IVF0012737 (gene) Melon (IVF77) v1

Overview
NameIVF0012737
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr10: 20366055 .. 20366407 (+)
RNA-Seq ExpressionIVF0012737
SyntenyIVF0012737
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAAGAGATGTCTGCATCACTGCATCCTAAAATGCGTTTTGATGGACCAATTCTACTTTGGGCTGAGCAAGGATACATAACAATTTGCTGATGTTAGGTTTACTGGTGGGATGTTGAGATTGTCTTACAACCAGATCAAGAAAACGTTGGACGCTATGGCCAGCAATAGCCTGGAATGGAGAGAATACGGTTTTGATCACGAAATGATAACTGAGGAAACATAGGAAGAATAGAATATGGAATAGATAGAAATGTGATGGTGGTGTTACAAGGCCAAGTCACTAAAATAAACAAACTCCTTAAATCAATGCCATTATCGCAAGTTAATGCCGCAGGGAGCTATGTTTAG

mRNA sequence

ATGATCAAGAGATGTCTGCATCACTGCATCCTAAAATGCGTTTTGATGGACCAATTCTACTTTGGGTTTACTGGTGGGATGTTGAGATTGTCTTACAACCAGATCAAGAAAACGTTGGACGCTATGGCCAGCAATAGCCTGGAATGGAGAGAATACGGAAGAATAGAATATGGAATAGATAGAAATGTGATGGTGGTGTTACAAGGCCAAGTCACTAAAATAAACAAACTCCTTAAATCAATGCCATTATCGCAAGTTAATGCCGCAGGGAGCTATGTTTAG

Coding sequence (CDS)

ATGATCAAGAGATGTCTGCATCACTGCATCCTAAAATGCGTTTTGATGGACCAATTCTACTTTGGGTTTACTGGTGGGATGTTGAGATTGTCTTACAACCAGATCAAGAAAACGTTGGACGCTATGGCCAGCAATAGCCTGGAATGGAGAGAATACGGAAGAATAGAATATGGAATAGATAGAAATGTGATGGTGGTGTTACAAGGCCAAGTCACTAAAATAAACAAACTCCTTAAATCAATGCCATTATCGCAAGTTAATGCCGCAGGGAGCTATGTTTAG

Protein sequence

MIKRCLHHCILKCVLMDQFYFGFTGGMLRLSYNQIKKTLDAMASNSLEWREYGRIEYGIDRNVMVVLQGQVTKINKLLKSMPLSQVNAAGSYV
Homology
BLAST of IVF0012737 vs. ExPASy TrEMBL
Match: A0A5D3CC26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00270 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.9e-21
Identity = 65/120 (54.17%), Postives = 74/120 (61.67%), Query Frame = 0

Query: 1   MIKRCLHHCILKCVLMDQFYFG------------FTGGMLRLSYNQIKKTLDAMASNSLE 60
           MIKRC HHCI +CVLM+QFYFG            FTGGMLR SYNQIK  LD MASNS E
Sbjct: 21  MIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGMLRSSYNQIKNMLDTMASNSQE 80

Query: 61  WRE---------------YGRIEYGIDRNVMVVLQGQVTKINKLLKSMPLSQVNAAGSYV 94
           WR+                GRIE GID ++MV LQGQV ++N +L+SM L QVN   S V
Sbjct: 81  WRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIEMN-ILQSMALLQVNVVRSSV 139

BLAST of IVF0012737 vs. ExPASy TrEMBL
Match: A0A0A0L0Y4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131150 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.1e-20
Identity = 61/120 (50.83%), Postives = 72/120 (60.00%), Query Frame = 0

Query: 1   MIKRCLHHCILKCVLMDQFYFG------------FTGGMLRLSYNQIKKTLDAMASNSLE 60
           M+K CLHH IL CV+++QFYFG            F GGMLRLS N IK TLDAM SNS E
Sbjct: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60

Query: 61  W---------------REYGRIEYGIDRNVMVVLQGQVTKINKLLKSMPLSQVNAAGSYV 94
           W               RE GR   G + N M+ LQ QVT++NKLL+SM LSQ+NA GS +
Sbjct: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120

BLAST of IVF0012737 vs. ExPASy TrEMBL
Match: A0A0A0K6F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18
Identity = 56/112 (50.00%), Postives = 73/112 (65.18%), Query Frame = 0

Query: 1   MIKRCLHHCILKCVLMDQFYFG------------FTGGMLRLSYNQIKKTLDAMASNSLE 60
           ++K C  H I +CV M+ FYFG            F GGMLR SYNQIK TLD+M++NS E
Sbjct: 21  LVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMSNNSQE 80

Query: 61  W-------REYGRIEYGIDRNVMVVLQGQVTKINKLLKSMPLSQVNAAGSYV 94
           W       R  GR + G+D++V+VVLQGQ+  +N LL+SM LSQVNAA +Y+
Sbjct: 81  WDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTLSQVNAANNYI 132

BLAST of IVF0012737 vs. ExPASy TrEMBL
Match: A0A5A7TUE1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00450 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.4e-14
Identity = 50/102 (49.02%), Postives = 60/102 (58.82%), Query Frame = 0

Query: 1   MIKRCLHHCILKCVLMDQFYFG------------FTGGMLRLSYNQIKKTLDAMASNSLE 60
           ++K CLHH I KCVLM++FYF             F GG+LR SYNQ K  LD M SNS E
Sbjct: 38  LVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQE 97

Query: 61  WRE------------YGRIEYGIDRNVMVVLQGQVTKINKLL 79
            R+             GR + G+DRN MV LQGQVT++NKLL
Sbjct: 98  CRDDCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKLL 139

BLAST of IVF0012737 vs. ExPASy TrEMBL
Match: A0A5D3D2S0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00800 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.9e-11
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 27 MLRLSYNQIKKTLDAMASNSLEWRE---------YGRIEYGIDRNVMVVLQGQVTKINKL 86
          ML+ SY QIK TLDA+ +NS E R+          GR + G+DRNV+V LQGQVTK+ KL
Sbjct: 1  MLQSSYYQIKTTLDAITNNSQELRDDDLRLQHESRGRTDAGMDRNVIVALQGQVTKMKKL 60

Query: 87 LKSMPLSQVNAAGSYV 94
          L+SM LSQV+A G+YV
Sbjct: 61 LQSMALSQVDAVGNYV 76

BLAST of IVF0012737 vs. NCBI nr
Match: KGN53801.1 (hypothetical protein Csa_014772 [Cucumis sativus])

HSP 1 Score: 103 bits (257), Expect = 4.78e-26
Identity = 61/120 (50.83%), Postives = 72/120 (60.00%), Query Frame = 0

Query: 1   MIKRCLHHCILKCVLMDQFYFG------------FTGGMLRLSYNQIKKTLDAMASNSLE 60
           M+K CLHH IL CV+++QFYFG            F GGMLRLS N IK TLDAM SNS E
Sbjct: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60

Query: 61  WR---------------EYGRIEYGIDRNVMVVLQGQVTKINKLLKSMPLSQVNAAGSYV 93
           WR               E GR   G + N M+ LQ QVT++NKLL+SM LSQ+NA GS +
Sbjct: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120

BLAST of IVF0012737 vs. NCBI nr
Match: KAA0048713.1 (hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916.1 hypothetical protein E5676_scaffold265G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (268), Expect = 1.85e-25
Identity = 65/120 (54.17%), Postives = 74/120 (61.67%), Query Frame = 0

Query: 1   MIKRCLHHCILKCVLMDQFYFG------------FTGGMLRLSYNQIKKTLDAMASNSLE 60
           MIKRC HHCI +CVLM+QFYFG            FTGGMLR SYNQIK  LD MASNS E
Sbjct: 21  MIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGMLRSSYNQIKNMLDTMASNSQE 80

Query: 61  WREY---------------GRIEYGIDRNVMVVLQGQVTKINKLLKSMPLSQVNAAGSYV 93
           WR+                GRIE GID ++MV LQGQV ++N +L+SM L QVN   S V
Sbjct: 81  WRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIEMN-ILQSMALLQVNVVRSSV 139

BLAST of IVF0012737 vs. NCBI nr
Match: KGN44484.1 (hypothetical protein Csa_015918 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 3.82e-24
Identity = 56/112 (50.00%), Postives = 73/112 (65.18%), Query Frame = 0

Query: 1   MIKRCLHHCILKCVLMDQFYFG------------FTGGMLRLSYNQIKKTLDAMASNSLE 60
           ++K C  H I +CV M+ FYFG            F GGMLR SYNQIK TLD+M++NS E
Sbjct: 21  LVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMSNNSQE 80

Query: 61  W-------REYGRIEYGIDRNVMVVLQGQVTKINKLLKSMPLSQVNAAGSYV 93
           W       R  GR + G+D++V+VVLQGQ+  +N LL+SM LSQVNAA +Y+
Sbjct: 81  WDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTLSQVNAANNYI 132

BLAST of IVF0012737 vs. NCBI nr
Match: KAA0046468.1 (hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa] >TYJ97743.1 hypothetical protein E5676_scaffold1251G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 9.27e-19
Identity = 50/102 (49.02%), Postives = 60/102 (58.82%), Query Frame = 0

Query: 1   MIKRCLHHCILKCVLMDQFYFG------------FTGGMLRLSYNQIKKTLDAMASNSLE 60
           ++K CLHH I KCVLM++FYF             F GG+LR SYNQ K  LD M SNS E
Sbjct: 38  LVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQE 97

Query: 61  WRE------------YGRIEYGIDRNVMVVLQGQVTKINKLL 78
            R+             GR + G+DRN MV LQGQVT++NKLL
Sbjct: 98  CRDDCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKLL 139

BLAST of IVF0012737 vs. NCBI nr
Match: KAA0067857.1 (hypothetical protein E6C27_scaffold2484G00700 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.23e-14
Identity = 42/89 (47.19%), Postives = 50/89 (56.18%), Query Frame = 0

Query: 1  MIKRCLHHCILKCVLMDQFYFG------------FTGGMLRLSYNQIKKTLDAMASNSLE 60
          MIK C HHCI + VLM+QFYFG            F GGMLR S NQIK TLD M +    
Sbjct: 1  MIKACPHHCIQELVLMEQFYFGLSEDTQQTVDAVFVGGMLRSSNNQIKTTLDTMVNE--- 60

Query: 61 WREYGRIEYGIDRNVMVVLQGQVTKINKL 77
                   G+DRN MV L+G+  K++KL
Sbjct: 61 ---------GVDRNTMVALEGKFVKMSKL 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CC264.9e-2154.17Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L0Y49.1e-2050.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131150 PE=4 SV=1[more]
A0A0A0K6F91.3e-1850.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1[more]
A0A5A7TUE14.4e-1449.02Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D2S05.9e-1156.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KGN53801.14.78e-2650.83hypothetical protein Csa_014772 [Cucumis sativus][more]
KAA0048713.11.85e-2554.17hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916... [more]
KGN44484.13.82e-2450.00hypothetical protein Csa_015918 [Cucumis sativus][more]
KAA0046468.19.27e-1949.02hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa] >TYJ9774... [more]
KAA0067857.12.23e-1447.19hypothetical protein E6C27_scaffold2484G00700 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0012737.1IVF0012737.1mRNA