IVF0013060 (gene) Melon (IVF77) v1

Overview
NameIVF0013060
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPMD domain-containing protein
Locationchr02: 13200444 .. 13200752 (-)
RNA-Seq ExpressionIVF0013060
SyntenyIVF0013060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTACTTCACAGAACGATTCTTGTCCGAAGTTCGACACCTCGTAATACTTTCTGATAGAAATCAACCCAGAGAAGATGGACTTAGTCTCCTTGTGGAGAAGCCATGGGCTGGCGCTGTTGCAGATTATTGGCCACGCTTAGACAACAACTCAATTCTTCCCAGATTATCCGTGGAGATACCTTTGTCTGAGGAAAAAAGCGTATGGGTCTTGCAATCTTCTATCCACAATGAGGCTCCTAATTCTAACAGAGCTCTCACTCTTGGACAATGTTTAATTGAAGGTCAAACACGTTGGGTACTGTGA

mRNA sequence

ATGGTTTACTTCACAGAACGATTCTTGTCCGAAGTTCGACACCTCGTAATACTTTCTGATAGAAATCAACCCAGAGAAGATGGACTTAGTCTCCTTGTGGAGAAGCCATGGGCTGGCGCTGTTGCAGATTATTGGCCACGCTTAGACAACAACTCAATTCTTCCCAGATTATCCGTGGAGATACCTTTGTCTGAGGAAAAAAGCGTATGGGTCTTGCAATCTTCTATCCACAATGAGGCTCCTAATTCTAACAGAGCTCTCACTCTTGGACAATGTTTAATTGAAGGTCAAACACGTTGGGTACTGTGA

Coding sequence (CDS)

ATGGTTTACTTCACAGAACGATTCTTGTCCGAAGTTCGACACCTCGTAATACTTTCTGATAGAAATCAACCCAGAGAAGATGGACTTAGTCTCCTTGTGGAGAAGCCATGGGCTGGCGCTGTTGCAGATTATTGGCCACGCTTAGACAACAACTCAATTCTTCCCAGATTATCCGTGGAGATACCTTTGTCTGAGGAAAAAAGCGTATGGGTCTTGCAATCTTCTATCCACAATGAGGCTCCTAATTCTAACAGAGCTCTCACTCTTGGACAATGTTTAATTGAAGGTCAAACACGTTGGGTACTGTGA

Protein sequence

MVYFTERFLSEVRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLSVEIPLSEEKSVWVLQSSIHNEAPNSNRALTLGQCLIEGQTRWVL
Homology
[Close]
BLAST of IVF0013060 vs. ExPASy TrEMBL
Match: A0A5A7U2Q8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001390 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 6.2e-46
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1   MVYFTERFLSEVRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLSVE 60
           MVYFTERFLS VRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLSVE
Sbjct: 74  MVYFTERFLSGVRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLSVE 133

Query: 61  IPLSEEKSVWVLQSSIHNEAPNSNRALTLGQCLIE 96
           IPLSEEKSVWVLQSSIHNEAPNS+RALTLGQCLIE
Sbjct: 134 IPLSEEKSVWVLQSSIHNEAPNSSRALTLGQCLIE 168

[Close]
BLAST of IVF0013060 vs. ExPASy TrEMBL
Match: A0A5D3C3H5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00690 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 6.2e-46
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1   MVYFTERFLSEVRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLSVE 60
           MVYFTERFLS VRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLSVE
Sbjct: 17  MVYFTERFLSGVRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLSVE 76

Query: 61  IPLSEEKSVWVLQSSIHNEAPNSNRALTLGQCLIE 96
           IPLSEEKSVWVLQSSIHNEAPNS+RALTLGQCLIE
Sbjct: 77  IPLSEEKSVWVLQSSIHNEAPNSSRALTLGQCLIE 111

[Close]
BLAST of IVF0013060 vs. ExPASy TrEMBL
Match: A0A5A7TZ08 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00990 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-45
Identity = 91/100 (91.00%), Postives = 94/100 (94.00%), Query Frame = 0 

Query: 1   MVYFTERFLSEVRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLSVE 60
           MVYFTERFLSEVRHLVILSDRNQPREDGLSL+VE PWAGA AD+WPRLDNNS+LPRLSVE
Sbjct: 60  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVE 119

Query: 61  IPLSEEKSVWVLQSSIHNEAPNSNRALTLGQCLIEGQTRW 101
           IPLSE KS WVLQSSIHNEAPNS RALTLGQ LIEGQTRW
Sbjct: 120 IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW 159

[Close]
BLAST of IVF0013060 vs. ExPASy TrEMBL
Match: A0A5A7TX42 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00950 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.1e-45
Identity = 90/100 (90.00%), Postives = 94/100 (94.00%), Query Frame = 0 

Query: 1   MVYFTERFLSEVRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLSVE 60
           MVYFTERFLS VRHLVILSDRNQPREDGLSL+VEKPWAGA AD+WPRLDNNS+LPRLSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSEEKSVWVLQSSIHNEAPNSNRALTLGQCLIEGQTRW 101
           +PLSE KS WVLQSSIHNEAPNS RALTLGQ LIEGQTRW
Sbjct: 61  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW 100

[Close]
BLAST of IVF0013060 vs. ExPASy TrEMBL
Match: A0A5A7UET3 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G001110 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.1e-45
Identity = 90/100 (90.00%), Postives = 94/100 (94.00%), Query Frame = 0 

Query: 1   MVYFTERFLSEVRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLSVE 60
           MVYFTERFLS VRHLVILSDRNQPREDGLSL+VEKPWAGA AD+WPRLDNNS+LPRLSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSEEKSVWVLQSSIHNEAPNSNRALTLGQCLIEGQTRW 101
           IPLSE KS W+LQSSIHNEAPNS RALTLGQ LIEGQTRW
Sbjct: 61  IPLSEGKSAWILQSSIHNEAPNSGRALTLGQRLIEGQTRW 100

[Close]
BLAST of IVF0013060 vs. NCBI nr
Match: KAA0048380.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 188 bits (478), Expect = 8.71e-59
Identity = 91/100 (91.00%), Postives = 94/100 (94.00%), Query Frame = 0 

Query: 1   MVYFTERFLSEVRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLSVE 60
           MVYFTERFLSEVRHLVILSDRNQPREDGLSL+VE PWAGA AD+WPRLDNNS+LPRLSVE
Sbjct: 60  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVE 119

Query: 61  IPLSEEKSVWVLQSSIHNEAPNSNRALTLGQCLIEGQTRW 100
           IPLSE KS WVLQSSIHNEAPNS RALTLGQ LIEGQTRW
Sbjct: 120 IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRW 159

[Close]
BLAST of IVF0013060 vs. NCBI nr
Match: KAA0057574.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 183 bits (465), Expect = 2.10e-57
Identity = 88/100 (88.00%), Postives = 93/100 (93.00%), Query Frame = 0 

Query: 1   MVYFTERFLSEVRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLSVE 60
           MVYFTERFLS VRHLVILSDRNQPREDGLSL+VEKPWAGA AD+WPRLDNNS+LPRLSVE
Sbjct: 17  MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 76

Query: 61  IPLSEEKSVWVLQSSIHNEAPNSNRALTLGQCLIEGQTRW 100
           +PLSE KS WVLQSSIHNEA NS +ALTLGQ LIEGQTRW
Sbjct: 77  VPLSEGKSAWVLQSSIHNEASNSGKALTLGQRLIEGQTRW 116

[Close]
BLAST of IVF0013060 vs. NCBI nr
Match: TYK06377.1 (hypothetical protein E5676_scaffold163G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 190 bits (482), Expect = 1.13e-55
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1   MVYFTERFLSEVRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLSVE 60
           MVYFTERFLS VRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLSVE
Sbjct: 17  MVYFTERFLSGVRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLSVE 76

Query: 61  IPLSEEKSVWVLQSSIHNEAPNSNRALTLGQCLIE 95
           IPLSEEKSVWVLQSSIHNEAPNS+RALTLGQCLIE
Sbjct: 77  IPLSEEKSVWVLQSSIHNEAPNSSRALTLGQCLIE 111

[Close]
BLAST of IVF0013060 vs. NCBI nr
Match: KAA0053734.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 187 bits (476), Expect = 1.35e-55
Identity = 90/100 (90.00%), Postives = 94/100 (94.00%), Query Frame = 0 

Query: 1   MVYFTERFLSEVRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLSVE 60
           MVYFTERFLS VRHLVILSDRNQPREDGLSL+VEKPWAGA AD+WPRLDNNS+LPRLSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSEEKSVWVLQSSIHNEAPNSNRALTLGQCLIEGQTRW 100
           IPLSE KS W+LQSSIHNEAPNS RALTLGQ LIEGQTRW
Sbjct: 61  IPLSEGKSAWILQSSIHNEAPNSGRALTLGQRLIEGQTRW 100

[Close]
BLAST of IVF0013060 vs. NCBI nr
Match: KAA0050122.1 (hypothetical protein E6C27_scaffold675G001390 [Cucumis melo var. makuwa])

HSP 1 Score: 190 bits (482), Expect = 2.08e-55
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1   MVYFTERFLSEVRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLSVE 60
           MVYFTERFLS VRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLSVE
Sbjct: 74  MVYFTERFLSGVRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLSVE 133

Query: 61  IPLSEEKSVWVLQSSIHNEAPNSNRALTLGQCLIE 95
           IPLSEEKSVWVLQSSIHNEAPNS+RALTLGQCLIE
Sbjct: 134 IPLSEEKSVWVLQSSIHNEAPNSSRALTLGQCLIE 168

The following BLAST results are available for this feature:
BLAST of IVF0013060 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0013060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U2Q86.2e-4697.89PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5D3C3H56.2e-4697.89PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5A7TZ081.8e-4591.00Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5A7TX423.1e-4590.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UET33.1e-4590.00Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
BLAST of IVF0013060 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048380.18.71e-5991.00putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0057574.12.10e-5788.00putative mitochondrial protein [Cucumis melo var. makuwa][more]
TYK06377.11.13e-5597.89hypothetical protein E5676_scaffold163G00690 [Cucumis melo var. makuwa][more]
KAA0053734.11.35e-5590.00putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0050122.12.08e-5597.89hypothetical protein E6C27_scaffold675G001390 [Cucumis melo var. makuwa][more]
BLAST of IVF0013060 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0013060.1IVF0013060.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane