GXG7 (60S ribosomal protein L18 OS=Timarcha balearica OX=79517 GN=RpL18 PE=2 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.4e-64
Identity = 125/188 (66.49%), Postives = 154/188 (81.91%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGID +     +K +RT PKS D+YL+LLVKLYR+L RRTG+ FN +ILKRLFMSK+ +P
Sbjct: 1   MGID-INHKYDRKVRRTEPKSQDVYLRLLVKLYRYLARRTGAKFNKIILKRLFMSKIYRP 60

Query: 61  PISLSRLIKYMK--GKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 120
           PISLS+++++MK  G+E   AV+VGTVTDD R++E+P L + ALR T+TARA I KAGGE
Sbjct: 61  PISLSKVVRFMKKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGE 120

Query: 121 CLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG 180
            +TFDQLALR+P G  TVLL+G +N+REAVKHFGPAPGVPHSH KP VRSKGRKFERARG
Sbjct: 121 VITFDQLALRSPTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRSKGRKFERARG 180

Query: 181 KRNSRGYR 187
           +R S GY+
Sbjct: 181 RRRSCGYK 187

[Close]

BLAST of IVF0013263 vs. ExPASy TrEMBL
Match: A0A5A7U3L4 (60S ribosomal protein L18-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001430 PE=3 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 8.3e-97
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 188
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of IVF0013263 vs. ExPASy TrEMBL
Match: A0A1S3BYV3 (60S ribosomal protein L18-3 OS=Cucumis melo OX=3656 GN=LOC103494561 PE=3 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 8.3e-97
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 188
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of IVF0013263 vs. ExPASy TrEMBL
Match: A0A6J1HQ85 (60S ribosomal protein L18-3 OS=Cucurbita maxima OX=3661 GN=LOC111465687 PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 1.6e-95
Identity = 184/187 (98.40%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIK+MKGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 188
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of IVF0013263 vs. ExPASy TrEMBL
Match: A0A0A0LFX7 (Ribosomal_L18e/L15P domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G032220 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.7e-95
Identity = 183/187 (97.86%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKYM GKE +IAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMNGKEGRIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 188
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of IVF0013263 vs. ExPASy TrEMBL
Match: A0A6J1KGZ8 (60S ribosomal protein L18-2 OS=Cucurbita maxima OX=3661 GN=LOC111493781 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.5e-95
Identity = 183/187 (97.86%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFN+VILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNSVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIK+MKGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 188
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of IVF0013263 vs. NCBI nr
Match: XP_008454015.1 (PREDICTED: 60S ribosomal protein L18-3 [Cucumis melo] >KAA0048039.1 60S ribosomal protein L18-3 [Cucumis melo var. makuwa] >TYJ96497.1 60S ribosomal protein L18-3 [Cucumis melo var. makuwa])

HSP 1 Score: 360 bits (925), Expect = 2.43e-125
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 187
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of IVF0013263 vs. NCBI nr
Match: KAG6586240.1 (60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 357 bits (915), Expect = 8.15e-124
Identity = 185/187 (98.93%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIK+MKGKE KIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 187
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of IVF0013263 vs. NCBI nr
Match: KAG7021075.1 (60S ribosomal protein L18-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 356 bits (914), Expect = 1.16e-123
Identity = 184/187 (98.40%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIK+MKGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 187
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of IVF0013263 vs. NCBI nr
Match: XP_022965965.1 (60S ribosomal protein L18-3 [Cucurbita maxima] >KAG6599207.1 60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 356 bits (914), Expect = 1.16e-123
Identity = 184/187 (98.40%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIK+MKGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 187
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of IVF0013263 vs. NCBI nr
Match: XP_038891230.1 (60S ribosomal protein L18-3 [Benincasa hispida])

HSP 1 Score: 356 bits (914), Expect = 1.16e-123
Identity = 183/187 (97.86%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKYMKGKE K+AV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMKGKEEKVAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 187
           NSRG+RV
Sbjct: 181 NSRGFRV 187

[Close]

BLAST of IVF0013263 vs. TAIR 10
Match: AT5G27850.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 326.6 bits (836), Expect = 1.3e-89
Identity = 162/187 (86.63%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ SNFNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL+++M GK+ KIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of IVF0013263 vs. TAIR 10
Match: AT3G05590.1 (ribosomal protein L18 )

HSP 1 Score: 325.5 bits (833), Expect = 2.8e-89
Identity = 161/187 (86.10%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL+++M GKE KIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVR+KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of IVF0013263 vs. TAIR 10
Match: AT2G47570.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 208.8 bits (530), Expect = 3.9e-54
Identity = 104/135 (77.04%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 54  MSKVNKPPISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIE 113
           MSKVNK P+SLSRL++YM GK+ KIAV+VGTVTDD+R+ +VPAL VTALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 114 KAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRK 173
           KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 174 FERARGKRNSRGYRV 188
            E ARG+R SRG++V
Sbjct: 121 IEIARGRRRSRGFKV 135

[Close]

BLAST of IVF0013263 vs. TAIR 10
Match: AT2G47570.2 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 208.8 bits (530), Expect = 3.9e-54
Identity = 104/135 (77.04%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 54  MSKVNKPPISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIE 113
           MSKVNK P+SLSRL++YM GK+ KIAV+VGTVTDD+R+ +VPAL VTALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 114 KAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRK 173
           KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 174 FERARGKRNSRGYRV 188
            E ARG+R SRG++V
Sbjct: 121 IEIARGRRRSRGFKV 135

The following BLAST results are available for this feature:

BLAST of IVF0013263 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940B0	1.8e-88	86.63	60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1	[more]
P42791	4.0e-88	86.10	60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2	[more]
O65729	2.7e-84	86.41	60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV...	[more]
O22254	9.9e-79	79.26	Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A P...	[more]
Q4GXG7	1.4e-64	66.49	60S ribosomal protein L18 OS=Timarcha balearica OX=79517 GN=RpL18 PE=2 SV=1	[more]

BLAST of IVF0013263 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3L4	8.3e-97	100.00	60S ribosomal protein L18-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BYV3	8.3e-97	100.00	60S ribosomal protein L18-3 OS=Cucumis melo OX=3656 GN=LOC103494561 PE=3 SV=1	[more]
A0A6J1HQ85	1.6e-95	98.40	60S ribosomal protein L18-3 OS=Cucurbita maxima OX=3661 GN=LOC111465687 PE=3 SV=...	[more]
A0A0A0LFX7	2.7e-95	97.86	Ribosomal_L18e/L15P domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_...	[more]
A0A6J1KGZ8	3.5e-95	97.86	60S ribosomal protein L18-2 OS=Cucurbita maxima OX=3661 GN=LOC111493781 PE=3 SV=...	[more]

BLAST of IVF0013263 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454015.1	2.43e-125	100.00	PREDICTED: 60S ribosomal protein L18-3 [Cucumis melo] >KAA0048039.1 60S ribosoma...	[more]
KAG6586240.1	8.15e-124	98.93	60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7021075.1	1.16e-123	98.40	60S ribosomal protein L18-3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022965965.1	1.16e-123	98.40	60S ribosomal protein L18-3 [Cucurbita maxima] >KAG6599207.1 60S ribosomal prote...	[more]
XP_038891230.1	1.16e-123	97.86	60S ribosomal protein L18-3 [Benincasa hispida]	[more]

BLAST of IVF0013263 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27850.1	1.3e-89	86.63	Ribosomal protein L18e/L15 superfamily protein	[more]
AT3G05590.1	2.8e-89	86.10	ribosomal protein L18	[more]
AT2G47570.1	3.9e-54	77.04	Ribosomal protein L18e/L15 superfamily protein	[more]
AT2G47570.2	3.9e-54	77.04	Ribosomal protein L18e/L15 superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF17135	Ribosomal_L18	coord: 2..187 e-value: 2.6E-95 score: 317.2
None	No IPR available	GENE3D	3.100.10.10		coord: 1..187 e-value: 2.5E-101 score: 338.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..187
None	No IPR available	PANTHER	PTHR10934:SF19	60S RIBOSOMAL PROTEIN L18-1-RELATED	coord: 1..186
IPR000039	Ribosomal protein L18e	PANTHER	PTHR10934	60S RIBOSOMAL PROTEIN L18	coord: 1..186
IPR036227	Ribosomal L18e/L15P superfamily	SUPERFAMILY	52080	Ribosomal proteins L15p and L18e	coord: 20..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013263.2	IVF0013263.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome