IVF0013248 (gene) Melon (IVF77) v1

Overview


Name	IVF0013248
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Beta-galactosidase
Location	chr11: 21537166 .. 21537663 (+)
RNA-Seq Expression	IVF0013248
Synteny	IVF0013248

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTTTGTTTTGAAGTCCGCCTGGAAGAGGATCGCACTAATGCCATGGGTGTATTGACTACCCCTACTATTGACTCCGCTGCCTTTAGCGCTCGGTCCTCAAATCATGACAGTGACAAAAATAATGGGAAGTCAATTCCTGTGTGTGAGCACTGCAAGAAACAATGGCACACCAAGGATCAGTGTTGGAAACTTCACAATTGTCCCCCAGGAGGTAAGAAACGGTCCTCCAACGAGAAACAGAACTCAGGACGTGCCTACATTAGTGAGACTACCCTTGCTAGCACTTCTCAATCAATTAATCCTACTGCAAGCCAGATCAAGACTCCGACTCTGGGTGTCATTGCTCAGTCAGGTATGCCTCAGTCCCTTGGGTTTATTAGCGTTGATGGAAAGAATCCCTGGATCTTAGACTCGGGGGCTACAGATCACTTGACAGGTTCTTTGGAACACTTTATATCATATGCCCCGTGTGCCAGTAATGAAAAAATCTGA

mRNA sequence

ATGGAAGTTTGTTTTGAAGTCCGCCTGGAAGAGGATCGCACTAATGCCATGGGTGTATTGACTACCCCTACTATTGACTCCGCTGCCTTTAGCGCTCGGTCCTCAAATCATGACAGTGACAAAAATAATGGGAAGTCAATTCCTGTGTGTGAGCACTGCAAGAAACAATGGCACACCAAGGATCAGTGTTGGAAACTTCACAATTGTCCCCCAGGAGGTAAGAAACGGTCCTCCAACGAGAAACAGAACTCAGGACGTGCCTACATTAGTGAGACTACCCTTGCTAGCACTTCTCAATCAATTAATCCTACTGCAAGCCAGATCAAGACTCCGACTCTGGGTGTCATTGCTCAGTCAGGTATGCCTCAGTCCCTTGGGTTTATTAGCGTTGATGGAAAGAATCCCTGGATCTTAGACTCGGGGGCTACAGATCACTTGACAGGTTCTTTGGAACACTTTATATCATATGCCCCGTGTGCCAGTAATGAAAAAATCTGA

Coding sequence (CDS)

ATGGAAGTTTGTTTTGAAGTCCGCCTGGAAGAGGATCGCACTAATGCCATGGGTGTATTGACTACCCCTACTATTGACTCCGCTGCCTTTAGCGCTCGGTCCTCAAATCATGACAGTGACAAAAATAATGGGAAGTCAATTCCTGTGTGTGAGCACTGCAAGAAACAATGGCACACCAAGGATCAGTGTTGGAAACTTCACAATTGTCCCCCAGGAGGTAAGAAACGGTCCTCCAACGAGAAACAGAACTCAGGACGTGCCTACATTAGTGAGACTACCCTTGCTAGCACTTCTCAATCAATTAATCCTACTGCAAGCCAGATCAAGACTCCGACTCTGGGTGTCATTGCTCAGTCAGGTATGCCTCAGTCCCTTGGGTTTATTAGCGTTGATGGAAAGAATCCCTGGATCTTAGACTCGGGGGCTACAGATCACTTGACAGGTTCTTTGGAACACTTTATATCATATGCCCCGTGTGCCAGTAATGAAAAAATCTGA

Protein sequence

MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKDQCWKLHNCPPGGKKRSSNEKQNSGRAYISETTLASTSQSINPTASQIKTPTLGVIAQSGMPQSLGFISVDGKNPWILDSGATDHLTGSLEHFISYAPCASNEKI

Homology

[Close]

BLAST of IVF0013248 vs. ExPASy TrEMBL
Match: A0A5D3BJK7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G001020 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.0e-82
Identity = 154/165 (93.33%), Postives = 155/165 (93.94%), Query Frame = 0


Query: 1   MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK 60
           MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK
Sbjct: 348 MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK 407

Query: 61  DQCWKLHNCPPGGKKRSSNEKQNSGRAYISETTLASTSQSINPTASQIKTPTLGVIAQSG 120
           DQCWKLH  PPGGKKRSSNEKQNSGRAYISETT ASTSQS +PT SQ KTPTLG IAQSG
Sbjct: 408 DQCWKLHGRPPGGKKRSSNEKQNSGRAYISETTPASTSQSTDPTVSQTKTPTLGAIAQSG 467

Query: 121 MPQSLGFISVDGKNPWILDSGATDHLTGSLEHFISYAPCASNEKI 166
           MPQSLG ISVDGKNPWILDSGATDHLTGS EHFISYAPCA NEKI
Sbjct: 468 MPQSLGLISVDGKNPWILDSGATDHLTGSSEHFISYAPCAGNEKI 512

[Close]

BLAST of IVF0013248 vs. ExPASy TrEMBL
Match: A0A5D3C4T4 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00040 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.0e-82
Identity = 154/165 (93.33%), Postives = 155/165 (93.94%), Query Frame = 0


Query: 1   MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK 60
           MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK
Sbjct: 348 MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK 407

Query: 61  DQCWKLHNCPPGGKKRSSNEKQNSGRAYISETTLASTSQSINPTASQIKTPTLGVIAQSG 120
           DQCWKLH  PPGGKKRSSNEKQNSGRAYISETT ASTSQS +PT SQ KTPTLG IAQSG
Sbjct: 408 DQCWKLHGRPPGGKKRSSNEKQNSGRAYISETTPASTSQSTDPTVSQTKTPTLGAIAQSG 467

Query: 121 MPQSLGFISVDGKNPWILDSGATDHLTGSLEHFISYAPCASNEKI 166
           MPQSLG ISVDGKNPWILDSGATDHLTGS EHFISYAPCA NEKI
Sbjct: 468 MPQSLGLISVDGKNPWILDSGATDHLTGSSEHFISYAPCAGNEKI 512

[Close]

BLAST of IVF0013248 vs. ExPASy TrEMBL
Match: A0A5A7VLQ7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00690 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.0e-82
Identity = 154/165 (93.33%), Postives = 155/165 (93.94%), Query Frame = 0


Query: 1   MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK 60
           MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK
Sbjct: 348 MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK 407

Query: 61  DQCWKLHNCPPGGKKRSSNEKQNSGRAYISETTLASTSQSINPTASQIKTPTLGVIAQSG 120
           DQCWKLH  PPGGKKRSSNEKQNSGRAYISETT ASTSQS +PT SQ KTPTLG IAQSG
Sbjct: 408 DQCWKLHGRPPGGKKRSSNEKQNSGRAYISETTPASTSQSTDPTVSQTKTPTLGAIAQSG 467

Query: 121 MPQSLGFISVDGKNPWILDSGATDHLTGSLEHFISYAPCASNEKI 166
           MPQSLG ISVDGKNPWILDSGATDHLTGS EHFISYAPCA NEKI
Sbjct: 468 MPQSLGLISVDGKNPWILDSGATDHLTGSSEHFISYAPCAGNEKI 512

[Close]

BLAST of IVF0013248 vs. ExPASy TrEMBL
Match: A0A5A7SM64 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00220 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.0e-82
Identity = 154/165 (93.33%), Postives = 155/165 (93.94%), Query Frame = 0


Query: 1   MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK 60
           MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK
Sbjct: 348 MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK 407

Query: 61  DQCWKLHNCPPGGKKRSSNEKQNSGRAYISETTLASTSQSINPTASQIKTPTLGVIAQSG 120
           DQCWKLH  PPGGKKRSSNEKQNSGRAYISETT ASTSQS +PT SQ KTPTLG IAQSG
Sbjct: 408 DQCWKLHGRPPGGKKRSSNEKQNSGRAYISETTPASTSQSTDPTVSQTKTPTLGAIAQSG 467

Query: 121 MPQSLGFISVDGKNPWILDSGATDHLTGSLEHFISYAPCASNEKI 166
           MPQSLG ISVDGKNPWILDSGATDHLTGS EHFISYAPCA NEKI
Sbjct: 468 MPQSLGLISVDGKNPWILDSGATDHLTGSSEHFISYAPCAGNEKI 512

[Close]

BLAST of IVF0013248 vs. ExPASy TrEMBL
Match: A0A5A7V0Y9 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00520 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.0e-82
Identity = 154/165 (93.33%), Postives = 155/165 (93.94%), Query Frame = 0


Query: 1   MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK 60
           MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK
Sbjct: 623 MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK 682

Query: 61  DQCWKLHNCPPGGKKRSSNEKQNSGRAYISETTLASTSQSINPTASQIKTPTLGVIAQSG 120
           DQCWKLH  PPGGKKRSSNEKQNSGRAYISETT ASTSQS +PT SQ KTPTLG IAQSG
Sbjct: 683 DQCWKLHGRPPGGKKRSSNEKQNSGRAYISETTPASTSQSTDPTVSQTKTPTLGAIAQSG 742

Query: 121 MPQSLGFISVDGKNPWILDSGATDHLTGSLEHFISYAPCASNEKI 166
           MPQSLG ISVDGKNPWILDSGATDHLTGS EHFISYAPCA NEKI
Sbjct: 743 MPQSLGLISVDGKNPWILDSGATDHLTGSSEHFISYAPCAGNEKI 787

[Close]

BLAST of IVF0013248 vs. NCBI nr
Match: KAA0052168.1 (Beta-galactosidase [Cucumis melo var. makuwa] >TYK05135.1 Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 300 bits (769), Expect = 1.64e-101
Identity = 147/162 (90.74%), Postives = 151/162 (93.21%), Query Frame = 0


Query: 1   MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK 60
           MEVCFEVR EEDRTNAMGVLT PT+DS AFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK
Sbjct: 55  MEVCFEVRQEEDRTNAMGVLTIPTVDSTAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK 114

Query: 61  DQCWKLHNCPPGGKKRSSNEKQNSGRAYISETTLASTSQSINPTASQIKTPTLGVIAQSG 120
           DQCWKLH+ PPGGKKRSSNEKQNSGRAYISETT ASTSQS +PTA+Q KTPTLG IAQSG
Sbjct: 115 DQCWKLHDRPPGGKKRSSNEKQNSGRAYISETTPASTSQSTDPTANQTKTPTLGAIAQSG 174

Query: 121 MPQSLGFISVDGKNPWILDSGATDHLTGSLEHFISYAPCASN 162
           MPQSLG ISVDGKNPWILDSGATDHLT SLEHFISYAPCA N
Sbjct: 175 MPQSLGLISVDGKNPWILDSGATDHLTDSLEHFISYAPCADN 216

[Close]

BLAST of IVF0013248 vs. NCBI nr
Match: KAA0054530.1 (Beta-galactosidase [Cucumis melo var. makuwa] >TYJ98266.1 Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 300 bits (768), Expect = 4.09e-98
Identity = 147/150 (98.00%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 1   MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK 60
           MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK
Sbjct: 210 MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK 269

Query: 61  DQCWKLHNCPPGGKKRSSNEKQNSGRAYISETTLASTSQSINPTASQIKTPTLGVIAQSG 120
           DQCWKLHNCPPGGKKRSSNEKQNSGRAYISETTLASTSQSINPTASQIKTPTLGVIAQSG
Sbjct: 270 DQCWKLHNCPPGGKKRSSNEKQNSGRAYISETTLASTSQSINPTASQIKTPTLGVIAQSG 329

Query: 121 MPQSLGFISVDGKNPWILDSGATDHLTGSL 150
           MPQSLGFISVDGKNPWILDSGATDHLT  +
Sbjct: 330 MPQSLGFISVDGKNPWILDSGATDHLTAPI 359

[Close]

BLAST of IVF0013248 vs. NCBI nr
Match: KAA0049856.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 299 bits (766), Expect = 2.49e-97
Identity = 149/165 (90.30%), Postives = 151/165 (91.52%), Query Frame = 0


Query: 1   MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK 60
           MEVCFEVRLEEDRTNAM VLTT TIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK
Sbjct: 55  MEVCFEVRLEEDRTNAMSVLTTHTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK 114

Query: 61  DQCWKLHNCPPGGKKRSSNEKQNSGRAYISETTLASTSQSINPTASQIKTPTLGVIAQSG 120
           DQCWKLH  PPGGKKR SNEKQNSGRAYISETT ASTSQS +PTASQ KTPTLG IAQSG
Sbjct: 115 DQCWKLHGRPPGGKKRFSNEKQNSGRAYISETTPASTSQSTDPTASQTKTPTLGAIAQSG 174

Query: 121 MPQSLGFISVDGKNPWILDSGATDHLTGSLEHFISYAPCASNEKI 165
           MPQSLG IS+D KNPWILDSGATDHLTGS EHFISYA CA NEKI
Sbjct: 175 MPQSLGLISIDRKNPWILDSGATDHLTGSSEHFISYASCAGNEKI 219

[Close]

BLAST of IVF0013248 vs. NCBI nr
Match: KAA0057585.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 310 bits (793), Expect = 2.70e-96
Identity = 151/165 (91.52%), Postives = 155/165 (93.94%), Query Frame = 0


Query: 1   MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK 60
           MEVCFEVRLEEDRTNA+GVLTTPTIDSAAFSARSSNHDSDKNNGKSIP+CEHCKKQWHTK
Sbjct: 55  MEVCFEVRLEEDRTNAIGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPICEHCKKQWHTK 114

Query: 61  DQCWKLHNCPPGGKKRSSNEKQNSGRAYISETTLASTSQSINPTASQIKTPTLGVIAQSG 120
           DQCWKLH  PPGGKKRSSNEKQNSGRAYISETT ASTSQS +PT SQIKTPTLG IAQSG
Sbjct: 115 DQCWKLHGRPPGGKKRSSNEKQNSGRAYISETTPASTSQSTDPTVSQIKTPTLGAIAQSG 174

Query: 121 MPQSLGFISVDGKNPWILDSGATDHLTGSLEHFISYAPCASNEKI 165
           MPQS G ISVDGKNPWILDSGATDHLTGS +HFISYAPCA NEKI
Sbjct: 175 MPQSFGLISVDGKNPWILDSGATDHLTGSSDHFISYAPCAGNEKI 219

[Close]

BLAST of IVF0013248 vs. NCBI nr
Match: KAA0036968.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 306 bits (785), Expect = 4.56e-96
Identity = 153/165 (92.73%), Postives = 154/165 (93.33%), Query Frame = 0


Query: 1   MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTK 60
           MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSAR SNHDSDKNNGKSIPVCEHCKKQWHTK
Sbjct: 39  MEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARPSNHDSDKNNGKSIPVCEHCKKQWHTK 98

Query: 61  DQCWKLHNCPPGGKKRSSNEKQNSGRAYISETTLASTSQSINPTASQIKTPTLGVIAQSG 120
           DQCWKLH  PPGGKKRSSNEKQNSGRAYISETT ASTSQSI+PTASQ KTPTLG IAQSG
Sbjct: 99  DQCWKLHGRPPGGKKRSSNEKQNSGRAYISETTPASTSQSIDPTASQTKTPTLGAIAQSG 158

Query: 121 MPQSLGFISVDGKNPWILDSGATDHLTGSLEHFISYAPCASNEKI 165
           MPQSLG ISVDGKN WILDSGAT HLTGS EHFISYAPCA NEKI
Sbjct: 159 MPQSLGLISVDGKNLWILDSGATYHLTGSSEHFISYAPCAGNEKI 203

The following BLAST results are available for this feature:

BLAST of IVF0013248 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013248 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJK7	3.0e-82	93.33	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G0...	[more]
A0A5D3C4T4	3.0e-82	93.33	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00...	[more]
A0A5A7VLQ7	3.0e-82	93.33	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G0...	[more]
A0A5A7SM64	3.0e-82	93.33	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G0...	[more]
A0A5A7V0Y9	3.0e-82	93.33	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00...	[more]

BLAST of IVF0013248 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052168.1	1.64e-101	90.74	Beta-galactosidase [Cucumis melo var. makuwa] >TYK05135.1 Beta-galactosidase [Cu...	[more]
KAA0054530.1	4.09e-98	98.00	Beta-galactosidase [Cucumis melo var. makuwa] >TYJ98266.1 Beta-galactosidase [Cu...	[more]
KAA0049856.1	2.49e-97	90.30	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
KAA0057585.1	2.70e-96	91.52	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
KAA0036968.1	4.56e-96	92.73	Beta-galactosidase [Cucumis melo var. makuwa]	[more]

BLAST of IVF0013248 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013248.1	IVF0013248.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030048	actin filament-based movement
biological_process	GO:0015074	DNA integration
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0016459	myosin complex
molecular_function	GO:0003779	actin binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0003774	cytoskeletal motor activity
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003676	nucleic acid binding