IVF0013041 (gene) Melon (IVF77) v1

Overview


Name	IVF0013041
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	U6 snRNA-associated Sm-like protein LSm4
Location	chr04: 10028697 .. 10035402 (+)
RNA-Seq Expression	IVF0013041
Synteny	IVF0013041

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTATGTCCTTTCCTCTCCTTCTTATTAGTATTATTAAAAAAATAGAAAAACAAAAAAAAAAAAGAAGAAATCGATAGTCTCTGCCTTTCCCTCTCTCGATCTTTCCGTTCGCCCTAGGACCAGCCTCCGCCGTCTCCCTCCCTCGACGTCATCTCTCCTTACCTCTCCATCGCTCTCCTCCGCTCACCATCTCCCTCTTCTGACGACCAGCAACCCACCGGTTCTCCCTCGCGCTCACCGTCTCCCTATCTCCTCCAGCCGACGCCATCACCTGGCGACCGCCATTGGCCGCTCGACTCATCGGAGACAGCCATCTCGTCGCGCTGCGCCACCATCTGCCACCGCTAGCCTCGCCAAATCTGGAAGTTGAGGTTAGTTTTGGGCTGTCCGGTGAGTTTTGTGGGTTTTTCTTAAAGATCTATGCTACCCTTTAGCCTTTGGCTTCAAATGACTAATTCCTATCACGTTTTGGTATTAGATTGAAGAGTAGCGGTGCCGTTTAATTGCTGTCCAGCGGGTTTTCTTTAAAATTTTGGTACTTAGTAAAGGTGAGAATTATTAAGATGTGAAATAGAGTTTTGGGTAAGGATTTGCTGTTATTTGGGTTTCTTGAGGGTTTTCGATTATCCATCAAGTTTTGACTTTGATTTTGCAATACCCATTACATTTAGTTGTTAGATTTGGAGTCTTTGGAGATTTTAGCCGCTGTCCAGCCTTTAGGAGGATTATGCCTTTTCGCACACAACTTAGGTTAGATTCTAAGCTTTTTGGGGTGGATTTTGAGTACCCATCCAATTTTAGTGATAACATCTAGTAACCCAAAATAGTGGATGCTTGATTTCGAATTTAGAAGGTAGTTAGGATGTTGTCCATTGAAGTTAAGAGTACCTTGCTAAGTTCTTGGGAAGGTTTGGAGTAATTTATTGGGTTTTTCTAGAGTTCTTAAATACCCATTTAATTCTTGTGTTAATATTGAATAGCCCATGATGTTGAAAGCGAGATTTCGAAGTTAGAAGGTCGTTAGGGTGCTGTCCATTGGAATTAAGGCTACTTTGATAAGTCTGAGCATAATCTTTAGCCATAACGCATGCTTTTAAACAAGCTATTGATCCATTGCTATTAAATTGCAAACACTCATTTGCACCTAATAGTCTTATTCTTGCAAGAAGAGATACTTAATCCCAAGTACCATTATCATCTTAGGTGTTCACCTCTCCAATCATCGCGTTGCAATCTTAGGATAAGGGTAAGAGATTTAACAAACGAACATGTAGGAGATGGTAATTGGTCATAAGATATACAAGAAGCAATAGGATAAGGGCAAGAACATATACCTTTATGAAGGGCAATGGGAAGCTCATCTCTTGGTTCTTGATCCATTAACAAGAGTCTTTGGGACAAAACATTCAACTAGAGGTTGTTGCCGAAGAGAGTAGATTTTAGTTATAGTTGGACGATTAGGGTAGACGTGGGAGGAGATAGATCAAGGGAGGGTGTTGGAAATAGATCAAGGGAGGAGGGAGTTGGAGACGTGAGAGTATAAAGGTAAAGATCCTCCTCCTCTCCTTGATTCGTACTATGCGAAGGGATAGTGAAAGGCTTATCATCAAAGAAACTAACGTCCACAAAATATCTATTCAAATTTGGATAATAACCTATGTATTCGTTTTGAACACGAGAATAGCCTAAGAAAATGCACTTCAAAGACTTGGGGTCTAACTCTATTTAATGAAGACGAACATCTTAAACAAAACAATTACAACCTAATATTTTAGGCTCAACAAGAAACAATGGTTTTGTTGAAAGAGAACATGAGAAGGAGTCTGACCTTGAAGAGCAGACGAAGGCATTTGGTTTATAAGAAAACAAGCTGTGGAAGTTGCATCAACCTGAAAATGCTTTGGAACATGCATTTGAAAGGATAATGCCCGTGCAGTTTTAAGAAGATGTCCATTCTTTTGTTTCGCAACCCTATTTTGGGATTGGAGTATCAGCACAAGATGATTGTATGTACAAAGGTACAAATTGAGTGCTTATGAAAAATACTCCTCGACATTGTCACATCTCGAGGTTTTAAGCACACACCAAACTGCATTAGAATTTCAACATGGAAATTATAGAAATGAGGAAGTAACTCAAAACAATTTTTTCTAAAATATAACCAAGTCATGCAAGAGTGATCATCTACAAAGGTAACAAAATATAGAAATTCAGTTTTGATGCCCTTTGTACATACAATCATCTTGTGCTAAGACGATGAAATTCAGCAAATTGATATGAGTCACAATTCAATGAAGACAAGTTATGTAATTGAGGACAAATCATTCTCAAGGTTGAGAGAGATGGATGACCAGGACGACAATGGGCATCAAAAGGAGAAACAACTCTGGATAAGCAACGATTGTTGATGTCGATACTTGGTGATTGTATCAAAACTATGAAGTCCTTCAAATTCATGTCATTTCCAATAATCTTTTTTGTTACATGATCTTGAAGCAAGTAATAGCCAAGATAGAATGAGATGCAACAACTAAGGTCAAAACTAATTTGACTAATAGTGATCAAGTTGAATGACAATGAAGGTAAATGTAGGACAAATGACGAGAAAGGGATTGAGGTGAGATTTATAGTGCCAGATCCAATAACAGAAGACTTTGATCCATGTGCTAGGGTAATACCGGTAATGGATGTAGATGACAAAGTTGTAGAAAATAACTTGGGATTACTTGTCATATGAGCGGTAGCACTGGAGTCTATGACCCATTTTGTAGAGGAAAATAGACAATGATTTATGTTACCTGAATTAGCAACGATTATAATAAGGCACATGCTAATGATGAAGGAGATGCTTTCAACGAGTTTTGGTACTTTTGAGATTTAGTACAGCAACCATGGATAGATTGAGCCTGCAAGTGAACCAAATTAGACATCACTATGGGATCTTGTTAGGCCATAGGATAGTAACAACCACACCAGAAGCCACACCAAATCAGCCAGCCACACCAAACCAAATGAGCAAAAAACAGCCACAAAATAGATCAAAACAGCTGCAACCCCTGAAACAGTTGACTTTCTTTCAAATATTGTCACTGTTGAATGGATTTCAATGGAACCGAAGGCTCAAACTGATCGGAAACCAAGATCTGAGATGCATCTTACCAATGATAGCCCAAATTGGAACAGAACAACAACAAACTCTAAAATTAAAAGGGTATTTTTTCGAAGAACGTCACACCTGATTATCTAAAGGAACCAAATGCACAAACCAACAGGAAAACACAAATGGAGACGACCCAGCACAAAATGGACCTCCCATGCACTCAGATGTGTGAGGGATGAGGCAACGTCTTTTAGCGGTGTGTGAAACTCACGTGCGGCTTCTTCTGACAAGCGACGAACTCAGATATAGGCATTCCTAGAAACCCTAAATAAAGACTAGTGAATTACAATAAAGGACAAAAGTCTAATAAGCTCCTATAGTTACGTATATACTATAATATGAATATATGATCATCTGGGAACTTACATTCTTTTGGTCCTCTTTTTCTACAGGTAGTATCTGCTTCTATTAGTATCTGCTTCTAGTTGTGTCTGCTTCGTATCTTTAAAGATGGTATGTTCCCAAACTTGTTTTTTCATCTGTTCCTATTTTTCTTTTTGATCCACGATTAATTTTGCTCGTGTAACTTCAGAGTGTATTTATTCATTTAATGTCACTGATAAATTAAATTATTTCCTTCAAATGCTTGGTTGTCAGCTGTTGTTTCCGTTTTTCCCTTCATGGGTGTGCTCTAATCGATATTTTTTATTGCAGCTTCCTCTTTCCCTCCTTAAGACTGCTCAAGGACACCCCATGGTAAGGGCTTTCTTTCAGTTGCCTTTCTGTTCATACACAGGAGAGCTTACATGCACCTATAGTAAATTCAAGAGAGAGTATCACATTTGATTGCTACTTTAAAGTTTTGATTGATTTGATATCCAGATAGGTGGGATAATACGTTTCAAATTGAGCCCCTTGAGCTTCTATTATGGTTATTGTTATTATTATTTTGGATTATTTTTTGCTTGGCTCAATCTCTTGTGCCATCCCAGTGATACATGGTGGTTGTATATGGCTTTGCTTTGTCTTGAGCTACTCCGGCTGTTGTCAAGAACTTCTACTCTAGGACTTTGTTTATGTGCTTCTAAAAATGTATAATTTCTGTGTTGCAACAGTTGGTGGAATTAAAAAATGGTGAGACTTACAACGGCCATTTGGTTAATTGTGACACATGGATGAACATCCATCTTCGGGAAGTCATCTGCACTTCTAAAGTAATGCACTTCTATTTTATGGATGATTTTTTTCTCTTTTGGATTTTTCTTCTTTCTTTAGGAGTTTGAACTTATAATGACCATGTTTTCCAATTGTCAAATGTCAGGACGGTGATCGGTTTTGGCGAATGCCCGAATGTTATATTCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTATTTATGAAAACTGTTGCCTTTTTTCCTTTTTAATTGTGTGATGTTTGATGCATCAAAGTACCTTACATCTAACATGTGGATGTAAACAAAAAAGTCAGTTGCCTTAATTTAGTTCTTTTTCCACTTATGTCACATGCTTCTCAGCTGCATCTCATTTTTATTTCTGGTTTCTAATATTATTTTCTCTCTTCTTTGACTTTTACTCGTACAACTTTGTCATCATCTTTAACTTGTGAATGTGATCTTATCGACATCCACCAAAAAGTTATTTAATAAAACTGTTCTTTTTCTTTCTGGTGATTTAAGTTATATCACTCCCTTCTTGTAATTTGCCCTAACTTTAGTGATTTCTCTAGTTTTTGATAAACTGTTTCAGTATTGTTAGCTCTTTCATACATGCATGGACCTGAGTGTACACTTACAAGCTGTTTGGATTCCTCTCTTAAAAACAACAATTATCCCAACAAAAGAGTAGAAACAGAGGCAGCACTCTCTGATTTACTTATATTCAATAAACACAAAGTGAACAAGGAAATATTAACAGAATGACAGAGAAACAGCAAGGAAATACACACCAAAATAGCCCAGCCTTATCATATGGCTGTCGGCTCCTCCCTAAAAGACAGCAGCCTTTTCCTATATAAACCCATCTCACCAATCCCTAAAATTATTCTATTTATACTCATCATTTGTGGGCCCCACCAGCATCATTCTTTTCTTCATTTCTCTTTCCTAGCTCTGCCCCTGTGAAATTACTTTCTTACCCTTCCTTTTGTGTTGATGAATAATCGGGGGTCTTACACATGCACTCCCAAAATGTTCTATTTCACTTATTTTATTGTTTTTCAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGGTATACTGTTTATGCATTTTATAATATATAATGATTGTCAAATGAAGTAAAAAGGTAAAATGTATTTTGCATTTAGGAAATTTGAAATTGTAAAACCAATTAATTCTTGAAGTTCTCCCAAAATAATAATAATAATAAATTAACTCTTAAATCTTTTCTTTCTGGAATCTTGTACATTATCCATGTTGTAAATCTGAAAAAAGATGGACATTCGATAACATCTCATAAAATACTAAATACATTTGCTAAGGTTTGCATGTATCGGACTCTTGATTGTCCAGAACATCTAATGAGTCTAGATAAACTATGCTATTCTAGACCAAGATTAATTTATCCTTTGCCCTTGGTTTCTGACAAGTAAGGAAACTGATGCTTTGACACCAAATTTTCAGATAGAAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCGTGAGGATGGTCCTGGTGGCAGACCAGCTAAAGGAATGGGGAGAGGCTTTGATGATGGTGCGAAAGCTGCTTCTGGCGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCCGGTGCGAACAGAGGTAAACTAAACTATCTTTGTTATTATGAAACTTGAATTTGCTGTTTTAGCTTCCTCATTTGATAACAGTTTTGCTTTTGCTTTTGCCTTTCTATGCCCTGTATAAACTATATCCCTTATCTATTCAATGTTTTCTTCGTTTAATTTTTCAACCCTTAAGAAGACTTGGGCCAAATTTACAAACGAAATACAGGGGTTTCATAAACTATTTCCGTTTTTCAGTTTTCTAAAATTTAGCTTTGACTTCAAAGTTGACTTGGAGTAGGTTAGAAATTAATGGAAAAGGGTTAAATAGAACAGAGTATAAACAAGAAAAATGTTTGTAAAAAAAGAAAAAAAAAAAACTATAAACAAAAACGTTTACAAGTGGACTTCTTATCCCATCTTATTAATCTTGTTTTTTCTTTGTCTTTTCTCTTGACATAGTTGGAGGCAGGGGACGAGGTTGATCAGATTGATATCGGTAACAGATGAAATGGACTAACTACATATGCAAGCTCTGCCCAGTTTTCACGTCGGCAGCCGTGTGTTTTCTGTTTTATGCATTTTCTTTTGGTCTGGATTCTTGAGTGAATATTTATGCTGATTGTAGTGCCAGACCTCTGCGAAAGTTGTAAACTAGACAAACGGTTCATTTTAATTAATGGTGTAATTGATTGCAAATTTGGTTTATATTTTTGGGCATTGGAATGTAGATAGTTTCATGTTTCCAGATGTTTTCTATTGGCCTTAGAGAGGCTGTCATAAATTTAGCCCCA

mRNA sequence

ATTATGTCCTTTCCTCTCCTTCTTATTAGTATTATTAAAAAAATAGAAAAACAAAAAAAAAAAAGAAGAAATCGATAGTCTCTGCCTTTCCCTCTCTCGATCTTTCCGTTCGCCCTAGGACCAGCCTCCGCCGTCTCCCTCCCTCGACGTCATCTCTCCTTACCTCTCCATCGCTCTCCTCCGCTCACCATCTCCCTCTTCTGACGACCAGCAACCCACCGGTTCTCCCTCGCGCTCACCGTCTCCCTATCTCCTCCAGCCGACGCCATCACCTGGCGACCGCCATTGGCCGCTCGACTCATCGGAGACAGCCATCTCGTCGCGCTGCGCCACCATCTGCCACCGCTAGCCTCGCCAAATCTGGAAGTTGAGGTTAGTTTTGGGCTGTCCGATTGAAGAGTAGCGGTGCCGTTTAATTGCTGTCCAGCGGGTTTTCTTTAAAATTTTGGTACTTAGTAAAGGTAGTATCTGCTTCTATTAGTATCTGCTTCTAGTTGTGTCTGCTTCGTATCTTTAAAGATGCTTCCTCTTTCCCTCCTTAAGACTGCTCAAGGACACCCCATGTTGGTGGAATTAAAAAATGGTGAGACTTACAACGGCCATTTGGTTAATTGTGACACATGGATGAACATCCATCTTCGGGAAGTCATCTGCACTTCTAAAGACGGTGATCGGTTTTGGCGAATGCCCGAATGTTATATTCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGATAGAAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCGTGAGGATGGTCCTGGTGGCAGACCAGCTAAAGGAATGGGGAGAGGCTTTGATGATGGTGCGAAAGCTGCTTCTGGCGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCCGGTGCGAACAGAGTTGGAGGCAGGGGACGAGGTTGATCAGATTGATATCGGTAACAGATGAAATGGACTAACTACATATGCAAGCTCTGCCCAGTTTTCACGTCGGCAGCCGTGTGTTTTCTGTTTTATGCATTTTCTTTTGGTCTGGATTCTTGAGTGAATATTTATGCTGATTGTAGTGCCAGACCTCTGCGAAAGTTGTAAACTAGACAAACGGTTCATTTTAATTAATGGTGTAATTGATTGCAAATTTGGTTTATATTTTTGGGCATTGGAATGTAGATAGTTTCATGTTTCCAGATGTTTTCTATTGGCCTTAGAGAGGCTGTCATAAATTTAGCCCCA

Coding sequence (CDS)

ATGCTTCCTCTTTCCCTCCTTAAGACTGCTCAAGGACACCCCATGTTGGTGGAATTAAAAAATGGTGAGACTTACAACGGCCATTTGGTTAATTGTGACACATGGATGAACATCCATCTTCGGGAAGTCATCTGCACTTCTAAAGACGGTGATCGGTTTTGGCGAATGCCCGAATGTTATATTCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGATAGAAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCGTGAGGATGGTCCTGGTGGCAGACCAGCTAAAGGAATGGGGAGAGGCTTTGATGATGGTGCGAAAGCTGCTTCTGGCGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCCGGTGCGAACAGAGTTGGAGGCAGGGGACGAGGTTGA

Protein sequence

MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDDGAKAASGGRGKGGPGGKPGANRVGGRGRG

Homology

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BLAST of IVF0013041 vs. ExPASy Swiss-Prot
Match: Q43582 (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.6e-58
Identity = 123/150 (82.00%), Postives = 127/150 (84.67%), Query Frame = 0


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGR-GREDGPGGRPAKGMGRGFD 120
           +RGNTIKYLRVPDEVIDKVQEE KSR DRKP GVGR R R GR+D   GR  KG+GRG D
Sbjct: 61  VRGNTIKYLRVPDEVIDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIGRGMD 120

Query: 121 DGAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           DG    + GRGKGGP  K G  R GGRGRG
Sbjct: 121 DG---GAKGRGKGGPSAKSG-GRGGGRGRG 146

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BLAST of IVF0013041 vs. ExPASy Swiss-Prot
Match: Q9LGE6 (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0256900 PE=2 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.9e-57
Identity = 124/151 (82.12%), Postives = 130/151 (86.09%), Query Frame = 0


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEET-KSRADRKPLGVGRGRGRGR-EDGPGGRPAKGMGRGF 120
           IRGNTIKYLRVPDEVIDKVQEET KSR+DR+P GVGRGRGRG     PGGR   G+GRG 
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRGDIGTKPGGR---GIGRGQ 120

Query: 121 DDGAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           DDG     GGRG+GG GGK G  + GGRGRG
Sbjct: 121 DDGGSKGGGGRGRGGIGGK-GGIKGGGRGRG 147

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BLAST of IVF0013041 vs. ExPASy Swiss-Prot
Match: Q9ZRU9 (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica OX=28930 GN=LSM4 PE=2 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.5e-56
Identity = 121/150 (80.67%), Postives = 126/150 (84.00%), Query Frame = 0


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELK+GETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMP+CY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRG-FD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKP GVGRGRGRGRE+G G R  +G GR    
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREEGSGARQVRGAGRDVMM 120

Query: 121 DGAKAASGGRGKGGPGGKPGANRVGGRGRG 150
             AKA    RG+G   GK G    GGRGRG
Sbjct: 121 QVAKAWVEVRGRGASAGKSGGR--GGRGRG 148

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BLAST of IVF0013041 vs. ExPASy Swiss-Prot
Match: F4K4E3 (Sm-like protein LSM4 OS=Arabidopsis thaliana OX=3702 GN=LSM4 PE=1 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 9.7e-53
Identity = 115/149 (77.18%), Postives = 119/149 (79.87%), Query Frame = 0


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEE K+R DRKP GVGRGRGRG +DG               
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGVDDG--------------- 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GA+    GRG+G   GK G NR  GRGRG
Sbjct: 121 GAR----GRGRGTSMGKMGGNRGAGRGRG 129

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BLAST of IVF0013041 vs. ExPASy Swiss-Prot
Match: Q9QXA5 (U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus OX=10090 GN=Lsm4 PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.2e-39
Identity = 90/140 (64.29%), Postives = 102/140 (72.86%), Query Frame = 0


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1   MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRG-FD 120
           IRG+TIKYLR+PDE+ID V+EE            GRGRG  ++    GR   G GRG F 
Sbjct: 61  IRGSTIKYLRIPDEIIDMVREEAAK---------GRGRGGPQQKQQKGRGMGGAGRGVFG 120

Query: 121 DGAKAASGGRGKGGPGGKPG 140
              +    G G+G P  KPG
Sbjct: 121 GRGRGGIPGAGRGQPEKKPG 131

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BLAST of IVF0013041 vs. ExPASy TrEMBL
Match: A0A1S3BYD6 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis melo OX=3656 GN=LOC103494929 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.3e-76
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

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BLAST of IVF0013041 vs. ExPASy TrEMBL
Match: A0A6J1CRC5 (U6 snRNA-associated Sm-like protein LSm4 OS=Momordica charantia OX=3673 GN=LOC111013478 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 8.5e-76
Identity = 146/149 (97.99%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLG+GRGRGRGREDGPGGRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           G+KA+SGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GSKASSGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of IVF0013041 vs. ExPASy TrEMBL
Match: A0A0A0K9I4 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.4e-75
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPG RPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of IVF0013041 vs. ExPASy TrEMBL
Match: A0A0A0L3Q6 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.4e-75
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 96  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 155

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPG RPAKGMGRGFDD
Sbjct: 156 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 215

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 216 GAKAASGGRGKGGPGGKPGANRVGGRGRG 244

[Close]

BLAST of IVF0013041 vs. ExPASy TrEMBL
Match: A0A6J1J2N4 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucurbita maxima OX=3661 GN=LOC111480701 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 1.9e-75
Identity = 147/149 (98.66%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETK+RADRKP GVGRGRGRGREDGPGGRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKTRADRKPPGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of IVF0013041 vs. NCBI nr
Match: XP_008454536.1 (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo] >XP_008454538.1 PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo] >XP_008454539.1 PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo])

HSP 1 Score: 294 bits (752), Expect = 3.30e-100
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of IVF0013041 vs. NCBI nr
Match: XP_011653886.2 (probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_031740554.1 probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_031740555.1 probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_031740556.1 probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_031740557.1 probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >KAE8649735.1 hypothetical protein Csa_012390 [Cucumis sativus])

HSP 1 Score: 291 bits (746), Expect = 2.71e-99
Identity = 147/149 (98.66%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149
           GAKA++GGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKASTGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of IVF0013041 vs. NCBI nr
Match: XP_022143617.1 (probable U6 snRNA-associated Sm-like protein LSm4 [Momordica charantia])

HSP 1 Score: 291 bits (745), Expect = 3.86e-99
Identity = 146/149 (97.99%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLG+GRGRGRGREDGPGGRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149
           G+KA+SGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GSKASSGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of IVF0013041 vs. NCBI nr
Match: XP_011659113.1 (sm-like protein LSM4 [Cucumis sativus] >KGN44471.1 hypothetical protein Csa_016908 [Cucumis sativus])

HSP 1 Score: 290 bits (743), Expect = 7.78e-99
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPG RPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of IVF0013041 vs. NCBI nr
Match: XP_022926288.1 (sm-like protein LSM4 isoform X1 [Cucurbita moschata] >XP_022981642.1 sm-like protein LSM4 isoform X1 [Cucurbita maxima] >XP_022981643.1 sm-like protein LSM4 isoform X1 [Cucurbita maxima] >XP_023523329.1 sm-like protein LSM4 isoform X1 [Cucurbita pepo subsp. pepo] >KAG7037244.1 hypothetical protein SDJN02_00867 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 290 bits (742), Expect = 1.11e-98
Identity = 147/149 (98.66%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEETK+RADRKP GVGRGRGRGREDGPGGRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKTRADRKPPGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of IVF0013041 vs. TAIR 10
Match: AT5G27720.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 207.6 bits (527), Expect = 6.9e-54
Identity = 115/149 (77.18%), Postives = 119/149 (79.87%), Query Frame = 0


Query: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120
           IRGNTIKYLRVPDEVIDKVQEE K+R DRKP GVGRGRGRG +DG               
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGVDDG--------------- 120

Query: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 150
           GA+    GRG+G   GK G NR  GRGRG
Sbjct: 121 GAR----GRGRGTSMGKMGGNRGAGRGRG 129

[Close]

BLAST of IVF0013041 vs. TAIR 10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 68.9 bits (167), Expect = 3.8e-12
Identity = 48/138 (34.78%), Postives = 75/138 (54.35%), Query Frame = 0


Query: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
           +P+ LL  A GH + VELK+GE Y G ++ C+   N  L ++  T+KDG +  ++   +I
Sbjct: 7   IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDG-KVSQLEHVFI 66

Query: 62  RGNTIKYLRVPD-----EVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGR 121
           RG+ ++++ +PD      +  ++    K ++    LGVGRGRG  R     G+PA G GR
Sbjct: 67  RGSKVRFMVIPDILKHAPMFKRLDARIKGKS--SSLGVGRGRGAMR-----GKPAAGPGR 126

Query: 122 GFDDGAKAASGGRGKGGP 135
           G        +GGRG   P
Sbjct: 127 G--------TGGRGAVPP 128

[Close]

BLAST of IVF0013041 vs. TAIR 10
Match: AT1G76300.1 (snRNP core protein SMD3 )

HSP 1 Score: 65.1 bits (157), Expect = 5.5e-11
Identity = 44/134 (32.84%), Postives = 71/134 (52.99%), Query Frame = 0


Query: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61
           +P+ LL  + GH + VE+K+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 7   IPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFI 66

Query: 62  RGNTIKYLRVPDEVID-KVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 121
           RG+ +++L +PD + +  + ++ + +     LGVGRGRG           AKG GRG   
Sbjct: 67  RGSLVRFLVIPDMLKNAPMFKDVRGKGKSASLGVGRGRGAAMR-------AKGTGRG--- 125

Query: 122 GAKAASGGRGKGGP 135
                 GGRG   P
Sbjct: 127 ----TGGGRGAVPP 125

[Close]

BLAST of IVF0013041 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 56.2 bits (134), Expect = 2.6e-08
Identity = 40/101 (39.60%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 17  VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD--E 76
           +ELKNG   +G +   D  MN HL+ V  T K G     +    +RGN I+Y  +PD   
Sbjct: 17  IELKNGTIVHGTITGVDVSMNTHLKAVKLTLK-GKNPVTLDHLSVRGNNIRYYILPDSLN 76

Query: 77  VIDKVQEET------KSRADRKPLGVGRGRGRGREDGPGGR 110
           +   + E+T      K  A + P G GRGRGRGR  G GGR
Sbjct: 77  LETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRGGR 116

[Close]

BLAST of IVF0013041 vs. TAIR 10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 48.5 bits (114), Expect = 5.3e-06
Identity = 40/111 (36.04%), Postives = 53/111 (47.75%), Query Frame = 0


Query: 17  VELKNGETYNGHLVN----------CDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTI 76
           +ELKNG   +G + +           D  MN HL+ V  T K G     +    +RGN I
Sbjct: 17  IELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLK-GKNPVTLDHLSVRGNNI 76

Query: 77  KYLRVPD--EVIDKVQEET------KSRADRKPLGVGRGRGRGREDGPGGR 110
           +Y  +PD   +   + E+T      K  A + P G GRGRGRGR  G GGR
Sbjct: 77  RYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRGGR 126

The following BLAST results are available for this feature:

BLAST of IVF0013041 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43582	2.6e-58	82.00	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum OX=4097 P...	[more]
Q9LGE6	2.9e-57	82.12	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonic...	[more]
Q9ZRU9	2.5e-56	80.67	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica OX=28930 GN...	[more]
F4K4E3	9.7e-53	77.18	Sm-like protein LSM4 OS=Arabidopsis thaliana OX=3702 GN=LSM4 PE=1 SV=1	[more]
Q9QXA5	1.2e-39	64.29	U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus OX=10090 GN=Lsm4 PE=1 S...	[more]

BLAST of IVF0013041 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BYD6	1.3e-76	100.00	U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis melo OX=3656 GN=LOC103494929...	[more]
A0A6J1CRC5	8.5e-76	97.99	U6 snRNA-associated Sm-like protein LSm4 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A0A0K9I4	1.4e-75	99.33	U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3...	[more]
A0A0A0L3Q6	1.4e-75	99.33	U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3...	[more]
A0A6J1J2N4	1.9e-75	98.66	U6 snRNA-associated Sm-like protein LSm4 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]

BLAST of IVF0013041 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454536.1	3.30e-100	100.00	PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo] >XP_...	[more]
XP_011653886.2	2.71e-99	98.66	probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_03174055...	[more]
XP_022143617.1	3.86e-99	97.99	probable U6 snRNA-associated Sm-like protein LSm4 [Momordica charantia]	[more]
XP_011659113.1	7.78e-99	99.33	sm-like protein LSM4 [Cucumis sativus] >KGN44471.1 hypothetical protein Csa_0169...	[more]
XP_022926288.1	1.11e-98	98.66	sm-like protein LSM4 isoform X1 [Cucurbita moschata] >XP_022981642.1 sm-like pro...	[more]

BLAST of IVF0013041 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27720.1	6.9e-54	77.18	Small nuclear ribonucleoprotein family protein	[more]
AT1G20580.1	3.8e-12	34.78	Small nuclear ribonucleoprotein family protein	[more]
AT1G76300.1	5.5e-11	32.84	snRNP core protein SMD3	[more]
AT4G02840.1	2.6e-08	39.60	Small nuclear ribonucleoprotein family protein	[more]
AT4G02840.2	5.3e-06	36.04	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 5..71 e-value: 1.4E-20 score: 84.4
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 6..70 e-value: 6.9E-17 score: 60.9
None	No IPR available	GENE3D	2.30.30.100		coord: 1..83 e-value: 1.7E-37 score: 128.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..109
None	No IPR available	PANTHER	PTHR23338:SF42	SM-LIKE PROTEIN LSM4	coord: 1..137
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 1..137
IPR034101	Sm-like protein Lsm4	CDD	cd01723	LSm4	coord: 2..77 e-value: 1.34157E-61 score: 182.005
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 3..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013041.1	IVF0013041.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
biological_process	GO:0033962	P-body assembly
biological_process	GO:0000387	spliceosomal snRNP assembly
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0006396	RNA processing
cellular_component	GO:0000932	P-body
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0097526	spliceosomal tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0017070	U6 snRNA binding