IVF0012857 (gene) Melon (IVF77) v1

Overview


Name	IVF0012857
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	U6 snRNA-associated Sm-like protein LSm8
Location	chr12: 24081047 .. 24084069 (+)
RNA-Seq Expression	IVF0012857
Synteny	IVF0012857

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCAGCTTTTCCTTTCAGCAGCTCAGTATCGCCGCCGTCTTTCTTCCGCTCGTACCGGCGGCGTTTTCTTCAGCTTGTCCTGCCGCAGCCTTCCTTTTGTTGTATTGATTTTCCACTCTCTCGTGTTACTGTTAGAGGTATGCTAAAAAACTCCCCATGTCTTTTCTTCTCCTTTGAAAACTCAAATTAGAATTGTCTAATGGAAGAAAGACGAGCGGTTTTGATGTTTATTGTTATTTGTGATTATTTTATAACATCAGCATGATAGCAACGAAAATGAAAACCGTTGTGGCAAATTGGAAGTTTTCGAACTGTTGAGGTTTTGATCTTCTTTGTATCTTTTATGTAGAATCGTTGAAGTAATCTATCGTGTCATCCAATGCTCTTTTGATCCCTAGCATGTAGGAGTTTTTTTGATTGACAGAACAACTTCAACCATATATATGTTGGTAGATTATAGACCTATAGTAGTAACACTTAATCTCTTTAGAAAATTGGAATTTCCAATTTAAATTTTGCTGGAATTACGATCTTTATATTATGCTTTGTAGTTCGTTTAAGTGATTTAAAGAATTCACTTGCAGCCGCAGGCGTGAAATTGGAAAAGATCGAGGCTAGTTCATTTCTGGTAGGGAAATTGCTACTTCTTGACGTGTTGTTCTGTTCGTTCTTCTTTTCCTACTGTGTTCCGCCATTCCCCCTTGCAACTTCAGATATTTACGTTGAAATTAAGCTTTAAGTATTGCTGTATAAGTATGAAACCTGCTTCCTGAACAGCTTATAACGCTTCTTTTTCTTCTTCTGGGACTAACTTCTGACCTATGGTGTCTTCTTTTCCTTTGTTGTTTTGGGCAGAATCTAGCCGAGGTGATAATATAGAATAGCTCCCGGTTGCTTATCTTAAGGTCTTCATTATGGCAAGTGGACCTGGACTTGATTCTCTGGTTGATCGTAAGTAATTTTATTTACAATCTCTCACACTGTTTGTTTTTATACATATATCAGTCTGTGTAATTGATCGGACGAGGATGTTACTGAACTCTTGAGGTGTGGAAGTTGAATAGATTGTCCTCTTTTGAGCTGGTTATGAATTGCTTTAGGCTATTCAAAAGAACATGCTATACTTTGTTGAGGATATATATGGATTTCTCCTCTTATTGCTGACTGGTTTTAAGATGAAATCGTTCTTACTCTTCTCGCTTGATTGCACTAAAACCATCCTCTTAACTTTTTTTTTAGAAACAATATCAGTCATCACAAACGACGGCCGCAATATCGTGGTATGGTTATGAGCTATCATCTAGTTAACTGATATTTCATCCACCCAATTTGTGTTTAAATTAACAATACTTTATGCAGGGAGTCTTGAAAGGGTTTGACCAGGCTACAAATATTATTCTTGATGAATCTCATGAACGTGTTTACTCAACCAAGGTTTGTACAATAACCGTTGTTAACTAAGATGGAATTTTGTACTTTCTATTGCTCTTCCACCGACTCTTAGTTTAGAGAGAGAATTCTTTCAATATGTAAAAATAATTTATATAATTGACTGTTATTACACCTTAGTTGATGCATTTGTATTCTGCTGGTTTGAACAAAAAGTTTCATACTTAACTGATTGTCATTTGAAATTTTTTGTTTACATTTTAAGCTAGAAAACAGGATCCTACATAGGTTAAATAATGTGATTCGATCTGCTAAAAAATCAAATGAAATGTGAGGAGGAGTAGAAGCAATAAGGGGATAGTATGATGATTAAGAACTGGTAGTTCTATACTTTCAATTGTTCATACTTTAAAGTATACATGAATTTACTCCTTAGCTTAATTCTGCCTTCATGCTGAGTTAAATTTACTCCTTCAAAAGCATGCCCTAGTTTGCTTACTCTATTCTATGCAAATGGGTAGTATTTCATCTAGTTTTCATTTCTGATTTTATCTTGTTTTTCAATTATTCACCATGTAGGCCTTTGTTTTGGGAAACTGATTAATTCTATGACTATATTTATATAGTTTTGTTCATCAGTTCCATAGTTCAAATAACAACTACTAGCATTTTCATATATGGATCAGAATTTTACATTCAGACGGAAATGTTTGTACCCATTAGTTTTATTATGTGAACGGATAAATTTTCATTTGATTTGTTGGATCCTTGAACTTTCTGATGCAATGGCTTTCAAGGGATTTAAGACTACATTTTCCCTTTGAATTAACTCAATACTTACTCTTGATCTGCAGGAAGGCGTTCAACAACTTGTTTTGGGTCTATATATAATCAGAGGGGACAATATGTAACTCCCATCTCACTTTTTCTTCTCGTCTTTTTTTCTTTTTCTTTTTAATTCTCAACCAAGAGGTTAGAGGTTGAAATACCTCCTCTCCTACAAGCATATCGTATAATCGAGAAGAAAAGAATCATAAAAAACATGATCAACTAAACTACTTTAAAATTACATTTCTTTTTCCTAATTTCATTCGGCGTATTTTACTTTATGGTCTACATTTTTTACCATTAAAGCTCTAGAATCTGAATAGTGATGATGATAATGTGATGTTTATTCCCTCAATTTTTTTAATATTAGAAACTTAAATTGTTTGGAAACTCATAAATTAAAGTTGTTAATTTTCTGCAGAAGCATTGTTGGGGAGCTAGACGAGGAACTTGATTCTAATCTGGACTTGTCCAAATTGAGAGCTCATCCTCTCAAACCTGTGATCCATTAATTATTGGAGCCGGAAGCTATGAATTTGTGTTTATTATGAGAAGCTTCCATTAAACAAGTCAAGCTGTTATCCATTCTTTTTTTGGCTTTAACCTCTTTCACCACCTTTGACAGCTTTGCTTAGATAGTGAGTATTATTTGATGCTTATGGATATTATTAAATATTTGAAATTTAAATACTTGAGATATTTATTATTTGTGGTTGAATATTCTGGTACAGTTAGGTAGTTGTTCAAATAATGATTCAGTGATCGAGTCTTAGTTTCTAATACTAAAGCTTTAATTATTGACAAA

mRNA sequence

CCCCAGCTTTTCCTTTCAGCAGCTCAGTATCGCCGCCGTCTTTCTTCCGCTCGTACCGGCGGCGTTTTCTTCAGCTTGTCCTGCCGCAGCCTTCCTTTTGTTGTATTGATTTTCCACTCTCTCGTGTTACTGTTAGAGCCGCAGGCGTGAAATTGGAAAAGATCGAGGCTAGTTCATTTCTGAATCTAGCCGAGGTGATAATATAGAATAGCTCCCGGTTGCTTATCTTAAGGTCTTCATTATGGCAAGTGGACCTGGACTTGATTCTCTGGTTGATCAAACAATATCAGTCATCACAAACGACGGCCGCAATATCGTGGGAGTCTTGAAAGGGTTTGACCAGGCTACAAATATTATTCTTGATGAATCTCATGAACGTGTTTACTCAACCAAGGAAGGCGTTCAACAACTTGTTTTGGGTCTATATATAATCAGAGGGGACAATATAAGCATTGTTGGGGAGCTAGACGAGGAACTTGATTCTAATCTGGACTTGTCCAAATTGAGAGCTCATCCTCTCAAACCTGTGATCCATTAATTATTGGAGCCGGAAGCTATGAATTTGTGTTTATTATGAGAAGCTTCCATTAAACAAGTCAAGCTGTTATCCATTCTTTTTTTGGCTTTAACCTCTTTCACCACCTTTGACAGCTTTGCTTAGATAGTGAGTATTATTTGATGCTTATGGATATTATTAAATATTTGAAATTTAAATACTTGAGATATTTATTATTTGTGGTTGAATATTCTGGTACAGTTAGGTAGTTGTTCAAATAATGATTCAGTGATCGAGTCTTAGTTTCTAATACTAAAGCTTTAATTATTGACAAA

Coding sequence (CDS)

ATGGCAAGTGGACCTGGACTTGATTCTCTGGTTGATCAAACAATATCAGTCATCACAAACGACGGCCGCAATATCGTGGGAGTCTTGAAAGGGTTTGACCAGGCTACAAATATTATTCTTGATGAATCTCATGAACGTGTTTACTCAACCAAGGAAGGCGTTCAACAACTTGTTTTGGGTCTATATATAATCAGAGGGGACAATATAAGCATTGTTGGGGAGCTAGACGAGGAACTTGATTCTAATCTGGACTTGTCCAAATTGAGAGCTCATCCTCTCAAACCTGTGATCCATTAA

Protein sequence

MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH

Homology

[Close]

BLAST of IVF0012857 vs. ExPASy Swiss-Prot
Match: Q8VYI0 (Sm-like protein LSM8 OS=Arabidopsis thaliana OX=3702 GN=LSM8 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 3.9e-42
Identity = 83/98 (84.69%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MA+  GL++LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ VLG
Sbjct: 1  MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNI ++GELDEELD++LD SKLRAHPLKPV+H
Sbjct: 61 LYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98

[Close]

BLAST of IVF0012857 vs. ExPASy Swiss-Prot
Match: Q3ZCE0 (U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=9913 GN=LSM8 PE=3 SV=3)

HSP 1 Score: 131.0 bits (328), Expect = 7.6e-30
Identity = 57/92 (61.96%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 7  LDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          L++ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of IVF0012857 vs. ExPASy Swiss-Prot
Match: O95777 (U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens OX=9606 GN=LSM8 PE=1 SV=3)

HSP 1 Score: 131.0 bits (328), Expect = 7.6e-30
Identity = 57/92 (61.96%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 7  LDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          L++ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of IVF0012857 vs. ExPASy Swiss-Prot
Match: Q6ZWM4 (U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus OX=10090 GN=Lsm8 PE=1 SV=3)

HSP 1 Score: 131.0 bits (328), Expect = 7.6e-30
Identity = 57/92 (61.96%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 7  LDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          L++ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of IVF0012857 vs. ExPASy Swiss-Prot
Match: Q5RCP3 (U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii OX=9601 GN=LSM8 PE=3 SV=3)

HSP 1 Score: 131.0 bits (328), Expect = 7.6e-30
Identity = 57/92 (61.96%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 7  LDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          L++ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of IVF0012857 vs. ExPASy TrEMBL
Match: A0A1S3ATI1 (U6 snRNA-associated Sm-like protein LSm8 OS=Cucumis melo OX=3656 GN=LOC103482675 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 9.3e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of IVF0012857 vs. ExPASy TrEMBL
Match: A0A0A0LT86 (U6 snRNA-associated Sm-like protein LSm8 OS=Cucumis sativus OX=3659 GN=LSM8 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 9.3e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of IVF0012857 vs. ExPASy TrEMBL
Match: A0A6J1K221 (U6 snRNA-associated Sm-like protein LSm8 OS=Cucurbita maxima OX=3661 GN=LOC111490340 PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.7e-46
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MASGPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of IVF0012857 vs. ExPASy TrEMBL
Match: A0A6J1GT46 (U6 snRNA-associated Sm-like protein LSm8 OS=Cucurbita moschata OX=3662 GN=LOC111457194 PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.7e-46
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MASGPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of IVF0012857 vs. ExPASy TrEMBL
Match: A0A6J1DPC5 (U6 snRNA-associated Sm-like protein LSm8 OS=Momordica charantia OX=3673 GN=LOC111022273 PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.7e-46
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MASGPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of IVF0012857 vs. NCBI nr
Match: XP_004137538.1 (sm-like protein LSM8 [Cucumis sativus] >XP_008437171.1 PREDICTED: sm-like protein LSM8 [Cucumis melo] >XP_008437187.1 PREDICTED: sm-like protein LSM8 [Cucumis melo] >XP_016901717.1 PREDICTED: sm-like protein LSM8 [Cucumis melo] >XP_031736453.1 sm-like protein LSM8 [Cucumis sativus] >XP_031736454.1 sm-like protein LSM8 [Cucumis sativus] >KGN64224.1 hypothetical protein Csa_014109 [Cucumis sativus])

HSP 1 Score: 194 bits (492), Expect = 3.43e-62
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of IVF0012857 vs. NCBI nr
Match: XP_022155134.1 (sm-like protein LSM8 [Momordica charantia] >XP_022955136.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955137.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955138.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955139.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955140.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022994688.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994689.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994690.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994691.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994692.1 sm-like protein LSM8 [Cucurbita maxima] >XP_023541242.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541244.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541245.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541246.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_038893733.1 sm-like protein LSM8 isoform X1 [Benincasa hispida] >XP_038893734.1 sm-like protein LSM8 isoform X1 [Benincasa hispida] >XP_038893735.1 sm-like protein LSM8 isoform X1 [Benincasa hispida] >KAG6573000.1 Sm-like protein LSM8, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012184.1 Sm-like protein LSM8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 192 bits (488), Expect = 1.40e-61
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MASGPGL+SLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of IVF0012857 vs. NCBI nr
Match: XP_031403511.1 (sm-like protein LSM8 [Punica granatum] >OWM62698.1 hypothetical protein CDL15_Pgr019992 [Punica granatum])

HSP 1 Score: 191 bits (485), Expect = 4.01e-61
Identity = 95/98 (96.94%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98
          LYIIRGDNIS+VGELDEELDS+LDLSKLRAHPLKPV+H
Sbjct: 61 LYIIRGDNISVVGELDEELDSSLDLSKLRAHPLKPVVH 98

[Close]

BLAST of IVF0012857 vs. NCBI nr
Match: XP_042494798.1 (sm-like protein LSM8 [Macadamia integrifolia] >XP_042494806.1 sm-like protein LSM8 [Macadamia integrifolia] >XP_042494814.1 sm-like protein LSM8 [Macadamia integrifolia] >XP_042494822.1 sm-like protein LSM8 [Macadamia integrifolia])

HSP 1 Score: 191 bits (484), Expect = 5.70e-61
Identity = 95/98 (96.94%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M+SGPGL+SLVDQTISVITNDGRNIVG+LKGFDQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MSSGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98
          LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of IVF0012857 vs. NCBI nr
Match: XP_010060337.1 (sm-like protein LSM8 isoform X2 [Eucalyptus grandis] >XP_030546190.1 sm-like protein LSM8 [Rhodamnia argentea] >KAF8039784.1 hypothetical protein BT93_B2101 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 190 bits (482), Expect = 1.15e-60
Identity = 94/98 (95.92%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          M++GPGLDSLVDQTISVITNDGRNIVGVLKG+DQATNIILDESHERVYSTKEGVQQLVLG
Sbjct: 1  MSTGPGLDSLVDQTISVITNDGRNIVGVLKGYDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 98
          LYIIRGDNIS+VGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 61 LYIIRGDNISVVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of IVF0012857 vs. TAIR 10
Match: AT1G65700.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 171.8 bits (434), Expect = 2.8e-43
Identity = 83/98 (84.69%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MA+  GL++LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ VLG
Sbjct: 1  MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNI ++GELDEELD++LD SKLRAHPLKPV+H
Sbjct: 61 LYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98

[Close]

BLAST of IVF0012857 vs. TAIR 10
Match: AT1G65700.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 171.8 bits (434), Expect = 2.8e-43
Identity = 83/98 (84.69%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG 60
          MA+  GL++LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ VLG
Sbjct: 1  MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLG 60

Query: 61 LYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 99
          LYIIRGDNI ++GELDEELD++LD SKLRAHPLKPV+H
Sbjct: 61 LYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98

[Close]

BLAST of IVF0012857 vs. TAIR 10
Match: AT1G65700.3 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 151.0 bits (380), Expect = 5.0e-37
Identity = 83/141 (58.87%), Postives = 92/141 (65.25%), Query Frame = 0


Query: 1   MASGPGLDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK--------- 60
           MA+  GL++LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STK         
Sbjct: 1   MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKCHLFNRILR 60

Query: 61  ----------------------------------EGVQQLVLGLYIIRGDNISIVGELDE 99
                                             EGVQQ VLGLYIIRGDNI ++GELDE
Sbjct: 61  KLTQIFKIGLVLQFFVCMSGHVDTSLDKCSWIFLEGVQQHVLGLYIIRGDNIGVIGELDE 120

[Close]

BLAST of IVF0012857 vs. TAIR 10
Match: AT1G19120.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-11
Identity = 31/72 (43.06%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 7  LDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          L + +D+ + V+  DGR ++G+L+ FDQ  N +L+E++ERV    +    + LGLYIIRG
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVI-VGDLYCDIPLGLYIIRG 74

Query: 67 DNISIVGELDEE 79
          +N+ ++GELD E
Sbjct: 75 ENVVLIGELDVE 85

[Close]

BLAST of IVF0012857 vs. TAIR 10
Match: AT3G14080.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 63.9 bits (154), Expect = 8.1e-11
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 7  LDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
          L S +D+ + V+  DGR ++G L+ FDQ  N +L+ + ERV    E    + LGLY+IRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGEQYCDIPLGLYVIRG 74

Query: 67 DNISIVGELDEE 79
          +N+ ++GELD E
Sbjct: 75 ENVVLIGELDTE 85

The following BLAST results are available for this feature:

BLAST of IVF0012857 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYI0	3.9e-42	84.69	Sm-like protein LSM8 OS=Arabidopsis thaliana OX=3702 GN=LSM8 PE=1 SV=1	[more]
Q3ZCE0	7.6e-30	61.96	U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=9913 GN=LSM8 PE=3 SV=3	[more]
O95777	7.6e-30	61.96	U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens OX=9606 GN=LSM8 PE=1 SV...	[more]
Q6ZWM4	7.6e-30	61.96	U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus OX=10090 GN=Lsm8 PE=1 S...	[more]
Q5RCP3	7.6e-30	61.96	U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii OX=9601 GN=LSM8 PE=3 SV...	[more]

BLAST of IVF0012857 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3ATI1	9.3e-47	100.00	U6 snRNA-associated Sm-like protein LSm8 OS=Cucumis melo OX=3656 GN=LOC103482675...	[more]
A0A0A0LT86	9.3e-47	100.00	U6 snRNA-associated Sm-like protein LSm8 OS=Cucumis sativus OX=3659 GN=LSM8 PE=3...	[more]
A0A6J1K221	2.7e-46	98.98	U6 snRNA-associated Sm-like protein LSm8 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1GT46	2.7e-46	98.98	U6 snRNA-associated Sm-like protein LSm8 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1DPC5	2.7e-46	98.98	U6 snRNA-associated Sm-like protein LSm8 OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of IVF0012857 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137538.1	3.43e-62	100.00	sm-like protein LSM8 [Cucumis sativus] >XP_008437171.1 PREDICTED: sm-like protei...	[more]
XP_022155134.1	1.40e-61	98.98	sm-like protein LSM8 [Momordica charantia] >XP_022955136.1 sm-like protein LSM8 ...	[more]
XP_031403511.1	4.01e-61	96.94	sm-like protein LSM8 [Punica granatum] >OWM62698.1 hypothetical protein CDL15_Pg...	[more]
XP_042494798.1	5.70e-61	96.94	sm-like protein LSM8 [Macadamia integrifolia] >XP_042494806.1 sm-like protein LS...	[more]
XP_010060337.1	1.15e-60	95.92	sm-like protein LSM8 isoform X2 [Eucalyptus grandis] >XP_030546190.1 sm-like pro...	[more]

BLAST of IVF0012857 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G65700.1	2.8e-43	84.69	Small nuclear ribonucleoprotein family protein	[more]
AT1G65700.2	2.8e-43	84.69	Small nuclear ribonucleoprotein family protein	[more]
AT1G65700.3	5.0e-37	58.87	Small nuclear ribonucleoprotein family protein	[more]
AT1G19120.1	2.1e-11	43.06	Small nuclear ribonucleoprotein family protein	[more]
AT3G14080.1	8.1e-11	43.06	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 5..74 e-value: 5.0E-17 score: 72.6
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 7..73 e-value: 8.8E-18 score: 63.8
None	No IPR available	GENE3D	2.30.30.100		coord: 6..97 e-value: 2.8E-26 score: 93.6
None	No IPR available	PANTHER	PTHR15588:SF9	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM8	coord: 5..98
IPR044642	U6 snRNA-associated Sm-like protein Lsm1/8	PANTHER	PTHR15588	LSM1	coord: 5..98
IPR034103	Sm-like protein Lsm8	CDD	cd01727	LSm8	coord: 5..94 e-value: 2.27933E-46 score: 141.894
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 7..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012857.4	IVF0012857.4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0003723	RNA binding