Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTATCATTGCAAAAGATATAGAATACAAAAAGCTTGTCACGGATGAGGAAGCAAATGAATTCTTGAAAATAGTAAAACAAAGTGAGTATAAGATCATAGAGCAAATGCATCATACTCCAGCTCGAATTTCTTTATTATCGTTGTTTTTGAATTCAGAGCCTCATCGCAAAGTGTTATTAGATATTTTGAACAAGGCACATGTCGGACATGACATTTCAGTGGAAAAGTTTAGTGGAATTATTGGAAACATTACATCTTCAAATTCCATAGTCTTCACAGATGACGAAATTCCTCCTGAAGGCTTAGGCCATACAAAAGCACTGCATATTCAAGTGAAGTGCAAAGACTACGTCATTGCAAGAGTTTTAGTGGATAACGGATCAGCTCTCAATATAATGCCTAAATCTACACTATTGAAGCTTCCCGTGGATATGTCACACATAAAATCAAGTACTATGGTTGTGAAAGCTTTCGATGGGTCACGCAGAGAAGTAATGGGTGACATTGAACTACCAGTTAAAATTGGCCCATGTATTTTCAACATAGTCTTTCAAGTCATGGAGATAACACCCACGTACAGTTTTTTATTAGGACGTCCTTGGATTCACTCCGCAGGAGTGGTGCCATCCACATTGCATCAAAAATTGA
mRNA sequence
ATGCCTATCATTGCAAAAGATATAGAATACAAAAAGCTTGTCACGGATGAGGAAGCAAATGAATTCTTGAAAATAGTAAAACAAAGTGAGTATAAGATCATAGAGCAAATGCATCATACTCCAGCTCGAATTTCTTTATTATCGTTGTTTTTGAATTCAGAGCCTCATCGCAAAGTGTTATTAGATATTTTGAACAAGGCACATGTCGGACATGACATTTCAGTGGAAAAGTTTAGTGGAATTATTGGAAACATTACATCTTCAAATTCCATAGTCTTCACAGATGACGAAATTCCTCCTGAAGGCTTAGGCCATACAAAAGCACTGCATATTCAAGTGAAGTGCAAAGACTACGTCATTGCAAGAGTTTTAGTGGATAACGGATCAGCTCTCAATATAATGCCTAAATCTACACTATTGAAGCTTCCCGTGGATATGTCACACATAAAATCAAGTACTATGGTTGTGAAAGCTTTCGATGGGTCACGCAGAGAAGACGTCCTTGGATTCACTCCGCAGGAGTGGTGCCATCCACATTGCATCAAAAATTGA
Coding sequence (CDS)
ATGCCTATCATTGCAAAAGATATAGAATACAAAAAGCTTGTCACGGATGAGGAAGCAAATGAATTCTTGAAAATAGTAAAACAAAGTGAGTATAAGATCATAGAGCAAATGCATCATACTCCAGCTCGAATTTCTTTATTATCGTTGTTTTTGAATTCAGAGCCTCATCGCAAAGTGTTATTAGATATTTTGAACAAGGCACATGTCGGACATGACATTTCAGTGGAAAAGTTTAGTGGAATTATTGGAAACATTACATCTTCAAATTCCATAGTCTTCACAGATGACGAAATTCCTCCTGAAGGCTTAGGCCATACAAAAGCACTGCATATTCAAGTGAAGTGCAAAGACTACGTCATTGCAAGAGTTTTAGTGGATAACGGATCAGCTCTCAATATAATGCCTAAATCTACACTATTGAAGCTTCCCGTGGATATGTCACACATAAAATCAAGTACTATGGTTGTGAAAGCTTTCGATGGGTCACGCAGAGAAGACGTCCTTGGATTCACTCCGCAGGAGTGGTGCCATCCACATTGCATCAAAAATTGA
Protein sequence
MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRREDVLGFTPQEWCHPHCIKN
Homology
BLAST of IVF0012835 vs. ExPASy TrEMBL
Match:
A0A5D3DEB3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00440 PE=4 SV=1)
HSP 1 Score: 325.1 bits (832), Expect = 1.9e-85
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
Query: 1 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL
Sbjct: 667 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 726
Query: 61 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI
Sbjct: 727 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 786
Query: 121 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE 166
ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
Sbjct: 787 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE 831
BLAST of IVF0012835 vs. ExPASy TrEMBL
Match:
A0A5A7TRL7 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00010 PE=4 SV=1)
HSP 1 Score: 320.1 bits (819), Expect = 6.1e-84
Identity = 162/165 (98.18%), Postives = 164/165 (99.39%), Query Frame = 0
Query: 1 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
MPIIAKDIEYK LVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL
Sbjct: 313 MPIIAKDIEYKNLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 372
Query: 61 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
LDILNKAHVGHDISV+KFSGIIGNITSSNSIVFTDD+IPPEGLGHTKALHIQVKCKDYVI
Sbjct: 373 LDILNKAHVGHDISVKKFSGIIGNITSSNSIVFTDDKIPPEGLGHTKALHIQVKCKDYVI 432
Query: 121 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE 166
ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
Sbjct: 433 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE 477
BLAST of IVF0012835 vs. ExPASy TrEMBL
Match:
A0A5A7T7R4 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002820 PE=4 SV=1)
HSP 1 Score: 319.7 bits (818), Expect = 7.9e-84
Identity = 162/165 (98.18%), Postives = 162/165 (98.18%), Query Frame = 0
Query: 1 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL
Sbjct: 459 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 518
Query: 61 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
LDILNKAHVGHDISVEKFSGIIGNIT NSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI
Sbjct: 519 LDILNKAHVGHDISVEKFSGIIGNITPPNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 578
Query: 121 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE 166
ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVK FDGSRRE
Sbjct: 579 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKVFDGSRRE 623
BLAST of IVF0012835 vs. ExPASy TrEMBL
Match:
A0A5A7T0R1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00300 PE=4 SV=1)
HSP 1 Score: 318.2 bits (814), Expect = 2.3e-83
Identity = 161/165 (97.58%), Postives = 164/165 (99.39%), Query Frame = 0
Query: 1 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMH+TPARISLLSLFLNSEPHRK+L
Sbjct: 673 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHYTPARISLLSLFLNSEPHRKLL 732
Query: 61 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQ+KCKDYVI
Sbjct: 733 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQLKCKDYVI 792
Query: 121 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE 166
ARVLVDNGSALNIMPKSTLL LPVDMSHIKSSTMVVKAFDGSRRE
Sbjct: 793 ARVLVDNGSALNIMPKSTLLMLPVDMSHIKSSTMVVKAFDGSRRE 837
BLAST of IVF0012835 vs. ExPASy TrEMBL
Match:
A0A5A7VIM6 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001370 PE=4 SV=1)
HSP 1 Score: 315.8 bits (808), Expect = 1.1e-82
Identity = 160/165 (96.97%), Postives = 163/165 (98.79%), Query Frame = 0
Query: 1 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL
Sbjct: 640 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 699
Query: 61 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
LDILNKAHVGHDIS+EKFSGIIGNITSSN IVFTDD+IPPEGLGHTKALHIQVKCKDYVI
Sbjct: 700 LDILNKAHVGHDISMEKFSGIIGNITSSNFIVFTDDKIPPEGLGHTKALHIQVKCKDYVI 759
Query: 121 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE 166
ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVK F+GSRRE
Sbjct: 760 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKDFNGSRRE 804
BLAST of IVF0012835 vs. NCBI nr
Match:
KAA0065724.1 (uncharacterized protein E6C27_scaffold37G00080 [Cucumis melo var. makuwa] >TYK13749.1 uncharacterized protein E5676_scaffold488G00050 [Cucumis melo var. makuwa])
HSP 1 Score: 304 bits (778), Expect = 2.85e-101
Identity = 157/163 (96.32%), Postives = 158/163 (96.93%), Query Frame = 0
Query: 1 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
MPIIAKDIEYKKLVTDEEANEFLKIVKQSE KIIEQMHHT ARISLLSLFLNSEPHR+VL
Sbjct: 101 MPIIAKDIEYKKLVTDEEANEFLKIVKQSENKIIEQMHHTQARISLLSLFLNSEPHREVL 160
Query: 61 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
LDILNKAHVGHDISVEKFSGIIGNITSSNSIV TDDEIPPEGLGHTKALHIQVKCKDYVI
Sbjct: 161 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVLTDDEIPPEGLGHTKALHIQVKCKDYVI 220
Query: 121 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSR 163
ARVLVDN S LNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSR
Sbjct: 221 ARVLVDNRSTLNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSR 263
BLAST of IVF0012835 vs. NCBI nr
Match:
TYK21788.1 (uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa])
HSP 1 Score: 323 bits (828), Expect = 7.90e-100
Identity = 167/169 (98.82%), Postives = 168/169 (99.41%), Query Frame = 0
Query: 1 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL
Sbjct: 667 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 726
Query: 61 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI
Sbjct: 727 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 786
Query: 121 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRREDVLG 169
ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE V+G
Sbjct: 787 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE-VMG 834
BLAST of IVF0012835 vs. NCBI nr
Match:
TYK27304.1 (uncharacterized protein E5676_scaffold1784G00170 [Cucumis melo var. makuwa])
HSP 1 Score: 310 bits (793), Expect = 2.11e-99
Identity = 159/165 (96.36%), Postives = 162/165 (98.18%), Query Frame = 0
Query: 1 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
M IIAKDIEYKKLVTDEEANEFLK+VKQSEYKII+QMHHTPA+ISLLSLFLNSEPH KVL
Sbjct: 443 MSIIAKDIEYKKLVTDEEANEFLKMVKQSEYKIIKQMHHTPAQISLLSLFLNSEPHCKVL 502
Query: 61 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDD IPPEGLGHTKALHIQVKCKDYVI
Sbjct: 503 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDGIPPEGLGHTKALHIQVKCKDYVI 562
Query: 121 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE 165
ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
Sbjct: 563 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE 607
BLAST of IVF0012835 vs. NCBI nr
Match:
KAA0037781.1 (uncharacterized protein E6C27_scaffold471G00160 [Cucumis melo var. makuwa])
HSP 1 Score: 310 bits (793), Expect = 2.11e-99
Identity = 159/165 (96.36%), Postives = 162/165 (98.18%), Query Frame = 0
Query: 1 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
M IIAKDIEYKKLVTDEEANEFLK+VKQSEYKII+QMHHTPA+ISLLSLFLNSEPH KVL
Sbjct: 443 MSIIAKDIEYKKLVTDEEANEFLKMVKQSEYKIIKQMHHTPAQISLLSLFLNSEPHCKVL 502
Query: 61 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDD IPPEGLGHTKALHIQVKCKDYVI
Sbjct: 503 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDGIPPEGLGHTKALHIQVKCKDYVI 562
Query: 121 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE 165
ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
Sbjct: 563 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE 607
BLAST of IVF0012835 vs. NCBI nr
Match:
KAA0036950.1 (uncharacterized protein E6C27_scaffold86G00300 [Cucumis melo var. makuwa])
HSP 1 Score: 316 bits (810), Expect = 4.07e-98
Identity = 163/169 (96.45%), Postives = 167/169 (98.82%), Query Frame = 0
Query: 1 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVL 60
MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMH+TPARISLLSLFLNSEPHRK+L
Sbjct: 673 MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHYTPARISLLSLFLNSEPHRKLL 732
Query: 61 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVI 120
LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQ+KCKDYVI
Sbjct: 733 LDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALHIQLKCKDYVI 792
Query: 121 ARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRREDVLG 169
ARVLVDNGSALNIMPKSTLL LPVDMSHIKSSTMVVKAFDGSRRE V+G
Sbjct: 793 ARVLVDNGSALNIMPKSTLLMLPVDMSHIKSSTMVVKAFDGSRRE-VMG 840
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DEB3 | 1.9e-85 | 100.00 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5A7TRL7 | 6.1e-84 | 98.18 | Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00010... | [more] |
A0A5A7T7R4 | 7.9e-84 | 98.18 | Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00282... | [more] |
A0A5A7T0R1 | 2.3e-83 | 97.58 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7VIM6 | 1.1e-82 | 96.97 | RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein... | [more] |
Match Name | E-value | Identity | Description | |
KAA0065724.1 | 2.85e-101 | 96.32 | uncharacterized protein E6C27_scaffold37G00080 [Cucumis melo var. makuwa] >TYK13... | [more] |
TYK21788.1 | 7.90e-100 | 98.82 | uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa] | [more] |
TYK27304.1 | 2.11e-99 | 96.36 | uncharacterized protein E5676_scaffold1784G00170 [Cucumis melo var. makuwa] | [more] |
KAA0037781.1 | 2.11e-99 | 96.36 | uncharacterized protein E6C27_scaffold471G00160 [Cucumis melo var. makuwa] | [more] |
KAA0036950.1 | 4.07e-98 | 96.45 | uncharacterized protein E6C27_scaffold86G00300 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |