IVF0012763 (gene) Melon (IVF77) v1

Overview
NameIVF0012763
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationtig00000607_ERROPOS641385+: 200189 .. 200536 (-)
RNA-Seq ExpressionIVF0012763
SyntenyIVF0012763
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCAAACAATTTCAACATGGCAGAACTAGAAGAGGAAAATCTCAATGAGCCCAATCAAGTTAAATCAAGTACAACAAGTCTACCTCTACAAGTTGACGGACTCGGCAACAGTTTCACTAATGAAAGATCAAAAATCACAAGCACGGTCATTGATCAAGATGATGACAAGGCTTTCAAGTTGAAATTGGTGAATTGGCTAAGAGATAACGAGCTTAAACTGTCTCCAAAATATACTTCAGAAGCCCCTAGCTCATCTACAAATCCTGTAGTGTTAATTGATGAAAACAAGCTTGTATCAGGCCATAGGCCTTGGGGGAAATGGGTAACACATGAAGGTTCTTAG

mRNA sequence

ATGGATGCAAACAATTTCAACATGGCAGAACTAGAAGAGGAAAATCTCAATGAGCCCAATCAAGTTAAATCAAGTACAACAAGTCTACCTCTACAAGTTGACGGACTCGGCAACAGTTTCACTAATGAAAGATCAAAAATCACAAGCACGGTCATTGATCAAGATGATGACAAGGCTTTCAAGTTGAAATTGGTGAATTGGCTAAGAGATAACGAGCTTAAACTGTCTCCAAAATATACTTCAGAAGCCCCTAGCTCATCTACAAATCCTGTAGTGTTAATTGATGAAAACAAGCTTGTATCAGGCCATAGGCCTTGGGGGAAATGGGTAACACATGAAGGTTCTTAG

Coding sequence (CDS)

ATGGATGCAAACAATTTCAACATGGCAGAACTAGAAGAGGAAAATCTCAATGAGCCCAATCAAGTTAAATCAAGTACAACAAGTCTACCTCTACAAGTTGACGGACTCGGCAACAGTTTCACTAATGAAAGATCAAAAATCACAAGCACGGTCATTGATCAAGATGATGACAAGGCTTTCAAGTTGAAATTGGTGAATTGGCTAAGAGATAACGAGCTTAAACTGTCTCCAAAATATACTTCAGAAGCCCCTAGCTCATCTACAAATCCTGTAGTGTTAATTGATGAAAACAAGCTTGTATCAGGCCATAGGCCTTGGGGGAAATGGGTAACACATGAAGGTTCTTAG

Protein sequence

MDANNFNMAELEEENLNEPNQVKSSTTSLPLQVDGLGNSFTNERSKITSTVIDQDDDKAFKLKLVNWLRDNELKLSPKYTSEAPSSSTNPVVLIDENKLVSGHRPWGKWVTHEGS
Homology
BLAST of IVF0012763 vs. ExPASy TrEMBL
Match: A0A5D3BPD1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00780 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.7e-28
Identity = 71/108 (65.74%), Postives = 83/108 (76.85%), Query Frame = 0

Query: 1   MDANNFNMAELEEENLNEPNQVKSSTTSLPLQVDGLGNSFTNERSKITSTVIDQDDDKAF 60
           MDANN NM +LEE N N+ +Q+K S   +  QVD   N+ T ERSK TST  DQD+DKAF
Sbjct: 268 MDANNNNMTKLEEVNHNKASQMKDSRKRILPQVDSSNNNLTIERSKTTSTNYDQDEDKAF 327

Query: 61  KLKLVNWLRDNELKLSPKYTSEAPSSSTNPVVLIDENKLVSGHRPWGK 109
           KLKLVNWL+DNELKLS KY SEAPSSSTNP++LID+N LVS H P G+
Sbjct: 328 KLKLVNWLKDNELKLSSKYASEAPSSSTNPLLLIDQNLLVSSHGPLGE 375

BLAST of IVF0012763 vs. ExPASy TrEMBL
Match: A0A5D3BYJ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00330 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 7.3e-11
Identity = 46/104 (44.23%), Postives = 62/104 (59.62%), Query Frame = 0

Query: 4   NNFNMAELEEENLNEPNQVKSSTTSLPLQVDGLGNSFTNERSKITSTVIDQDDDKAFKLK 63
           NN      E EN N+ N +K    ++  Q      + T    K TS   +Q++D+AFK K
Sbjct: 481 NNKTKTNAEGENPNQTNTIKEGVETIH-QKGIPSKNTTAGILKDTSIEDEQENDQAFKEK 540

Query: 64  LVNWLRDNELKLSPKYTSEAPSSSTNPVVLIDENKLVSGHRPWG 108
           LVNWL++NELKLSPKYTS+  SSS  PV++ D+N  +S H P G
Sbjct: 541 LVNWLKENELKLSPKYTSDIASSSNFPVIMSDQNVDLSSHGPLG 583

BLAST of IVF0012763 vs. ExPASy TrEMBL
Match: A0A5D3BKT8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005570 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-09
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 0

Query: 21  QVKSSTTSLPLQVD---GLGNSFTNERSKITSTVIDQDDDKAFKLKLVNWLRDNELKLSP 80
           + K+ T S+    D       S     SK   T  + + D+AFK KLV WL++NELKLSP
Sbjct: 585 EAKNLTVSVKEGADQNKSASRSTAEGNSKDAKTGSEMEIDRAFKEKLVIWLKENELKLSP 644

Query: 81  KYTSEAPSSSTNPVVLIDENKLVSGHRPWG 108
           KYT++ PSSS+ PV++ D+N  ++GH P G
Sbjct: 645 KYTNDVPSSSSFPVIVSDQNMDIAGHGPLG 674

BLAST of IVF0012763 vs. ExPASy TrEMBL
Match: A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.3e-09
Identity = 39/90 (43.33%), Postives = 54/90 (60.00%), Query Frame = 0

Query: 21  QVKSSTTSLPLQVD---GLGNSFTNERSKITSTVIDQDDDKAFKLKLVNWLRDNELKLSP 80
           + K+ T S+    D       S     SK   T  + + D+AFK KLV WL++NELKLSP
Sbjct: 585 EAKNLTVSVKEGADQNKSASRSTAEGNSKDAKTGSELEIDRAFKEKLVIWLKENELKLSP 644

Query: 81  KYTSEAPSSSTNPVVLIDENKLVSGHRPWG 108
           KYT++ PSSS  PV++ D+N  ++GH P G
Sbjct: 645 KYTNDVPSSSYFPVIVSDQNMDIAGHGPLG 674

BLAST of IVF0012763 vs. ExPASy TrEMBL
Match: A0A5D3CA17 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00050 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.3e-09
Identity = 39/90 (43.33%), Postives = 54/90 (60.00%), Query Frame = 0

Query: 21  QVKSSTTSLPLQVD---GLGNSFTNERSKITSTVIDQDDDKAFKLKLVNWLRDNELKLSP 80
           + K+ T S+    D       S     SK   T  + + D+AFK KLV WL++NELKLSP
Sbjct: 585 EAKNLTVSVKEGADQNKSASRSTAEGNSKDAKTGSELEIDRAFKEKLVIWLKENELKLSP 644

Query: 81  KYTSEAPSSSTNPVVLIDENKLVSGHRPWG 108
           KYT++ PSSS  PV++ D+N  ++GH P G
Sbjct: 645 KYTNDVPSSSYFPVIVSDQNMDIAGHGPLG 674

BLAST of IVF0012763 vs. NCBI nr
Match: TYK01064.1 (hypothetical protein E5676_scaffold264G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (337), Expect = 3.85e-35
Identity = 71/108 (65.74%), Postives = 83/108 (76.85%), Query Frame = 0

Query: 1   MDANNFNMAELEEENLNEPNQVKSSTTSLPLQVDGLGNSFTNERSKITSTVIDQDDDKAF 60
           MDANN NM +LEE N N+ +Q+K S   +  QVD   N+ T ERSK TST  DQD+DKAF
Sbjct: 268 MDANNNNMTKLEEVNHNKASQMKDSRKRILPQVDSSNNNLTIERSKTTSTNYDQDEDKAF 327

Query: 61  KLKLVNWLRDNELKLSPKYTSEAPSSSTNPVVLIDENKLVSGHRPWGK 108
           KLKLVNWL+DNELKLS KY SEAPSSSTNP++LID+N LVS H P G+
Sbjct: 328 KLKLVNWLKDNELKLSSKYASEAPSSSTNPLLLIDQNLLVSSHGPLGE 375

BLAST of IVF0012763 vs. NCBI nr
Match: TYK04225.1 (hypothetical protein E5676_scaffold24967G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 2.39e-13
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 0

Query: 4   NNFNMAELEEENLNEPNQVKSSTTSLPLQVDGLGNSFTNERS-KITSTVIDQDDDKAFKL 63
           NN      E EN N+ N +K    ++  +  G+ +  T     K TS   +Q++D+AFK 
Sbjct: 481 NNKTKTNAEGENPNQTNTIKEGVETIHQK--GIPSKNTTAGILKDTSIEDEQENDQAFKE 540

Query: 64  KLVNWLRDNELKLSPKYTSEAPSSSTNPVVLIDENKLVSGHRPWG 107
           KLVNWL++NELKLSPKYTS+  SSS  PV++ D+N  +S H P G
Sbjct: 541 KLVNWLKENELKLSPKYTSDIASSSNFPVIMSDQNVDLSSHGPLG 583

BLAST of IVF0012763 vs. NCBI nr
Match: KAA0056838.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ99341.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 5.60e-12
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 0

Query: 21  QVKSSTTSLPLQVD---GLGNSFTNERSKITSTVIDQDDDKAFKLKLVNWLRDNELKLSP 80
           + K+ T S+    D       S     SK   T  + + D+AFK KLV WL++NELKLSP
Sbjct: 585 EAKNLTVSVKEGADQNKSASRSTAEGNSKDAKTGSEMEIDRAFKEKLVIWLKENELKLSP 644

Query: 81  KYTSEAPSSSTNPVVLIDENKLVSGHRPWG 107
           KYT++ PSSS+ PV++ D+N  ++GH P G
Sbjct: 645 KYTNDVPSSSSFPVIVSDQNMDIAGHGPLG 674

BLAST of IVF0012763 vs. NCBI nr
Match: KAA0035247.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK22402.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 2.66e-11
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 0

Query: 39  SFTNERSKITSTVIDQDDDKAFKLKLVNWLRDNELKLSPKYTSEAPSSSTNPVVLIDENK 98
           S T+  SK   T  + + D+AFK KLV WL++NELKLSPKYT++ PSSS  PV++ D+N 
Sbjct: 561 STTDGISKDAKTDSELEIDRAFKEKLVIWLKENELKLSPKYTNDVPSSSYFPVLVSDQNG 620

Query: 99  LVSGHRPWG 107
            +SGH P G
Sbjct: 621 DLSGHGPLG 629

BLAST of IVF0012763 vs. NCBI nr
Match: TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 2.72e-11
Identity = 39/90 (43.33%), Postives = 54/90 (60.00%), Query Frame = 0

Query: 21  QVKSSTTSLPLQVD---GLGNSFTNERSKITSTVIDQDDDKAFKLKLVNWLRDNELKLSP 80
           + K+ T S+    D       S     SK   T  + + D+AFK KLV WL++NELKLSP
Sbjct: 585 EAKNLTVSVKEGADQNKSASRSTAEGNSKDAKTGSELEIDRAFKEKLVIWLKENELKLSP 644

Query: 81  KYTSEAPSSSTNPVVLIDENKLVSGHRPWG 107
           KYT++ PSSS  PV++ D+N  ++GH P G
Sbjct: 645 KYTNDVPSSSYFPVIVSDQNMDIAGHGPLG 674

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BPD11.7e-2865.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BYJ07.3e-1144.23Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BKT81.4e-0943.33LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7US625.3e-0943.33LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3CA175.3e-0943.33LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
TYK01064.13.85e-3565.74hypothetical protein E5676_scaffold264G00780 [Cucumis melo var. makuwa][more]
TYK04225.12.39e-1343.81hypothetical protein E5676_scaffold24967G00330 [Cucumis melo var. makuwa][more]
KAA0056838.15.60e-1243.33LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ993... [more]
KAA0035247.12.66e-1153.62LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK224... [more]
TYK08190.12.72e-1143.33LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..40

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0012763.1IVF0012763.1mRNA