IVF0012730 (gene) Melon (IVF77) v1

Overview
NameIVF0012730
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationtig00000656: 338160 .. 339430 (+)
RNA-Seq ExpressionIVF0012730
SyntenyIVF0012730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAACTGCTTTTCTTTGCTAATTTGCTTTTCATTGCCTCTACTACTGTTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAGTTCTCGTTCCCATTATTTTATCATTATTATAAATGAATATATCATGAAATCTATTTTACACAAGCAAGAAACATAAACTTCTCTTTAAAAGAAATGGGAGTCGAGTTGGTAAGAAAAAGATGGTGGTTGTTTGGAGGGGTGATATGAACACAACAAGGTATCTGGGGCGATCGTAAAATATGAGAACGATGGAAAAAAGAGGGTTGAGTTGAACAAAATGCGTTCAGATGTTAAAATCAAGCCCAAAACGTTTAATTAAAACATGAGTTTTGGATTACATTATACTAAAAATTCATTACATTATGGATGTCCAAATGCCTCCATAGTTTCATTTTGAATTTTGTTAAATCATCAATTCACTAATTGATGTAAAAGAGCCGATAATGAACAAAGGCTAATTTAATATTACACTATAAGAAATTGGAGATCTCCCAACACATCAAGTCATTGGAATGTATACAAAAAGGCATTGGGAATAGTTCTCCCGACAACTAAATGGTCGTTGGAGATGTGGTCAGGAAAACCACGTCGGAAGAGGAACTTCCCGACGTAGAGAATGCAAGGTGTCGAGAATTTATCATTCTCGATACAGCATCAAGAGTTCTGATCTCCCGACGCATTTCATTTAGGCGTCGGAAACATATCATTCTAGACAACGCAATCGTGTGTCGGGAATGATCCTAGCACTCGAAGCGTAAATGAAACCGTTCGAAATTGGGGAGCTTCAACTCCCGACAACGTGCATTGAAAGTTGTTATTTTGAATTTATTTTTTTAGGTATAATCTGTATTATTTCTTTTTTTAGTTTCGATCTAAAATTCAATAAAATAGTCGACCAAAGCGTTATAAATTAATTAATAACTAATTTGAAATACGAAAGTTGGATCCACAAAATTAGAACATATTTCATAACAAACGTGAAACAAATATTTCATAACATTGTGCTTTTGAAATAATAAATACATAATGTACGTCATCATTTAACAAATTGTTTTCGTAAGATTTTAGGTAAAATGGGTGTGGAGTACAAAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTAAATAGACCAACTTCTGATGATGTCCCATGGGGTGGAGGCTATGTTCATCGTCCTCCAATCTTGAACAGCCCATGA

mRNA sequence

ATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAACTGCTTTTCTTTGCTAATTTGCTTTTCATTGCCTCTACTACTGTTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAAATGGGTGTGGAGTACAAAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTAAATAGACCAACTTCTGATGATGTCCCATGGGGTGGAGGCTATGTTCATCGTCCTCCAATCTTGAACAGCCCATGA

Coding sequence (CDS)

ATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAACTGCTTTTCTTTGCTAATTTGCTTTTCATTGCCTCTACTACTGTTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAAATGGGTGTGGAGTACAAAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTAAATAGACCAACTTCTGATGATGTCCCATGGGGTGGAGGCTATGTTCATCGTCCTCCAATCTTGAACAGCCCATGA

Protein sequence

MASSPMKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPKVNRPTSDDVPWGGGYVHRPPILNSP
Homology
BLAST of IVF0012730 vs. ExPASy TrEMBL
Match: A0A5D3DJ60 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00330 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-39
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0

Query: 1  MASSPMKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPK 60
          MASSPMKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPK
Sbjct: 1  MASSPMKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPK 60

Query: 61 VNRPTSDDVPWGGGYVHRPPILNSP 86
          VNRPTSDDVPWGGGYVHRPPILNSP
Sbjct: 61 VNRPTSDDVPWGGGYVHRPPILNSP 85

BLAST of IVF0012730 vs. ExPASy TrEMBL
Match: A0A0A0L8B2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.3e-32
Identity = 73/85 (85.88%), Postives = 77/85 (90.59%), Query Frame = 0

Query: 1  MASSPMKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPK 60
          MASSPMKISLMLKLLFFA LLFIA TT+SATNNIPLLHKPPIRKM V Y+KGEKAVVVPK
Sbjct: 1  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 60

Query: 61 VNRPTSDDVPWGGGYVHRPPILNSP 86
          V +PTS D PWGGGYV RPPILN+P
Sbjct: 61 VYKPTSADFPWGGGYVRRPPILNNP 85

BLAST of IVF0012730 vs. ExPASy TrEMBL
Match: A0A0A0L653 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.0e-14
Identity = 49/86 (56.98%), Postives = 64/86 (74.42%), Query Frame = 0

Query: 3  SSPMKISLMLKLLFFANLLFIASTTVSATNNI--PLLHKPPIRKMGVEYKKGE-KAVVVP 62
          +SP +I L+LKLLFF+ LL    +TVS TNN+  PL HKP IRK+GV+ K  + KA VVP
Sbjct: 2  ASPWRIPLLLKLLFFSLLLIF--STVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVP 61

Query: 63 KVNRPTSDDVPWGGGYVHRPPILNSP 86
          +V +PTS+D PWGGGY+H  P L++P
Sbjct: 62 RVIKPTSEDFPWGGGYIH--PHLSNP 83

BLAST of IVF0012730 vs. NCBI nr
Match: KAA0067663.1 (hypothetical protein E6C27_scaffold70G00320 [Cucumis melo var. makuwa] >TYK23667.1 hypothetical protein E5676_scaffold577G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (431), Expect = 2.72e-53
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0

Query: 1  MASSPMKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPK 60
          MASSPMKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPK
Sbjct: 1  MASSPMKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPK 60

Query: 61 VNRPTSDDVPWGGGYVHRPPILNSP 85
          VNRPTSDDVPWGGGYVHRPPILNSP
Sbjct: 61 VNRPTSDDVPWGGGYVHRPPILNSP 85

BLAST of IVF0012730 vs. NCBI nr
Match: KAE8650427.1 (hypothetical protein Csa_010020 [Cucumis sativus])

HSP 1 Score: 145 bits (367), Expect = 1.79e-43
Identity = 73/85 (85.88%), Postives = 77/85 (90.59%), Query Frame = 0

Query: 1  MASSPMKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPK 60
          MASSPMKISLMLKLLFFA LLFIA TT+SATNNIPLLHKPPIRKM V Y+KGEKAVVVPK
Sbjct: 5  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 64

Query: 61 VNRPTSDDVPWGGGYVHRPPILNSP 85
          V +PTS D PWGGGYV RPPILN+P
Sbjct: 65 VYKPTSADFPWGGGYVRRPPILNNP 89

BLAST of IVF0012730 vs. NCBI nr
Match: KAE8650426.1 (hypothetical protein Csa_009889 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 1.42e-19
Identity = 49/86 (56.98%), Postives = 64/86 (74.42%), Query Frame = 0

Query: 3  SSPMKISLMLKLLFFANLLFIASTTVSATNNI--PLLHKPPIRKMGVEYKKGE-KAVVVP 62
          +SP +I L+LKLLFF+ LL  +  TVS TNN+  PL HKP IRK+GV+ K  + KA VVP
Sbjct: 6  ASPWRIPLLLKLLFFSLLLIFS--TVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVP 65

Query: 63 KVNRPTSDDVPWGGGYVHRPPILNSP 85
          +V +PTS+D PWGGGY+H  P L++P
Sbjct: 66 RVIKPTSEDFPWGGGYIH--PHLSNP 87

BLAST of IVF0012730 vs. NCBI nr
Match: KAG7014832.1 (hypothetical protein SDJN02_22461 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.6 bits (161), Expect = 3.23e-12
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 0

Query: 7  KISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPKVNRPTS 66
          +ISL+L+LLFFA LL +AST  SA N+  LLH P   KM +EY +  K        +PT+
Sbjct: 8  RISLLLRLLFFA-LLLVASTA-SAANSKALLHNPRTPKMAMEYGQVGKGTS----KKPTA 67

Query: 67 DDVPWGGGYVHRPPILNS 84
          DDVPWGGGYV  PPIL++
Sbjct: 68 DDVPWGGGYV--PPILSN 77

BLAST of IVF0012730 vs. NCBI nr
Match: KAG6600177.1 (hypothetical protein SDJN03_05410, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 53.9 bits (128), Expect = 2.68e-07
Identity = 38/68 (55.88%), Postives = 42/68 (61.76%), Query Frame = 0

Query: 8  ISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPKVNRPTSD 67
          IS +LKLL    LL IAS  +SA +N P      IRKMG+EYK   KAVVV K  R  S 
Sbjct: 7  ISFVLKLLVCFALLLIASP-ISAMDNTPR-----IRKMGMEYKLVGKAVVVAKPVRQLSA 66

Query: 68 DVPWGGGY 75
          D PWGGGY
Sbjct: 67 DSPWGGGY 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DJ601.2e-39100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L8B23.3e-3285.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1[more]
A0A0A0L6534.0e-1456.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0067663.12.72e-53100.00hypothetical protein E6C27_scaffold70G00320 [Cucumis melo var. makuwa] >TYK23667... [more]
KAE8650427.11.79e-4385.88hypothetical protein Csa_010020 [Cucumis sativus][more]
KAE8650426.11.42e-1956.98hypothetical protein Csa_009889 [Cucumis sativus][more]
KAG7014832.13.23e-1253.85hypothetical protein SDJN02_22461 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6600177.12.68e-0755.88hypothetical protein SDJN03_05410, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0012730.1IVF0012730.1mRNA