IVF0012983 (gene) Melon (IVF77) v1

Overview


Name	IVF0012983
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr08: 30688342 .. 30688833 (+)
RNA-Seq Expression	IVF0012983
Synteny	IVF0012983

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTTATGCAACTCAGTACTAGTTAGTCTTCCCACATATTACCTATCTTTATTTTCAATACTTGAAAGTGTGGCTGCCTCCTTGGAGAGAATCATGCGTAATTTCTTTTGGGAAGGTCATGCTGGCAGCAAAATCAGCCACCTTGATAAATGGAACAAGGCTTCAACTCCTCTAAAAGATGGGGTTTTTGGCCTAGGAGGAATTAAAATTCATAACACTGCTTTGCTCGCTAAATGGGGTAGGAGATTCTCAAACGAAGAGTCAGCTCTTTGGAGGCAAATAATTAGAAGCATCCACGGTAAGGAGTCGTTTGATTGGTTCACTAAAGGGAAGTCCGGTAATAGCCTAAGGAGCCATTGGGTTAGCATTGCAAGAGTGTGGAGGTCGGTTGACTCATTAAACTCCTTTAAAATCTTGGTAACGACCGTAGAATTGGCTTTTGGTCAAATCCTTGGATTGGCAATGCCCCATCAAGGAGCAATATTCTAG

mRNA sequence

ATGTCCTTATGCAACTCAGTACTAGTTAGTCTTCCCACATATTACCTATCTTTATTTTCAATACTTGAAAGTGTGGCTGCCTCCTTGGAGAGAATCATGCGTAATTTCTTTTGGGAAGGTCATGCTGGCAGCAAAATCAGCCACCTTGATAAATGGAACAAGGCTTCAACTCCTCTAAAAGATGGGGTTTTTGGCCTAGGAGGAATTAAAATTCATAACACTGCTTTGCTCGCTAAATGGGGTAGGAGATTCTCAAACGAAGAGTCAGCTCTTTGGAGGCAAATAATTAGAAGCATCCACGGTAAGGAGTCGTTTGATTGGTTCACTAAAGGGAAGTCCGGTAATAGCCTAAGGAGCCATTGGGTTAGCATTGCAAGAGTGTGGAGGTCGGTTGACTCATTAAACTCCTTTAAAATCTTGGTAACGACCGTAGAATTGGCTTTTGGTCAAATCCTTGGATTGGCAATGCCCCATCAAGGAGCAATATTCTAG

Coding sequence (CDS)

ATGTCCTTATGCAACTCAGTACTAGTTAGTCTTCCCACATATTACCTATCTTTATTTTCAATACTTGAAAGTGTGGCTGCCTCCTTGGAGAGAATCATGCGTAATTTCTTTTGGGAAGGTCATGCTGGCAGCAAAATCAGCCACCTTGATAAATGGAACAAGGCTTCAACTCCTCTAAAAGATGGGGTTTTTGGCCTAGGAGGAATTAAAATTCATAACACTGCTTTGCTCGCTAAATGGGGTAGGAGATTCTCAAACGAAGAGTCAGCTCTTTGGAGGCAAATAATTAGAAGCATCCACGGTAAGGAGTCGTTTGATTGGTTCACTAAAGGGAAGTCCGGTAATAGCCTAAGGAGCCATTGGGTTAGCATTGCAAGAGTGTGGAGGTCGGTTGACTCATTAAACTCCTTTAAAATCTTGGTAACGACCGTAGAATTGGCTTTTGGTCAAATCCTTGGATTGGCAATGCCCCATCAAGGAGCAATATTCTAG

Protein sequence

MSLCNSVLVSLPTYYLSLFSILESVAASLERIMRNFFWEGHAGSKISHLDKWNKASTPLKDGVFGLGGIKIHNTALLAKWGRRFSNEESALWRQIIRSIHGKESFDWFTKGKSGNSLRSHWVSIARVWRSVDSLNSFKILVTTVELAFGQILGLAMPHQGAIF

Homology

[Close]

BLAST of IVF0012983 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.7e-11
Identity = 47/137 (34.31%), Postives = 71/137 (51.82%), Query Frame = 0


Query: 1   MSLCNSVLVSLPTYYLSLFSILESVAASLERIMRNFFWEGHAGSKISHLDKWNKASTPLK 60
           ++L  +VL S+P + +S   + +S+   L+++ R F W   A  K  HL KW+K  +P K
Sbjct: 38  LTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKK 97

Query: 61  DGVFGLGGIKIHNTALLAKWGRRFSNEESALWRQII-RSIHGKESFD--W-FTKGKSGNS 120
           +G  G+   K  N AL++K G R   E+++LW  ++ +  H  E  D  W   KG    S
Sbjct: 98  EGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYHVGEIRDSRWLIPKG----S 157

Query: 121 LRSHWVSIARVWRSVDS 134
             S W SIA   R V S
Sbjct: 158 WSSTWRSIAIGLRDVVS 170

[Close]

BLAST of IVF0012983 vs. ExPASy TrEMBL
Match: A0A5A7V5I1 (Cbl-interacting serinethreonine-protein kinase 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00780 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 9.0e-71
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 33  MRNFFWEGHAGSKISHLDKWNKASTPLKDGVFGLGGIKIHNTALLAKWGRRFSNEESALW 92
           MRNFFWEGHAGSKISHLDKWNKASTPLKDGVFGLGGIKIHNTALLAKWGRRFSNEESALW
Sbjct: 1   MRNFFWEGHAGSKISHLDKWNKASTPLKDGVFGLGGIKIHNTALLAKWGRRFSNEESALW 60

Query: 93  RQIIRSIHGKESFDWFTKGKSGNSLRSHWVSIARVWRSVDSLNSFKILVTTVELAFGQIL 152
           RQIIRSIHGKESFDWFTKGKSGNSLRSHWVSIARVWRSVDSLNSFKILVTTVELAFGQIL
Sbjct: 61  RQIIRSIHGKESFDWFTKGKSGNSLRSHWVSIARVWRSVDSLNSFKILVTTVELAFGQIL 120

Query: 153 GLAMPHQGAIF 164
           GLAMPHQGAIF
Sbjct: 121 GLAMPHQGAIF 131

[Close]

BLAST of IVF0012983 vs. ExPASy TrEMBL
Match: A0A5A7T2Y0 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00100 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.9e-41
Identity = 84/107 (78.50%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 33  MRNFFWEGHAGSKISHLDKWNKASTPLKDGVFGLGGIKIHNTALLAKWGRRFSNEESALW 92
           MRNFF EGHA SKI+ L  WNK S+P KDG  GLGGIKIHNTALLAKWG R+S EESALW
Sbjct: 1   MRNFFREGHADSKINQLVNWNKVSSPPKDGGLGLGGIKIHNTALLAKWGWRYSKEESALW 60

Query: 93  RQIIRSIHGKESFDWFTKGKSGNSLRSHWVSIARVWRSVDSLNSFKI 140
           RQ+IRSIHGKE+FDWFTKGKSGNSLRS WV+IAR WR VDSL SF +
Sbjct: 61  RQVIRSIHGKEAFDWFTKGKSGNSLRSPWVNIARFWRLVDSLASFNL 107

[Close]

BLAST of IVF0012983 vs. ExPASy TrEMBL
Match: A0A5D3DE60 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00090 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.9e-41
Identity = 84/107 (78.50%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 33  MRNFFWEGHAGSKISHLDKWNKASTPLKDGVFGLGGIKIHNTALLAKWGRRFSNEESALW 92
           MRNFF EGHA SKI+ L  WNK S+  KDG  GLGGIKIHNTALLAKWG R+S EESALW
Sbjct: 1   MRNFFREGHADSKINQLVNWNKVSSLPKDGGLGLGGIKIHNTALLAKWGWRYSKEESALW 60

Query: 93  RQIIRSIHGKESFDWFTKGKSGNSLRSHWVSIARVWRSVDSLNSFKI 140
           RQ+IRSIHGKE+FDWFTKGKSGNSLRSHWV+IAR WR VDSL SF +
Sbjct: 61  RQVIRSIHGKEAFDWFTKGKSGNSLRSHWVNIARFWRLVDSLASFNL 107

[Close]

BLAST of IVF0012983 vs. ExPASy TrEMBL
Match: A0A5D3BF26 (Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00080 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.7e-35
Identity = 81/137 (59.12%), Postives = 98/137 (71.53%), Query Frame = 0


Query: 3   LCNSVLVSLPTYYLSLFSILESVAASLERIMRNFFWEGHAGSKISHLDKWNKASTPLKDG 62
           LCN+VL SL TYYLS     +   + LE+I RNFFWEG +GSK++HL KWN  S  LK  
Sbjct: 97  LCNAVLTSLQTYYLS----HKMWQSPLEKITRNFFWEGSSGSKLNHLVKWNLVSLSLKGV 156

Query: 63  VFGLGGIKIHNTALLAKWGRRFSNEESALWRQIIRSIHGKESFDWFTKGKSGNSLRSHWV 122
             GLG +K HN+ALLAKWG RF+ E+ +  R+II SIHGKE FDWFT  K GNSLRS W 
Sbjct: 157 GLGLGALKTHNSALLAKWGWRFAMEDFSFGRKIICSIHGKEPFDWFTLEKFGNSLRSPWF 216

Query: 123 SIARVWRSVDSLNSFKI 140
           SI++VWRSV+SL   K+
Sbjct: 217 SISKVWRSVESLALTKL 229

[Close]

BLAST of IVF0012983 vs. ExPASy TrEMBL
Match: A0A5D3CSP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00990 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 3.3e-33
Identity = 69/122 (56.56%), Postives = 92/122 (75.41%), Query Frame = 0


Query: 18  LFSILESVAASLERIMRNFFWEGHAGSKISHLDKWNKASTPLKDGVFGLGGIKIHNTALL 77
           L +I E+VA +LE+++RNFFWEG++GSKI+H   W K ++ L DG  GLGGI+  + ALL
Sbjct: 14  LSAIPENVAFALEKLIRNFFWEGNSGSKINHFVSWKKVTSSLLDGRLGLGGIRNKSMALL 73

Query: 78  AKWGRRFSNEESALWRQIIRSIHGKESFDWFTKGKSGNSLRSHWVSIARVWRSVDSLNSF 137
           AKWG R+  E +ALWRQ++RSIHG+E+FDW T+ KS NSLRS WV I+R W  V+ L  F
Sbjct: 74  AKWGWRYMKENTALWRQVLRSIHGRETFDWRTQSKSRNSLRSPWVDISREWEKVEILAPF 133

Query: 138 KI 140
           K+
Sbjct: 134 KL 135

[Close]

BLAST of IVF0012983 vs. NCBI nr
Match: KAA0062490.1 (cbl-interacting serinethreonine-protein kinase 9 [Cucumis melo var. makuwa] >TYK27394.1 cbl-interacting serinethreonine-protein kinase 9 [Cucumis melo var. makuwa])

HSP 1 Score: 276 bits (707), Expect = 2.30e-93
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 33  MRNFFWEGHAGSKISHLDKWNKASTPLKDGVFGLGGIKIHNTALLAKWGRRFSNEESALW 92
           MRNFFWEGHAGSKISHLDKWNKASTPLKDGVFGLGGIKIHNTALLAKWGRRFSNEESALW
Sbjct: 1   MRNFFWEGHAGSKISHLDKWNKASTPLKDGVFGLGGIKIHNTALLAKWGRRFSNEESALW 60

Query: 93  RQIIRSIHGKESFDWFTKGKSGNSLRSHWVSIARVWRSVDSLNSFKILVTTVELAFGQIL 152
           RQIIRSIHGKESFDWFTKGKSGNSLRSHWVSIARVWRSVDSLNSFKILVTTVELAFGQIL
Sbjct: 61  RQIIRSIHGKESFDWFTKGKSGNSLRSHWVSIARVWRSVDSLNSFKILVTTVELAFGQIL 120

Query: 153 GLAMPHQGAIF 163
           GLAMPHQGAIF
Sbjct: 121 GLAMPHQGAIF 131

[Close]

BLAST of IVF0012983 vs. NCBI nr
Match: TYK21876.1 (hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 178 bits (452), Expect = 2.44e-51
Identity = 84/107 (78.50%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 33  MRNFFWEGHAGSKISHLDKWNKASTPLKDGVFGLGGIKIHNTALLAKWGRRFSNEESALW 92
           MRNFF EGHA SKI+ L  WNK S+  KDG  GLGGIKIHNTALLAKWG R+S EESALW
Sbjct: 1   MRNFFREGHADSKINQLVNWNKVSSLPKDGGLGLGGIKIHNTALLAKWGWRYSKEESALW 60

Query: 93  RQIIRSIHGKESFDWFTKGKSGNSLRSHWVSIARVWRSVDSLNSFKI 139
           RQ+IRSIHGKE+FDWFTKGKSGNSLRSHWV+IAR WR VDSL SF +
Sbjct: 61  RQVIRSIHGKEAFDWFTKGKSGNSLRSHWVNIARFWRLVDSLASFNL 107

[Close]

BLAST of IVF0012983 vs. NCBI nr
Match: KAA0035739.1 (hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 178 bits (452), Expect = 8.41e-51
Identity = 84/107 (78.50%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 33  MRNFFWEGHAGSKISHLDKWNKASTPLKDGVFGLGGIKIHNTALLAKWGRRFSNEESALW 92
           MRNFF EGHA SKI+ L  WNK S+P KDG  GLGGIKIHNTALLAKWG R+S EESALW
Sbjct: 1   MRNFFREGHADSKINQLVNWNKVSSPPKDGGLGLGGIKIHNTALLAKWGWRYSKEESALW 60

Query: 93  RQIIRSIHGKESFDWFTKGKSGNSLRSHWVSIARVWRSVDSLNSFKI 139
           RQ+IRSIHGKE+FDWFTKGKSGNSLRS WV+IAR WR VDSL SF +
Sbjct: 61  RQVIRSIHGKEAFDWFTKGKSGNSLRSPWVNIARFWRLVDSLASFNL 107

[Close]

BLAST of IVF0012983 vs. NCBI nr
Match: XP_038880332.1 (uncharacterized protein LOC120071973 [Benincasa hispida])

HSP 1 Score: 154 bits (390), Expect = 2.31e-42
Identity = 73/149 (48.99%), Postives = 98/149 (65.77%), Query Frame = 0


Query: 2   SLCNSVLVSLPTYYLSLFSILESVAASLERIMRNFFWEGHAGSKISHLDKWNKASTPLKD 61
           +LC SV  +LPTYYLSLF + E V   +ER M+NFFWEGH G KI+HL KW   +   +D
Sbjct: 204 TLCKSVHSNLPTYYLSLFLLPEKVLGIMERTMKNFFWEGHKGGKINHLVKWELVTKAQED 263

Query: 62  GVFGLGGIKIHNTALLAKWGRRFSNEESALWRQIIRSIHGKESFDWFTKGKSGNSLRSHW 121
           G  GLGG++  N A LAKWG R  + E+ LW ++++SIH ++ FDW T GK   +LRS W
Sbjct: 264 GGLGLGGLRARNLAFLAKWGWRLLHNENTLWSKVVKSIHRRDMFDWHTSGKVSLNLRSSW 323

Query: 122 VSIARVWRSVDSLNSFKILVTTVELAFGQ 150
           +SI+R W  V++L  +K L     +AFG 
Sbjct: 324 ISISRSWLKVEALAVYK-LGNGSRIAFGS 351

[Close]

BLAST of IVF0012983 vs. NCBI nr
Match: TYJ97221.1 (putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 158 bits (399), Expect = 2.84e-41
Identity = 81/137 (59.12%), Postives = 98/137 (71.53%), Query Frame = 0


Query: 3   LCNSVLVSLPTYYLSLFSILESVAASLERIMRNFFWEGHAGSKISHLDKWNKASTPLKDG 62
           LCN+VL SL TYYLS     +   + LE+I RNFFWEG +GSK++HL KWN  S  LK  
Sbjct: 97  LCNAVLTSLQTYYLSH----KMWQSPLEKITRNFFWEGSSGSKLNHLVKWNLVSLSLKGV 156

Query: 63  VFGLGGIKIHNTALLAKWGRRFSNEESALWRQIIRSIHGKESFDWFTKGKSGNSLRSHWV 122
             GLG +K HN+ALLAKWG RF+ E+ +  R+II SIHGKE FDWFT  K GNSLRS W 
Sbjct: 157 GLGLGALKTHNSALLAKWGWRFAMEDFSFGRKIICSIHGKEPFDWFTLEKFGNSLRSPWF 216

Query: 123 SIARVWRSVDSLNSFKI 139
           SI++VWRSV+SL   K+
Sbjct: 217 SISKVWRSVESLALTKL 229

The following BLAST results are available for this feature:

BLAST of IVF0012983 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	7.7e-11	34.31	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of IVF0012983 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5I1	9.0e-71	100.00	Cbl-interacting serinethreonine-protein kinase 9 OS=Cucumis melo var. makuwa OX=...	[more]
A0A5A7T2Y0	1.9e-41	78.50	zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3DE60	1.9e-41	78.50	zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5D3BF26	2.7e-35	59.12	Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. ...	[more]
A0A5D3CSP2	3.3e-33	56.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0012983 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062490.1	2.30e-93	100.00	cbl-interacting serinethreonine-protein kinase 9 [Cucumis melo var. makuwa] >TYK...	[more]
TYK21876.1	2.44e-51	78.50	hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa]	[more]
KAA0035739.1	8.41e-51	78.50	hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa]	[more]
XP_038880332.1	2.31e-42	48.99	uncharacterized protein LOC120071973 [Benincasa hispida]	[more]
TYJ97221.1	2.84e-41	59.12	putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. ma...	[more]

BLAST of IVF0012983 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33116:SF33	OS01G0885550 PROTEIN	coord: 3..131
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 3..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012983.1	IVF0012983.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0016020	membrane
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0035639	purine ribonucleoside triphosphate binding
molecular_function	GO:0032555	purine ribonucleotide binding