IVF0013198 (gene) Melon (IVF77) v1

Overview


Name	IVF0013198
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr05: 11224278 .. 11224445 (-)
RNA-Seq Expression	IVF0013198
Synteny	IVF0013198

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATATTGCGACGACGTTTACGATGTGGACGAGGGGGATTCTGCATACGCGACAACTACTGCTTCAGAAGACATCCACTACATTGAGACGAAAAACGAGTGGTCTCAGTGGCGTGATGAACTAGCCGAATCGATGTTCACAGATTGGAAGTTGCGTAACGCTTAG

mRNA sequence

ATGACATATTGCGACGACGTTTACGATGTGGACGAGGGGGATTCTGCATACGCGACAACTACTGCTTCAGAAGACATCCACTACATTGAGACGAAAAACGAGTGGTCTCAGTGGCGTGATGAACTAGCCGAATCGATGTTCACAGATTGGAAGTTGCGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCGACGACGTTTACGATGTGGACGAGGGGGATTCTGCATACGCGACAACTACTGCTTCAGAAGACATCCACTACATTGAGACGAAAAACGAGTGGTCTCAGTGGCGTGATGAACTAGCCGAATCGATGTTCACAGATTGGAAGTTGCGTAACGCTTAG

Protein sequence

MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA

Homology

[Close]

BLAST of IVF0013198 vs. ExPASy TrEMBL
Match: A0A5A7SNH9 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001990 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.7e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 56
           MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA
Sbjct: 246 MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 300

[Close]

BLAST of IVF0013198 vs. ExPASy TrEMBL
Match: A0A5D3D656 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold6384G00040 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.7e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 56
           MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA
Sbjct: 232 MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 286

[Close]

BLAST of IVF0013198 vs. ExPASy TrEMBL
Match: A0A1S4DU05 (uncharacterized protein LOC107990543 OS=Cucumis melo OX=3656 GN=LOC107990543 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.7e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 56
           MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA
Sbjct: 143 MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 197

[Close]

BLAST of IVF0013198 vs. ExPASy TrEMBL
Match: A0A5A7U2P3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001050 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.9e-22
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1   MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 56
           MTYCDDVY+VDEGDSAYATTTASEDIHYIE KN WSQWRDELAESMFTDW+LRNA
Sbjct: 271 MTYCDDVYNVDEGDSAYATTTASEDIHYIEMKNNWSQWRDELAESMFTDWQLRNA 325

[Close]

BLAST of IVF0013198 vs. ExPASy TrEMBL
Match: A0A5D3BDZ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00280 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-21
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1  MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 56
          MTYCDD+ DVDEGDSAYATTTASEDIHYIET NEWSQWRDELAESMFTDW+LRNA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

[Close]

BLAST of IVF0013198 vs. NCBI nr
Match: XP_016899482.1 (PREDICTED: uncharacterized protein LOC107990543 [Cucumis melo])

HSP 1 Score: 120 bits (300), Expect = 1.86e-32
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 55
           MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA
Sbjct: 143 MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 197

[Close]

BLAST of IVF0013198 vs. NCBI nr
Match: TYK19044.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (300), Expect = 1.59e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 55
           MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA
Sbjct: 232 MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 286

[Close]

BLAST of IVF0013198 vs. NCBI nr
Match: KAA0032340.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (300), Expect = 2.14e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 55
           MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA
Sbjct: 246 MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 300

[Close]

BLAST of IVF0013198 vs. NCBI nr
Match: KAA0054051.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (279), Expect = 5.31e-31
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1  MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 55
          MTYCDD+ DVDEGDSAYATTTASEDIHYIET NEWSQWRDELAESMFTDW+LRNA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

[Close]

BLAST of IVF0013198 vs. NCBI nr
Match: KAA0048496.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK28288.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (280), Expect = 3.14e-28
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1   MTYCDDVYDVDEGDSAYATTTASEDIHYIETKNEWSQWRDELAESMFTDWKLRNA 55
           MTYCDDVY+VDEGDSAYATTTASEDIHYIE KN WSQWRDELAESMFTDW+LRNA
Sbjct: 271 MTYCDDVYNVDEGDSAYATTTASEDIHYIEMKNNWSQWRDELAESMFTDWQLRNA 325

The following BLAST results are available for this feature:

BLAST of IVF0013198 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013198 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SNH9	4.7e-24	100.00	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3D656	4.7e-24	100.00	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S4DU05	4.7e-24	100.00	uncharacterized protein LOC107990543 OS=Cucumis melo OX=3656 GN=LOC107990543 PE=...	[more]
A0A5A7U2P3	9.9e-22	92.73	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BDZ0	1.3e-21	92.73	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0013198 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899482.1	1.86e-32	100.00	PREDICTED: uncharacterized protein LOC107990543 [Cucumis melo]	[more]
TYK19044.1	1.59e-31	100.00	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0032340.1	2.14e-31	100.00	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0054051.1	5.31e-31	92.73	retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon p...	[more]
KAA0048496.1	3.14e-28	92.73	retrotransposon protein [Cucumis melo var. makuwa] >TYK28288.1 retrotransposon p...	[more]

BLAST of IVF0013198 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013198.1	IVF0013198.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding