IVF0012714 (gene) Melon (IVF77) v1

Overview


Name	IVF0012714
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related pol polyprotein from transposon tnt 1-94
Location	chr10: 8270269 .. 8271011 (-)
RNA-Seq Expression	IVF0012714
Synteny	IVF0012714

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTAGAAATGATAGATGCTAATGTTGATGCTAACATTGATAAAGCAACCGCTTGTGCAAAAGAGAAAGAGGTAAAATTATTGAAGCTTCTAGTTCTTTTACTTTTATTTTTTCCCAAGACTATTATGTTTATGAGTGAAAATTCTATCAATGGTAGAATTGTATCAGTGATACACTGTTCTTTCTATGATTTAAGTCTATTAGTGATACGGTTCTATCAGTGATAAACTATTCTTAGATCTCAAGTGTGATTGAAAAGTTTATCAATGATAGGATATTGACAGTTTCTATAATTCTTTTCATTGCAATACTAATATTAATATCTGCAAAAGATTGAGGATAACGAGGAAGATGATGATAATCATCATGAAAATAAGTCAAAAATGGTGCATGACACATCAAACAAAGTGAAGGTATTATAATAATCACATTTTGTTGTTTTATGATAGACTTAATGTGTATATGTATAAACTCTAATTCAATATTATTTTTTCAGGTTGTTCAAGAAAAGGAAAAAGTGAAAATTATGGAAATAGCGAAGAATATTGAAAATGCTAGGCCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAGCAAAAGAAAGAAAAAGATCATCAAAAGAATGCAAGAGGCAAGAAGAATGATTCTCCAAAACCAACAAGACATTCTCCTATAATAAAAGATCTTGCACCTAGTTTTGCTTTGCAAATATCTCAATTATAA

mRNA sequence

ATGAGTTTAGAAATGATAGATGCTAATGTTGATGCTAACATTGATAAAGCAACCGCTTGTGCAAAAGAGAAAGAGATTGAGGATAACGAGGAAGATGATGATAATCATCATGAAAATAAGTCAAAAATGGTGCATGACACATCAAACAAAGTGAAGGTTGTTCAAGAAAAGGAAAAAGTGAAAATTATGGAAATAGCGAAGAATATTGAAAATGCTAGGCCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAGCAAAAGAAAGAAAAAGATCATCAAAAGAATGCAAGAGGCAAGAAGAATGATTCTCCAAAACCAACAAGACATTCTCCTATAATAAAAGATCTTGCACCTAGTTTTGCTTTGCAAATATCTCAATTATAA

Coding sequence (CDS)

ATGAGTTTAGAAATGATAGATGCTAATGTTGATGCTAACATTGATAAAGCAACCGCTTGTGCAAAAGAGAAAGAGATTGAGGATAACGAGGAAGATGATGATAATCATCATGAAAATAAGTCAAAAATGGTGCATGACACATCAAACAAAGTGAAGGTTGTTCAAGAAAAGGAAAAAGTGAAAATTATGGAAATAGCGAAGAATATTGAAAATGCTAGGCCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAGCAAAAGAAAGAAAAAGATCATCAAAAGAATGCAAGAGGCAAGAAGAATGATTCTCCAAAACCAACAAGACATTCTCCTATAATAAAAGATCTTGCACCTAGTTTTGCTTTGCAAATATCTCAATTATAA

Protein sequence

MSLEMIDANVDANIDKATACAKEKEIEDNEEDDDNHHENKSKMVHDTSNKVKVVQEKEKVKIMEIAKNIENARPKRQPKPSKKVLENVKEQKKEKDHQKNARGKKNDSPKPTRHSPIIKDLAPSFALQISQL

Homology

[Close]

BLAST of IVF0012714 vs. ExPASy TrEMBL
Match: A0A5A7T785 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold610G00170 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.0e-60
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MSLEMIDANVDANIDKATACAKEKEIEDNEEDDDNHHENKSKMVHDTSNKVKVVQEKEKV 60
           MSLEMIDANVDANIDKATACAKEKEIEDNEEDDDNHHENKSKMVHDTSNKVKVVQEKEKV
Sbjct: 1   MSLEMIDANVDANIDKATACAKEKEIEDNEEDDDNHHENKSKMVHDTSNKVKVVQEKEKV 60

Query: 61  KIMEIAKNIENARPKRQPKPSKKVLENVKEQKKEKDHQKNARGKKNDSPKPTRHSPIIKD 120
           KIMEIAKNIENARPKRQPKPSKKVLENVKEQKKEKDHQKNARGKKNDSPKPTRHSPIIKD
Sbjct: 61  KIMEIAKNIENARPKRQPKPSKKVLENVKEQKKEKDHQKNARGKKNDSPKPTRHSPIIKD 120

Query: 121 LAPSFALQISQL 133
           LAPSFALQISQL
Sbjct: 121 LAPSFALQISQL 132

[Close]

BLAST of IVF0012714 vs. ExPASy TrEMBL
Match: A0A5A7VDY1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00110 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 8.1e-38
Identity = 103/134 (76.87%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MSLEMIDANVDANIDKATACAKEKEIEDNE--EDDDNHHENKSKMVHDTSNKVKVVQEKE 60
           +SLEMIDA+VD          KEKEIEDNE  E+DDNH ENKSKMVHDTSNKVKVVQEK 
Sbjct: 98  ISLEMIDADVD----------KEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKA 157

Query: 61  KVKIMEIAKNIENARPKRQPKPSKKVLENVKEQKKEKDHQKNARGKKNDSPKPTRHSPII 120
           KVKIMEIA NIE ARPKRQPKPSKKVLENVKE       QKN RGKKNDSPKPT+HSP I
Sbjct: 158 KVKIMEIATNIEKARPKRQPKPSKKVLENVKE-------QKNVRGKKNDSPKPTKHSPRI 214

Query: 121 KDLAPSFALQISQL 133
           +DLAPSF LQISQL
Sbjct: 218 RDLAPSFDLQISQL 214

[Close]

BLAST of IVF0012714 vs. ExPASy TrEMBL
Match: A0A5A7VIA9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1081G00090 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.8e-37
Identity = 103/134 (76.87%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MSLEMIDANVDANIDKATACAKEKEIEDNE--EDDDNHHENKSKMVHDTSNKVKVVQEKE 60
           +SLEMIDA+VD          KEKEIEDNE  E+DDNH ENKSKMVHDTSNKVKVVQEK 
Sbjct: 222 ISLEMIDADVD----------KEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKA 281

Query: 61  KVKIMEIAKNIENARPKRQPKPSKKVLENVKEQKKEKDHQKNARGKKNDSPKPTRHSPII 120
           KVKIMEIA NIE ARPKRQPKPSKKVLENVKE       QKN RGKKNDSPKPTR+SP I
Sbjct: 282 KVKIMEIATNIEKARPKRQPKPSKKVLENVKE-------QKNVRGKKNDSPKPTRYSPRI 338

Query: 121 KDLAPSFALQISQL 133
           +DLAPSF LQISQL
Sbjct: 342 RDLAPSFDLQISQL 338

[Close]

BLAST of IVF0012714 vs. ExPASy TrEMBL
Match: A0A5D3CTS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00380 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.8e-37
Identity = 103/134 (76.87%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MSLEMIDANVDANIDKATACAKEKEIEDNE--EDDDNHHENKSKMVHDTSNKVKVVQEKE 60
           +SLEMIDA+VD          KEKEIEDNE  E+DDNH ENKSKMVHDTSNKVKVVQEK 
Sbjct: 98  ISLEMIDADVD----------KEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKA 157

Query: 61  KVKIMEIAKNIENARPKRQPKPSKKVLENVKEQKKEKDHQKNARGKKNDSPKPTRHSPII 120
           KVKIMEIA NIE ARPKRQPKPSKKVLENVKE       QKN RGKKNDSPKPTR+SP I
Sbjct: 158 KVKIMEIATNIEKARPKRQPKPSKKVLENVKE-------QKNVRGKKNDSPKPTRYSPRI 214

Query: 121 KDLAPSFALQISQL 133
           +DLAPSF LQISQL
Sbjct: 218 RDLAPSFDLQISQL 214

[Close]

BLAST of IVF0012714 vs. ExPASy TrEMBL
Match: A0A5D3DFX6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3009G00010 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.8e-37
Identity = 103/134 (76.87%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MSLEMIDANVDANIDKATACAKEKEIEDNE--EDDDNHHENKSKMVHDTSNKVKVVQEKE 60
           +SLEMIDA+VD          KEKEIEDNE  E+DDNH ENKSKMVHDTSNKVKVVQEK 
Sbjct: 222 ISLEMIDADVD----------KEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKA 281

Query: 61  KVKIMEIAKNIENARPKRQPKPSKKVLENVKEQKKEKDHQKNARGKKNDSPKPTRHSPII 120
           KVKIMEIA NIE ARPKRQPKPSKKVLENVKE       QKN RGKKNDSPKPTR+SP I
Sbjct: 282 KVKIMEIATNIEKARPKRQPKPSKKVLENVKE-------QKNVRGKKNDSPKPTRYSPRI 338

Query: 121 KDLAPSFALQISQL 133
           +DLAPSF LQISQL
Sbjct: 342 RDLAPSFDLQISQL 338

[Close]

BLAST of IVF0012714 vs. NCBI nr
Match: KAA0037325.1 (hypothetical protein E6C27_scaffold278G00130 [Cucumis melo var. makuwa] >TYK24121.1 hypothetical protein E5676_scaffold610G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 239 bits (611), Expect = 2.95e-79
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MSLEMIDANVDANIDKATACAKEKEIEDNEEDDDNHHENKSKMVHDTSNKVKVVQEKEKV 60
           MSLEMIDANVDANIDKATACAKEKEIEDNEEDDDNHHENKSKMVHDTSNKVKVVQEKEKV
Sbjct: 1   MSLEMIDANVDANIDKATACAKEKEIEDNEEDDDNHHENKSKMVHDTSNKVKVVQEKEKV 60

Query: 61  KIMEIAKNIENARPKRQPKPSKKVLENVKEQKKEKDHQKNARGKKNDSPKPTRHSPIIKD 120
           KIMEIAKNIENARPKRQPKPSKKVLENVKEQKKEKDHQKNARGKKNDSPKPTRHSPIIKD
Sbjct: 61  KIMEIAKNIENARPKRQPKPSKKVLENVKEQKKEKDHQKNARGKKNDSPKPTRHSPIIKD 120

Query: 121 LAPSFALQISQL 132
           LAPSFALQISQL
Sbjct: 121 LAPSFALQISQL 132

[Close]

BLAST of IVF0012714 vs. NCBI nr
Match: KAA0065297.1 (hypothetical protein E6C27_scaffold1023G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 165 bits (417), Expect = 1.35e-48
Identity = 103/134 (76.87%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MSLEMIDANVDANIDKATACAKEKEIEDNEE--DDDNHHENKSKMVHDTSNKVKVVQEKE 60
           +SLEMIDA+VD          KEKEIEDNEE  +DDNH ENKSKMVHDTSNKVKVVQEK 
Sbjct: 98  ISLEMIDADVD----------KEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKA 157

Query: 61  KVKIMEIAKNIENARPKRQPKPSKKVLENVKEQKKEKDHQKNARGKKNDSPKPTRHSPII 120
           KVKIMEIA NIE ARPKRQPKPSKKVLENVKEQK       N RGKKNDSPKPT+HSP I
Sbjct: 158 KVKIMEIATNIEKARPKRQPKPSKKVLENVKEQK-------NVRGKKNDSPKPTKHSPRI 214

Query: 121 KDLAPSFALQISQL 132
           +DLAPSF LQISQL
Sbjct: 218 RDLAPSFDLQISQL 214

[Close]

BLAST of IVF0012714 vs. NCBI nr
Match: TYK15261.1 (hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 164 bits (414), Expect = 3.85e-48
Identity = 103/134 (76.87%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MSLEMIDANVDANIDKATACAKEKEIEDNEE--DDDNHHENKSKMVHDTSNKVKVVQEKE 60
           +SLEMIDA+VD          KEKEIEDNEE  +DDNH ENKSKMVHDTSNKVKVVQEK 
Sbjct: 98  ISLEMIDADVD----------KEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKA 157

Query: 61  KVKIMEIAKNIENARPKRQPKPSKKVLENVKEQKKEKDHQKNARGKKNDSPKPTRHSPII 120
           KVKIMEIA NIE ARPKRQPKPSKKVLENVKEQK       N RGKKNDSPKPTR+SP I
Sbjct: 158 KVKIMEIATNIEKARPKRQPKPSKKVLENVKEQK-------NVRGKKNDSPKPTRYSPRI 214

Query: 121 KDLAPSFALQISQL 132
           +DLAPSF LQISQL
Sbjct: 218 RDLAPSFDLQISQL 214

[Close]

BLAST of IVF0012714 vs. NCBI nr
Match: KAA0031317.1 (uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0034561.1 uncharacterized protein E6C27_scaffold65G005770 [Cucumis melo var. makuwa] >KAA0035329.1 uncharacterized protein E6C27_scaffold228G001300 [Cucumis melo var. makuwa] >KAA0037560.1 uncharacterized protein E6C27_scaffold277G001820 [Cucumis melo var. makuwa] >KAA0038033.1 uncharacterized protein E6C27_scaffold36G002310 [Cucumis melo var. makuwa])

HSP 1 Score: 164 bits (414), Expect = 1.12e-46
Identity = 103/134 (76.87%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MSLEMIDANVDANIDKATACAKEKEIEDNEE--DDDNHHENKSKMVHDTSNKVKVVQEKE 60
           +SLEMIDA+VD          KEKEIEDNEE  +DDNH ENKSKMVHDTSNKVKVVQEK 
Sbjct: 222 ISLEMIDADVD----------KEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKA 281

Query: 61  KVKIMEIAKNIENARPKRQPKPSKKVLENVKEQKKEKDHQKNARGKKNDSPKPTRHSPII 120
           KVKIMEIA NIE ARPKRQPKPSKKVLENVKEQK       N RGKKNDSPKPTR+SP I
Sbjct: 282 KVKIMEIATNIEKARPKRQPKPSKKVLENVKEQK-------NVRGKKNDSPKPTRYSPRI 338

Query: 121 KDLAPSFALQISQL 132
           +DLAPSF LQISQL
Sbjct: 342 RDLAPSFDLQISQL 338

[Close]

BLAST of IVF0012714 vs. NCBI nr
Match: TYK22453.1 (uncharacterized protein E5676_scaffold3009G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 164 bits (414), Expect = 1.12e-46
Identity = 103/134 (76.87%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MSLEMIDANVDANIDKATACAKEKEIEDNEE--DDDNHHENKSKMVHDTSNKVKVVQEKE 60
           +SLEMIDA+VD          KEKEIEDNEE  +DDNH ENKSKMVHDTSNKVKVVQEK 
Sbjct: 222 ISLEMIDADVD----------KEKEIEDNEETEEDDNHRENKSKMVHDTSNKVKVVQEKA 281

Query: 61  KVKIMEIAKNIENARPKRQPKPSKKVLENVKEQKKEKDHQKNARGKKNDSPKPTRHSPII 120
           KVKIMEIA NIE ARPKRQPKPSKKVLENVKEQK       N RGKKNDSPKPTR+SP I
Sbjct: 282 KVKIMEIATNIEKARPKRQPKPSKKVLENVKEQK-------NVRGKKNDSPKPTRYSPRI 338

Query: 121 KDLAPSFALQISQL 132
           +DLAPSF LQISQL
Sbjct: 342 RDLAPSFDLQISQL 338

The following BLAST results are available for this feature:

BLAST of IVF0012714 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012714 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T785	2.0e-60	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VDY1	8.1e-38	76.87	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VIA9	1.8e-37	76.87	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CTS8	1.8e-37	76.87	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DFX6	1.8e-37	76.87	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0012714 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037325.1	2.95e-79	100.00	hypothetical protein E6C27_scaffold278G00130 [Cucumis melo var. makuwa] >TYK2412...	[more]
KAA0065297.1	1.35e-48	76.87	hypothetical protein E6C27_scaffold1023G00110 [Cucumis melo var. makuwa]	[more]
TYK15261.1	3.85e-48	76.87	hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa]	[more]
KAA0031317.1	1.12e-46	76.87	uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0...	[more]
TYK22453.1	1.12e-46	76.87	uncharacterized protein E5676_scaffold3009G00010 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0012714 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012714.1	IVF0012714.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome