IVF0012754 (gene) Melon (IVF77) v1

Overview
NameIVF0012754
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr06: 15317313 .. 15317477 (-)
RNA-Seq ExpressionIVF0012754
SyntenyIVF0012754
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAAGAGTTCGACGAAGAAATTGAGAGGATGAGTCTGAAACAAAGGTTGAGGCCTGAAGAACTTAGACTTGTTGATCTTGTGCAACCAAAGAAGGGCAAGAGCAAAGTAGGGGCATCTAGACTTAAGGTTGTCCAAGCGAATGTGTCTTTAAACAACTAA

mRNA sequence

ATGGCAGAAGAGTTCGACGAAGAAATTGAGAGGATGAGTCTGAAACAAAGGTTGAGGCCTGAAGAACTTAGACTTGTTGATCTTGTGCAACCAAAGAAGGGCAAGAGCAAAGTAGGGGCATCTAGACTTAAGGTTGTCCAAGCGAATGTGTCTTTAAACAACTAA

Coding sequence (CDS)

ATGGCAGAAGAGTTCGACGAAGAAATTGAGAGGATGAGTCTGAAACAAAGGTTGAGGCCTGAAGAACTTAGACTTGTTGATCTTGTGCAACCAAAGAAGGGCAAGAGCAAAGTAGGGGCATCTAGACTTAAGGTTGTCCAAGCGAATGTGTCTTTAAACAACTAA

Protein sequence

MAEEFDEEIERMSLKQRLRPEELRLVDLVQPKKGKSKVGASRLKVVQANVSLNN
Homology
BLAST of IVF0012754 vs. ExPASy TrEMBL
Match: A0A5D3DFD3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00890 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-13
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0

Query: 1  MAEEFDEEIERMSLKQRLRPEELRLVDLVQPKKGKSKVGASRLKVV 47
          MAEEFDEEIERMSLKQRLRPEELRLVDLVQPKKGKSKVGASRLKV+
Sbjct: 1  MAEEFDEEIERMSLKQRLRPEELRLVDLVQPKKGKSKVGASRLKVM 46

BLAST of IVF0012754 vs. ExPASy TrEMBL
Match: A0A5D3CKB6 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001600 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.3e-05
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 0

Query: 1   MAEEFDEEIERMS-LKQRLRPEELRLVDLVQPKKGKSKVGASR 43
           +AEEF +EIERMS LK RLRPEEL L+ +VQPKKGK+K GA R
Sbjct: 247 VAEEFSQEIERMSPLKPRLRPEELGLISVVQPKKGKNKTGALR 289

BLAST of IVF0012754 vs. NCBI nr
Match: KAA0060350.1 (hypothetical protein E6C27_scaffold22G001410 [Cucumis melo var. makuwa] >TYK22100.1 hypothetical protein E5676_scaffold318G00890 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 6.66e-19
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0

Query: 1  MAEEFDEEIERMSLKQRLRPEELRLVDLVQPKKGKSKVGASRLKVV 46
          MAEEFDEEIERMSLKQRLRPEELRLVDLVQPKKGKSKVGASRLKV+
Sbjct: 1  MAEEFDEEIERMSLKQRLRPEELRLVDLVQPKKGKSKVGASRLKVM 46

BLAST of IVF0012754 vs. NCBI nr
Match: TYK11975.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 8.57e-07
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 0

Query: 1   MAEEFDEEIERMS-LKQRLRPEELRLVDLVQPKKGKSKVGASR 42
           +AEEF +EIERMS LK RLRPEEL L+ +VQPKKGK+K GA R
Sbjct: 247 VAEEFSQEIERMSPLKPRLRPEELGLISVVQPKKGKNKTGALR 289

BLAST of IVF0012754 vs. NCBI nr
Match: KAA0043535.1 (hypothetical protein E6C27_scaffold335G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 47.8 bits (112), Expect = 1.72e-04
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 1   MAEEFDEEIERMS-LKQRLRPEELRLVDLVQPKKGKSKVGASRL 43
           +AEEF +EIERMS L+ RL P E RL ++VQPKK KSK G SRL
Sbjct: 98  VAEEFSKEIERMSPLEPRLSPNEPRLKEVVQPKKKKSKAGTSRL 141

BLAST of IVF0012754 vs. NCBI nr
Match: KAA0052868.1 (stress response protein NST1-like [Cucumis melo var. makuwa] >TYK04357.1 stress response protein NST1-like [Cucumis melo var. makuwa])

HSP 1 Score: 47.4 bits (111), Expect = 2.55e-04
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 0

Query: 1   MAEEFDEEIERMS-LKQRLRPEELRLVDLVQPKKGKSKVGASRLKVVQANVSLN 53
           + EEF +EI+RMS L+ RLRP+E  LV + QPKKGK+K G SR + VQ    L+
Sbjct: 160 VVEEFSQEIKRMSSLEPRLRPKETGLVSVAQPKKGKNKEGTSRPEDVQKGSKLS 213

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DFD32.2e-1397.83Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CKB66.3e-0572.09Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
Match NameE-valueIdentityDescription
KAA0060350.16.66e-1997.83hypothetical protein E6C27_scaffold22G001410 [Cucumis melo var. makuwa] >TYK2210... [more]
TYK11975.18.57e-0772.09Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
KAA0043535.11.72e-0465.91hypothetical protein E6C27_scaffold335G00290 [Cucumis melo var. makuwa][more]
KAA0052868.12.55e-0453.70stress response protein NST1-like [Cucumis melo var. makuwa] >TYK04357.1 stress ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0012754.1IVF0012754.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding