IVF0013216 (gene) Melon (IVF77) v1

Overview


Name	IVF0013216
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Location	chr03: 19329677 .. 19329961 (-)
RNA-Seq Expression	IVF0013216
Synteny	IVF0013216

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACTGTCTCAACTAAGATCCAGAAAGTTTTGAATGAATATGTTGATATTATATCGCCCGAACTACCGAAGACATTGCCTCATCGACAGAGGAGTGATCACGAGGTCAAACTTGTCCCATGGAATAAGCCTCCAACAAAGAATGCTTACCAGATGGCTCTACCTGAGTTAGCTGAGCTCAGGAAACAGTTGGATAAGTTATTGGCCACCACATTTATCAGGCCTGCAAAAGTGCCTTATGGAGCATCTGTGCTGTTTCAAAAGAAGAAAGATGGACACTAG

mRNA sequence

ATGGGAACTGTCTCAACTAAGATCCAGAAAGTTTTGAATGAATATGTTGATATTATATCGCCCGAACTACCGAAGACATTGCCTCATCGACAGAGGAGTGATCACGAGGTCAAACTTGTCCCATGGAATAAGCCTCCAACAAAGAATGCTTACCAGATGGCTCTACCTGAGTTAGCTGAGCTCAGGAAACAGTTGGATAAGTTATTGGCCACCACATTTATCAGGCCTGCAAAAGTGCCTTATGGAGCATCTGTGCTGTTTCAAAAGAAGAAAGATGGACACTAG

Coding sequence (CDS)

ATGGGAACTGTCTCAACTAAGATCCAGAAAGTTTTGAATGAATATGTTGATATTATATCGCCCGAACTACCGAAGACATTGCCTCATCGACAGAGGAGTGATCACGAGGTCAAACTTGTCCCATGGAATAAGCCTCCAACAAAGAATGCTTACCAGATGGCTCTACCTGAGTTAGCTGAGCTCAGGAAACAGTTGGATAAGTTATTGGCCACCACATTTATCAGGCCTGCAAAAGTGCCTTATGGAGCATCTGTGCTGTTTCAAAAGAAGAAAGATGGACACTAG

Protein sequence

MGTVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDGH

Homology

[Close]

BLAST of IVF0013216 vs. ExPASy TrEMBL
Match: A0A5A7SNU7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00200 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 5.0e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 8   IQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDK 67
           IQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDK
Sbjct: 438 IQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDK 497

Query: 68  LLATTFIRPAKVPYGASVLFQKKKDGH 95
           LLATTFIRPAKVPYGASVLFQKKKDGH
Sbjct: 498 LLATTFIRPAKVPYGASVLFQKKKDGH 524

[Close]

BLAST of IVF0013216 vs. ExPASy TrEMBL
Match: A0A5A7VDT8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001250 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.3e-26
Identity = 62/93 (66.67%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 1   MGTVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAE 60
           +GTV  +I+KVLNEYVDI+ PEL ++LP R+  DH ++LVP  KPPTKNAY+MA PEL +
Sbjct: 78  IGTVPVEIRKVLNEYVDILLPELSRSLPPRRGIDHNIELVPGAKPPTKNAYRMASPELVK 137

Query: 61  LRKQLDKLLATTFIRPAKVPYGASVLFQKKKDG 94
           LRKQLD+ LA  FI+PAK  YGA VLFQKKKDG
Sbjct: 138 LRKQLDEFLAVGFIKPAKASYGAPVLFQKKKDG 170

[Close]

BLAST of IVF0013216 vs. ExPASy TrEMBL
Match: A0A6J1ID35 (uncharacterized protein LOC111471473 OS=Cucurbita maxima OX=3661 GN=LOC111471473 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 8.6e-26
Identity = 62/91 (68.13%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 3   TVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELR 62
           TV  +I +VLN+Y DI+   LP+TLP RQ  DHE++L+P  KPP KNAYQMA PELAELR
Sbjct: 566 TVPNEINEVLNDYADIMPESLPQTLPPRQGIDHEIELIPGVKPPAKNAYQMAPPELAELR 625

Query: 63  KQLDKLLATTFIRPAKVPYGASVLFQKKKDG 94
           KQLD+LL   FIRP K PYGA VLFQKKKDG
Sbjct: 626 KQLDELLKAGFIRPEKAPYGALVLFQKKKDG 656

[Close]

BLAST of IVF0013216 vs. ExPASy TrEMBL
Match: A0A6J1IEF9 (uncharacterized protein LOC111474945 OS=Cucurbita maxima OX=3661 GN=LOC111474945 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.5e-25
Identity = 61/91 (67.03%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 3   TVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELR 62
           TV  +I +VLN+Y DI+   LP+TLP R+  DHE++L+P  KPP KNAY+MA PELAELR
Sbjct: 537 TVPNEINEVLNDYADIMPESLPQTLPPRRGIDHEIELIPGVKPPAKNAYRMAPPELAELR 596

Query: 63  KQLDKLLATTFIRPAKVPYGASVLFQKKKDG 94
           KQLD+LL   FIRPAK PYGA VLFQKKKDG
Sbjct: 597 KQLDELLKAGFIRPAKAPYGAPVLFQKKKDG 627

[Close]

BLAST of IVF0013216 vs. ExPASy TrEMBL
Match: A0A6J1IEY4 (uncharacterized protein LOC111475733 OS=Cucurbita maxima OX=3661 GN=LOC111475733 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.3e-25
Identity = 61/91 (67.03%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 3   TVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELR 62
           TV  +I +VLN+Y DI+   LP+TLP R+  DHE++L+P  KPP KNAY MA PELAELR
Sbjct: 626 TVPNEINEVLNDYADIMPESLPQTLPPRRGIDHEIELIPGVKPPAKNAYWMAPPELAELR 685

Query: 63  KQLDKLLATTFIRPAKVPYGASVLFQKKKDG 94
           KQLD+LL   FIRPAK PYGA VLFQKKKDG
Sbjct: 686 KQLDELLKAGFIRPAKAPYGAPVLFQKKKDG 716

[Close]

BLAST of IVF0013216 vs. NCBI nr
Match: KAA0031686.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK04424.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 178 bits (451), Expect = 3.81e-51
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 8   IQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDK 67
           IQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDK
Sbjct: 438 IQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDK 497

Query: 68  LLATTFIRPAKVPYGASVLFQKKKDGH 94
           LLATTFIRPAKVPYGASVLFQKKKDGH
Sbjct: 498 LLATTFIRPAKVPYGASVLFQKKKDGH 524

[Close]

BLAST of IVF0013216 vs. NCBI nr
Match: KAA0065444.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (316), Expect = 2.24e-34
Identity = 62/93 (66.67%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 1   MGTVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAE 60
           +GTV  +I+KVLNEYVDI+ PEL ++LP R+  DH ++LVP  KPPTKNAY+MA PEL +
Sbjct: 78  IGTVPVEIRKVLNEYVDILLPELSRSLPPRRGIDHNIELVPGAKPPTKNAYRMASPELVK 137

Query: 61  LRKQLDKLLATTFIRPAKVPYGASVLFQKKKDG 93
           LRKQLD+ LA  FI+PAK  YGA VLFQKKKDG
Sbjct: 138 LRKQLDEFLAVGFIKPAKASYGAPVLFQKKKDG 170

[Close]

BLAST of IVF0013216 vs. NCBI nr
Match: KAA0041960.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK17895.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (301), Expect = 5.71e-31
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 3   TVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELR 62
           TV  +I +VL +Y D++   LPK+LP R+  DHE++LVP  KPP KNAY+MA PELAELR
Sbjct: 14  TVPKEIMRVLEKYHDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELR 73

Query: 63  KQLDKLLATTFIRPAKVPYGASVLFQKKKDG 93
           KQLD+LL   FIRPAK PYGA VLFQKKKDG
Sbjct: 74  KQLDELLNAEFIRPAKAPYGAPVLFQKKKDG 104

[Close]

BLAST of IVF0013216 vs. NCBI nr
Match: TYK28653.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (303), Expect = 1.26e-30
Identity = 61/91 (67.03%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 3   TVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELR 62
           TVS +I +VL +Y D++   LPK+LP R+  DHE++LVP  KPP KNAY+MA PELAELR
Sbjct: 80  TVSKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELR 139

Query: 63  KQLDKLLATTFIRPAKVPYGASVLFQKKKDG 93
           KQLD+LL   FIRPAK PYGA VLFQKKKDG
Sbjct: 140 KQLDELLNAGFIRPAKAPYGAPVLFQKKKDG 170

[Close]

BLAST of IVF0013216 vs. NCBI nr
Match: XP_022972954.1 (uncharacterized protein LOC111471473 [Cucurbita maxima])

HSP 1 Score: 124 bits (311), Expect = 1.45e-30
Identity = 62/91 (68.13%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 3   TVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELR 62
           TV  +I +VLN+Y DI+   LP+TLP RQ  DHE++L+P  KPP KNAYQMA PELAELR
Sbjct: 566 TVPNEINEVLNDYADIMPESLPQTLPPRQGIDHEIELIPGVKPPAKNAYQMAPPELAELR 625

Query: 63  KQLDKLLATTFIRPAKVPYGASVLFQKKKDG 93
           KQLD+LL   FIRP K PYGA VLFQKKKDG
Sbjct: 626 KQLDELLKAGFIRPEKAPYGALVLFQKKKDG 656

The following BLAST results are available for this feature:

BLAST of IVF0013216 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013216 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SNU7	5.0e-42	100.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold40...	[more]
A0A5A7VDT8	2.3e-26	66.67	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17...	[more]
A0A6J1ID35	8.6e-26	68.13	uncharacterized protein LOC111471473 OS=Cucurbita maxima OX=3661 GN=LOC111471473...	[more]
A0A6J1IEF9	1.5e-25	67.03	uncharacterized protein LOC111474945 OS=Cucurbita maxima OX=3661 GN=LOC111474945...	[more]
A0A6J1IEY4	3.3e-25	67.03	uncharacterized protein LOC111475733 OS=Cucurbita maxima OX=3661 GN=LOC111475733...	[more]

BLAST of IVF0013216 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031686.1	3.81e-51	100.00	reverse transcriptase [Cucumis melo var. makuwa] >TYK04424.1 reverse transcripta...	[more]
KAA0065444.1	2.24e-34	66.67	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0041960.1	5.71e-31	65.93	reverse transcriptase [Cucumis melo var. makuwa] >TYK17895.1 reverse transcripta...	[more]
TYK28653.1	1.26e-30	67.03	reverse transcriptase [Cucumis melo var. makuwa]	[more]
XP_022972954.1	1.45e-30	68.13	uncharacterized protein LOC111471473 [Cucurbita maxima]	[more]

BLAST of IVF0013216 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 24..94 e-value: 1.4E-11 score: 46.4
None	No IPR available	PANTHER	PTHR24559:SF330	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 9..92
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 9..92
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 11..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013216.1	IVF0013216.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0003743	translation initiation factor activity