IVF0012793 (gene) Melon (IVF77) v1

Overview


Name	IVF0012793
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr06: 12621944 .. 12622180 (-)
RNA-Seq Expression	IVF0012793
Synteny	IVF0012793

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCGTTAGAGCCCCGCGCCAATGCCAGTTCTGTAGAAATGGGGGAAGAATGGTCATCAACAGGAGAAGGAAAAAACGAAGACATATTCTGGGAAGTTCTATCTGGTGAAACATGCGGAGAAACCGATATGGAAGAGGCAGCCACTGGAGACGAGACAAAAGTTGTGGCCACAGACAAGGCCACACAGAAGCAAACCGCGGCCATAGCCTTTGATGCAGAGAGATCTCAGTAA

mRNA sequence

ATGAACTCGTTAGAGCCCCGCGCCAATGCCAGTTCTGTAGAAATGGGGGAAGAATGGTCATCAACAGGAGAAGGAAAAAACGAAGACATATTCTGGGAAGTTCTATCTGGTGAAACATGCGGAGAAACCGATATGGAAGAGGCAGCCACTGGAGACGAGACAAAAGTTGTGGCCACAGACAAGGCCACACAGAAGCAAACCGCGGCCATAGCCTTTGATGCAGAGAGATCTCAGTAA

Coding sequence (CDS)

ATGAACTCGTTAGAGCCCCGCGCCAATGCCAGTTCTGTAGAAATGGGGGAAGAATGGTCATCAACAGGAGAAGGAAAAAACGAAGACATATTCTGGGAAGTTCTATCTGGTGAAACATGCGGAGAAACCGATATGGAAGAGGCAGCCACTGGAGACGAGACAAAAGTTGTGGCCACAGACAAGGCCACACAGAAGCAAACCGCGGCCATAGCCTTTGATGCAGAGAGATCTCAGTAA

Protein sequence

MNSLEPRANASSVEMGEEWSSTGEGKNEDIFWEVLSGETCGETDMEEAATGDETKVVATDKATQKQTAAIAFDAERSQ

Homology

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BLAST of IVF0012793 vs. NCBI nr
Match: KAG6581131.1 (hypothetical protein SDJN03_21133, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.2 bits (173), Expect = 9.11e-14
Identity = 40/64 (62.50%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 8  ANASSVEMGEEWSSTGEGKNEDIFWEVLSGETCGETDMEEAATGDETKVVATDKATQKQT 67
          A A + EMGEE  STG+GKNEDIFWE L G T GE D+ E A GD  K  A DKATQK  
Sbjct: 10 AGAGAAEMGEERPSTGDGKNEDIFWEALCGGTGGEADIAETAAGDTAKKAARDKATQKNA 69

Query: 68 AAIA 71
          AA A
Sbjct: 70 AAAA 73

The following BLAST results are available for this feature:

BLAST of IVF0012793 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012793 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012793 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581131.1	9.11e-14	62.50	hypothetical protein SDJN03_21133, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of IVF0012793 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012793.1	IVF0012793.1	mRNA