IVF0013250 (gene) Melon (IVF77) v1

Overview
NameIVF0013250
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr04: 11230432 .. 11230767 (+)
RNA-Seq ExpressionIVF0013250
SyntenyIVF0013250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTGCCCTTACGTCGATGCTGGTATGGCGACAGCCGACGCCGCACCACCGAGGCAGAGACGGCCGATGGCTGGCCGTGCACGCGGAACCCAGAAGAAGAACGGTCGGGGACGGCTGTCGCTGTGGCTTCCCGTCGGTGAGGTGCGGATGGAGAAAAACGGGCGGTCGTCGAAGGCGTACGGATGGCGTCTGTGTTCGTCGGGTGAAGAAGCCGAAGAGAAGAAGAAGAAGAAGAGATGGCGGCGGCGCTTCGTGAAGGCGGTGGAGAAGGAAGCCTCGGGGTCGTGCGGCGGCGCAAGGAAGAAAGCGAAAATGGATGGGCTTGCGCGGTAG

mRNA sequence

ATGGCTTGCCCTTACGTCGATGCTGGTATGGCGACAGCCGACGCCGCACCACCGAGGCAGAGACGGCCGATGGCTGGCCGTGCACGCGGAACCCAGAAGAAGAACGGTCGGGGACGGCTGTCGCTGTGGCTTCCCGTCGGTGAGGTGCGGATGGAGAAAAACGGGCGGTCGTCGAAGGCGTACGGATGGCGTCTGTGTTCGTCGGGTGAAGAAGCCGAAGAGAAGAAGAAGAAGAAGAGATGGCGGCGGCGCTTCGTGAAGGCGGTGGAGAAGGAAGCCTCGGGGTCGTGCGGCGGCGCAAGGAAGAAAGCGAAAATGGATGGGCTTGCGCGGTAG

Coding sequence (CDS)

ATGGCTTGCCCTTACGTCGATGCTGGTATGGCGACAGCCGACGCCGCACCACCGAGGCAGAGACGGCCGATGGCTGGCCGTGCACGCGGAACCCAGAAGAAGAACGGTCGGGGACGGCTGTCGCTGTGGCTTCCCGTCGGTGAGGTGCGGATGGAGAAAAACGGGCGGTCGTCGAAGGCGTACGGATGGCGTCTGTGTTCGTCGGGTGAAGAAGCCGAAGAGAAGAAGAAGAAGAAGAGATGGCGGCGGCGCTTCGTGAAGGCGGTGGAGAAGGAAGCCTCGGGGTCGTGCGGCGGCGCAAGGAAGAAAGCGAAAATGGATGGGCTTGCGCGGTAG

Protein sequence

MACPYVDAGMATADAAPPRQRRPMAGRARGTQKKNGRGRLSLWLPVGEVRMEKNGRSSKAYGWRLCSSGEEAEEKKKKKRWRRRFVKAVEKEASGSCGGARKKAKMDGLAR
Homology
BLAST of IVF0013250 vs. ExPASy TrEMBL
Match: A0A5A7VN13 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001400 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.1e-09
Identity = 37/44 (84.09%), Postives = 38/44 (86.36%), Query Frame = 0

Query: 1   MACP--YVDAGMATADAAPPRQRRPMAGRARGTQKKNGRGRLSL 43
           MACP  YVDA   TADA PPRQ+RPMAGRARGTQKKNGRGRLSL
Sbjct: 90  MACPVTYVDASNTTADAVPPRQKRPMAGRARGTQKKNGRGRLSL 133

BLAST of IVF0013250 vs. ExPASy TrEMBL
Match: A0A5A7VD11 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002580 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0

Query: 1  MACPYVDAGMATADAAPPRQRRPMAGRARGTQKK 35
          MACPYVDAGMATADAAPPRQRRPMAGRARGT+KK
Sbjct: 15 MACPYVDAGMATADAAPPRQRRPMAGRARGTRKK 48

BLAST of IVF0013250 vs. ExPASy TrEMBL
Match: A0A5D3D2P4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002650 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.9e-04
Identity = 28/38 (73.68%), Postives = 29/38 (76.32%), Query Frame = 0

Query: 5  YVDAGMATADAAPPRQRRPMAGRARGTQKKNGRGRLSL 43
          YVDA   T D   PRQRRPMAGRARGTQKK+GR RL L
Sbjct: 13 YVDARYTTIDTVQPRQRRPMAGRARGTQKKDGRRRLPL 50

BLAST of IVF0013250 vs. NCBI nr
Match: KAA0067956.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 8.48e-12
Identity = 37/44 (84.09%), Postives = 38/44 (86.36%), Query Frame = 0

Query: 1   MACP--YVDAGMATADAAPPRQRRPMAGRARGTQKKNGRGRLSL 42
           MACP  YVDA   TADA PPRQ+RPMAGRARGTQKKNGRGRLSL
Sbjct: 90  MACPVTYVDASNTTADAVPPRQKRPMAGRARGTQKKNGRGRLSL 133

BLAST of IVF0013250 vs. NCBI nr
Match: KAA0066232.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 3.70e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0

Query: 1  MACPYVDAGMATADAAPPRQRRPMAGRARGTQKK 34
          MACPYVDAGMATADAAPPRQRRPMAGRARGT+KK
Sbjct: 15 MACPYVDAGMATADAAPPRQRRPMAGRARGTRKK 48

BLAST of IVF0013250 vs. NCBI nr
Match: TYK17960.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 51.6 bits (122), Expect = 5.25e-05
Identity = 28/38 (73.68%), Postives = 29/38 (76.32%), Query Frame = 0

Query: 5  YVDAGMATADAAPPRQRRPMAGRARGTQKKNGRGRLSL 42
          YVDA   T D   PRQRRPMAGRARGTQKK+GR RL L
Sbjct: 13 YVDARYTTIDTVQPRQRRPMAGRARGTQKKDGRRRLPL 50

BLAST of IVF0013250 vs. NCBI nr
Match: KAA0031930.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 48.9 bits (115), Expect = 4.24e-04
Identity = 30/42 (71.43%), Postives = 31/42 (73.81%), Query Frame = 0

Query: 3   CP--YVDAGMATADAAPPRQRRPMAGRARGTQKKNGRGRLSL 42
           CP  YVDA   T DAA  RQRRPMA RARGTQKK+GR RL L
Sbjct: 144 CPVTYVDARCTTDDAAQLRQRRPMASRARGTQKKDGRRRLPL 185

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VN135.1e-0984.09NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7VD111.5e-0897.06Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002580 PE... [more]
A0A5D3D2P44.9e-0473.68Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
KAA0067956.18.48e-1284.09NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0066232.13.70e-1197.06transposase [Cucumis melo var. makuwa][more]
TYK17960.15.25e-0573.68Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0031930.14.24e-0471.43NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0013250.1IVF0013250.1mRNA