IVF0012980 (gene) Melon (IVF77) v1

Overview


Name	IVF0012980
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	transcription factor PAR1-like
Location	chr10: 2986371 .. 2986985 (+)
RNA-Seq Expression	IVF0012980
Synteny	IVF0012980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTATTTTCTCCCAACACTTTTCTTAATTACCTTTATTCTTTTATAAATTTTGTTACATCATTTTCTGATCTCCTTAATTATTTTAATTGAAAATGGAACGATATTATAGTATTTGTGAGAGCAACGGAATTGGAAAGGTGAGGTGGCAGAGGAGAGGGAGGCGCGGGGGACGGCACGGCGGCGGCGGGGGTGGTGGTGGTTCCGTCCATATGAAGATGAGAAAGCTGCAGCGGCTGATCCCCGGAGGACGGAGGCTGAAACCGGACCGGTTGTTCTTGAAAACGGCGGATTATATAATGCAATTGAGGTCTCAAGTTCATGTTTTACAAGCACTTTCCAAGATTTATGACCCTACACTTTCTAATTAGTGATATAAATCTCTATTATTATTATTTTTTTTCCTTTTTCTTTTAATTTTTTTTTCCTTCTTTTTATAATTTTTTATGTTTTTTTTTAAGTCTTGTATCCAGAAAAAAAGAAGAAGAGAAAAATTAATTGGCTTTTTTGGCCACCTCTATATGACATACATACACATTATTATTAAATATCTATATGTTTTGTGTGTGTGTGGGATGATGTATG

mRNA sequence

TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTATTTTCTCCCAACACTTTTCTTAATTACCTTTATTCTTTTATAAATTTTGTTACATCATTTTCTGATCTCCTTAATTATTTTAATTGAAAATGGAACGATATTATAGTATTTGTGAGAGCAACGGAATTGGAAAGGTGAGGTGGCAGAGGAGAGGGAGGCGCGGGGGACGGCACGGCGGCGGCGGGGGTGGTGGTGGTTCCGTCCATATGAAGATGAGAAAGCTGCAGCGGCTGATCCCCGGAGGACGGAGGCTGAAACCGGACCGGTTGTTCTTGAAAACGGCGGATTATATAATGCAATTGAGGTCTCAAGTTCATGTTTTACAAGCACTTTCCAAGATTTATGACCCTACACTTTCTAATTAGTGATATAAATCTCTATTATTATTATTTTTTTTCCTTTTTCTTTTAATTTTTTTTTCCTTCTTTTTATAATTTTTTATGTTTTTTTTTAAGTCTTGTATCCAGAAAAAAAGAAGAAGAGAAAAATTAATTGGCTTTTTTGGCCACCTCTATATGACATACATACACATTATTATTAAATATCTATATGTTTTGTGTGTGTGTGGGATGATGTATG

Coding sequence (CDS)

ATGGAACGATATTATAGTATTTGTGAGAGCAACGGAATTGGAAAGGTGAGGTGGCAGAGGAGAGGGAGGCGCGGGGGACGGCACGGCGGCGGCGGGGGTGGTGGTGGTTCCGTCCATATGAAGATGAGAAAGCTGCAGCGGCTGATCCCCGGAGGACGGAGGCTGAAACCGGACCGGTTGTTCTTGAAAACGGCGGATTATATAATGCAATTGAGGTCTCAAGTTCATGTTTTACAAGCACTTTCCAAGATTTATGACCCTACACTTTCTAATTAG

Protein sequence

MERYYSICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPTLSN

Homology

[Close]

BLAST of IVF0012980 vs. ExPASy TrEMBL
Match: A0A1S3BFE3 (uncharacterized protein LOC103489026 OS=Cucumis melo OX=3656 GN=LOC103489026 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 5.8e-43
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MERYYSICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRL 60
          MERYYSICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRL
Sbjct: 1  MERYYSICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRL 60

Query: 61 FLKTADYIMQLRSQVHVLQALSKIYDPTLSN 92
          FLKTADYIMQLRSQVHVLQALSKIYDPTLSN
Sbjct: 61 FLKTADYIMQLRSQVHVLQALSKIYDPTLSN 91

[Close]

BLAST of IVF0012980 vs. ExPASy TrEMBL
Match: A0A0A0KQB4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G602220 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.6e-38
Identity = 84/91 (92.31%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 1  MERYYSICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRL 60
          M++YY  CES GIGKVRWQRRGRRGGRH  GGGGGGSVHMKMRKLQRLIPGGRRLKPDRL
Sbjct: 1  MDQYYDTCESKGIGKVRWQRRGRRGGRH--GGGGGGSVHMKMRKLQRLIPGGRRLKPDRL 60

Query: 61 FLKTADYIMQLRSQVHVLQALSKIYDPTLSN 92
          FLKTADYIMQLRSQVHVLQALSKIYDPTLSN
Sbjct: 61 FLKTADYIMQLRSQVHVLQALSKIYDPTLSN 89

[Close]

BLAST of IVF0012980 vs. ExPASy TrEMBL
Match: A0A6J1IR24 (uncharacterized protein LOC111477674 OS=Cucurbita maxima OX=3661 GN=LOC111477674 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.2e-29
Identity = 72/87 (82.76%), Postives = 75/87 (86.21%), Query Frame = 0


Query: 4  YYSICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLK 63
          YY+  E+ GI KV+WQRRGRRGG H    GG  SVHMKMRKLQRLIPGGRRLKPDRLFLK
Sbjct: 3  YYNCDEAKGIAKVKWQRRGRRGGLH----GGSSSVHMKMRKLQRLIPGGRRLKPDRLFLK 62

Query: 64 TADYIMQLRSQVHVLQALSKIYDPTLS 91
          TADYIMQLRSQVHVLQALSKIYDP LS
Sbjct: 63 TADYIMQLRSQVHVLQALSKIYDPRLS 85

[Close]

BLAST of IVF0012980 vs. ExPASy TrEMBL
Match: A0A6J1GYH6 (transcription factor PAR2-like OS=Cucurbita moschata OX=3662 GN=LOC111458642 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.8e-29
Identity = 70/87 (80.46%), Postives = 75/87 (86.21%), Query Frame = 0


Query: 4  YYSICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLK 63
          YY+  E+ GI KV+WQRRGRRGGRH     GG SVHMK+RKLQR+IPGGRRLKPDRLFLK
Sbjct: 3  YYNCDETRGIAKVKWQRRGRRGGRH-----GGASVHMKLRKLQRIIPGGRRLKPDRLFLK 62

Query: 64 TADYIMQLRSQVHVLQALSKIYDPTLS 91
          TADYIMQLRSQVHVL ALSKIYDP LS
Sbjct: 63 TADYIMQLRSQVHVLNALSKIYDPQLS 84

[Close]

BLAST of IVF0012980 vs. ExPASy TrEMBL
Match: A0A6J1DDZ5 (transcription factor PAR2 OS=Momordica charantia OX=3673 GN=LOC111019200 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.6e-27
Identity = 70/90 (77.78%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 4  YYSICESN----GIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDR 63
          YY +  ++    GIGKV+WQRRGRRGGRH     GGGSV MKMRKLQRLIPGGR LKPDR
Sbjct: 3  YYCVSSTDAKGIGIGKVKWQRRGRRGGRH-----GGGSVQMKMRKLQRLIPGGRGLKPDR 62

Query: 64 LFLKTADYIMQLRSQVHVLQALSKIYDPTL 90
          LFLKTADYIMQLRSQV+VLQALSKIY+PTL
Sbjct: 63 LFLKTADYIMQLRSQVNVLQALSKIYEPTL 87

[Close]

BLAST of IVF0012980 vs. NCBI nr
Match: XP_008446236.1 (PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo])

HSP 1 Score: 179 bits (455), Expect = 9.13e-57
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MERYYSICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRL 60
          MERYYSICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRL
Sbjct: 1  MERYYSICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRL 60

Query: 61 FLKTADYIMQLRSQVHVLQALSKIYDPTLSN 91
          FLKTADYIMQLRSQVHVLQALSKIYDPTLSN
Sbjct: 61 FLKTADYIMQLRSQVHVLQALSKIYDPTLSN 91

[Close]

BLAST of IVF0012980 vs. NCBI nr
Match: XP_011655641.1 (uncharacterized protein LOC105435564 [Cucumis sativus] >KGN51823.1 hypothetical protein Csa_009022 [Cucumis sativus])

HSP 1 Score: 163 bits (412), Expect = 3.22e-50
Identity = 84/91 (92.31%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 1  MERYYSICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRL 60
          M++YY  CES GIGKVRWQRRGRRGGRHGGGGGG  SVHMKMRKLQRLIPGGRRLKPDRL
Sbjct: 1  MDQYYDTCESKGIGKVRWQRRGRRGGRHGGGGGG--SVHMKMRKLQRLIPGGRRLKPDRL 60

Query: 61 FLKTADYIMQLRSQVHVLQALSKIYDPTLSN 91
          FLKTADYIMQLRSQVHVLQALSKIYDPTLSN
Sbjct: 61 FLKTADYIMQLRSQVHVLQALSKIYDPTLSN 89

[Close]

BLAST of IVF0012980 vs. NCBI nr
Match: XP_023513052.1 (transcription factor PAR2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143 bits (361), Expect = 1.77e-42
Identity = 75/87 (86.21%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 4  YYSICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLK 63
          YY+  E+ GI KV+WQRRGRRGGRHGGGGG   SVHMK+RKLQRLIPGGRRLKPDRLFLK
Sbjct: 3  YYNCDETRGIAKVKWQRRGRRGGRHGGGGGS--SVHMKLRKLQRLIPGGRRLKPDRLFLK 62

Query: 64 TADYIMQLRSQVHVLQALSKIYDPTLS 90
          TADYIMQLRSQVHVLQALSKIYDP LS
Sbjct: 63 TADYIMQLRSQVHVLQALSKIYDPQLS 87

[Close]

BLAST of IVF0012980 vs. NCBI nr
Match: KAG7032147.1 (hypothetical protein SDJN02_06190, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143 bits (360), Expect = 2.60e-42
Identity = 75/87 (86.21%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 4  YYSICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLK 63
          YY+  E+ GI KV+WQRRGRRGGRHGGGGG   SVHMK+RKLQRLIPGGRRLKPDRLFLK
Sbjct: 3  YYNCDETRGIAKVKWQRRGRRGGRHGGGGGSS-SVHMKLRKLQRLIPGGRRLKPDRLFLK 62

Query: 64 TADYIMQLRSQVHVLQALSKIYDPTLS 90
          TADYIMQLRSQVHVLQALSKIYDP LS
Sbjct: 63 TADYIMQLRSQVHVLQALSKIYDPQLS 88

[Close]

BLAST of IVF0012980 vs. NCBI nr
Match: KAG6601364.1 (hypothetical protein SDJN03_06597, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140 bits (353), Expect = 3.04e-41
Identity = 74/87 (85.06%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 4  YYSICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLK 63
          YY+  E+ GI KV+WQRRGRRGGRHGGG G   SVHMK+RKLQRLIPGGRRLKPDRLFLK
Sbjct: 3  YYNCDETRGIAKVKWQRRGRRGGRHGGGDGSS-SVHMKLRKLQRLIPGGRRLKPDRLFLK 62

Query: 64 TADYIMQLRSQVHVLQALSKIYDPTLS 90
          TADYIMQLRSQVHVLQALSKIYDP LS
Sbjct: 63 TADYIMQLRSQVHVLQALSKIYDPQLS 88

[Close]

BLAST of IVF0012980 vs. TAIR 10
Match: AT1G23965.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70270.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 2.2e-10
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 30  GGGGGGGSVHMKMRKLQRLIPGGRRL-KPDRLFLKTADYIMQLRSQVHVLQALSKIY 86
           G G G GS+ +KMRKL+ LIPGGRRL +PD L  KTADYIM L  ++  L+A+S IY
Sbjct: 58  GRGSGSGSIQIKMRKLRVLIPGGRRLNQPDLLLTKTADYIMHLELRIRFLKAISDIY 114

[Close]

BLAST of IVF0012980 vs. TAIR 10
Match: AT1G70270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23965.1); Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 7.3e-06
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 30 GGGGGGGSVHMKMRKLQRLIPGGRRLK-PDRLFLKTADYIMQLRSQVHVLQALSKIY 86
          G G   G + MK+R+LQ LIPGG+    PD L  KT DYI+ L+ ++  L+A+S++Y
Sbjct: 28 GSGSRSGLLQMKVRRLQILIPGGQTCNHPDLLLSKTVDYIVHLKLKLRFLKAISEMY 84

[Close]

BLAST of IVF0012980 vs. TAIR 10
Match: AT2G42870.1 (phy rapidly regulated 1 )

HSP 1 Score: 41.6 bits (96), Expect = 4.0e-04
Identity = 20/45 (44.44%), Postives = 29/45 (64.44%), Query Frame = 0


Query: 38  VHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALS 83
           V  K+  LQR+IPGG  L  D LF +TA YI+ L+ Q+  ++ L+
Sbjct: 59  VKEKIEALQRIIPGGAALGVDALFEETAGYILSLQCQIKTIKVLT 103

The following BLAST results are available for this feature:

BLAST of IVF0012980 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BFE3	5.8e-43	100.00	uncharacterized protein LOC103489026 OS=Cucumis melo OX=3656 GN=LOC103489026 PE=...	[more]
A0A0A0KQB4	5.6e-38	92.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G602220 PE=4 SV=1	[more]
A0A6J1IR24	1.2e-29	82.76	uncharacterized protein LOC111477674 OS=Cucurbita maxima OX=3661 GN=LOC111477674...	[more]
A0A6J1GYH6	2.8e-29	80.46	transcription factor PAR2-like OS=Cucurbita moschata OX=3662 GN=LOC111458642 PE=...	[more]
A0A6J1DDZ5	2.6e-27	77.78	transcription factor PAR2 OS=Momordica charantia OX=3673 GN=LOC111019200 PE=4 SV...	[more]

BLAST of IVF0012980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446236.1	9.13e-57	100.00	PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo]	[more]
XP_011655641.1	3.22e-50	92.31	uncharacterized protein LOC105435564 [Cucumis sativus] >KGN51823.1 hypothetical ...	[more]
XP_023513052.1	1.77e-42	86.21	transcription factor PAR2-like [Cucurbita pepo subsp. pepo]	[more]
KAG7032147.1	2.60e-42	86.21	hypothetical protein SDJN02_06190, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6601364.1	3.04e-41	85.06	hypothetical protein SDJN03_06597, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of IVF0012980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23965.1	2.2e-10	59.65	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G70270.1	7.3e-06	45.61	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G42870.1	4.0e-04	44.44	phy rapidly regulated 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..40
None	No IPR available	PANTHER	PTHR33124:SF9	TRANSCRIPTION FACTOR	coord: 11..86
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 11..86
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 37..81 e-value: 4.075E-13 score: 56.4768

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012980.1	IVF0012980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated