IVF0012693 (gene) Melon (IVF77) v1

Overview


Name	IVF0012693
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	transformer-2 protein homolog alpha-like
Location	chr10: 856745 .. 857374 (+)
RNA-Seq Expression	IVF0012693
Synteny	IVF0012693

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAAGAAGAAGAAGAACAGAGATTGCATTGATTTTGATTCTGATATATTCATCTATGGTGCATTCATTTGCTTTCAAACAACTCTTTGTAACAGGTCATTTTCTTTATTATAATTCTGTCCCTTTTTTTTACTACAATAATCGAATGTCGAAAAGAATCGAACTTTATTTCCACCTCTGTAATAGAATGCAATCTCGTTGTAGAGTTAGGCCTGCTTTTAACATTTTTCCCATCTTCTTCCTCCACTTTTCTTTATTATTAAACTCTTGAATCGTTTTTTTTTAAATGACTTTATTTTCAAAACTAAACAGAACAAAAATACCCAAAAATATATTTAGATGTTCAAAGAAATTGATATGTGTGTGTACTGCAGACAGTATTAAGCACCAAGAAAGTGAGCATATGGAGAAACATGGTAGAAGATACAATATAGAGGGTCGACATGGTTATACAAATGGGATCCCAATACATGATATAACAATTACCCGCGGTGGAGGAAGAGGCGGCGGCGGCGGCGGCAGAGGAGGAGGTAATGGTGCCGGAGGTATTCATGATCGAAACTACATGAAGTTTATAGCAGCTGCAGTTTCCATATCAGTTGCATATTTGTGTGGACTTATTTGA

mRNA sequence

ATGGGAAGAAGAAGAAGAAGAACAGAGATTGCATTGATTTTGATTCTGATATATTCATCTATGGTGCATTCATTTGCTTTCAAACAACTCTTTGTAACAGACAGTATTAAGCACCAAGAAAGTGAGCATATGGAGAAACATGGTAGAAGATACAATATAGAGGGTCGACATGGTTATACAAATGGGATCCCAATACATGATATAACAATTACCCGCGGTGGAGGAAGAGGCGGCGGCGGCGGCGGCAGAGGAGGAGGTAATGGTGCCGGAGGTATTCATGATCGAAACTACATGAAGTTTATAGCAGCTGCAGTTTCCATATCAGTTGCATATTTGTGTGGACTTATTTGA

Coding sequence (CDS)

ATGGGAAGAAGAAGAAGAAGAACAGAGATTGCATTGATTTTGATTCTGATATATTCATCTATGGTGCATTCATTTGCTTTCAAACAACTCTTTGTAACAGACAGTATTAAGCACCAAGAAAGTGAGCATATGGAGAAACATGGTAGAAGATACAATATAGAGGGTCGACATGGTTATACAAATGGGATCCCAATACATGATATAACAATTACCCGCGGTGGAGGAAGAGGCGGCGGCGGCGGCGGCAGAGGAGGAGGTAATGGTGCCGGAGGTATTCATGATCGAAACTACATGAAGTTTATAGCAGCTGCAGTTTCCATATCAGTTGCATATTTGTGTGGACTTATTTGA

Protein sequence

MGRRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIAAAVSISVAYLCGLI

Homology

[Close]

BLAST of IVF0012693 vs. ExPASy TrEMBL
Match: A0A1S3BFU5 (transformer-2 protein homolog alpha-like OS=Cucumis melo OX=3656 GN=LOC103489385 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.4e-55
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MGRRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYT 60
           MGRRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYT
Sbjct: 1   MGRRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYT 60

Query: 61  NGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIAAAVSISVAYLCGLI 117
           NGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIAAAVSISVAYLCGLI
Sbjct: 61  NGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIAAAVSISVAYLCGLI 116

[Close]

BLAST of IVF0012693 vs. ExPASy TrEMBL
Match: A0A0A0KWM3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613630 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.6e-35
Identity = 94/118 (79.66%), Postives = 101/118 (85.59%), Query Frame = 0


Query: 1   MGRRRRRTEIALILILIYSSMV-HSFAFKQLFVTDSIKHQESEHMEK-HGRRYNIEGRHG 60
           MGRR+    IALILILIYSSM+  S AFKQLF+TD+  HQESEHMEK +GRRYN+EGRHG
Sbjct: 1   MGRRK----IALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHG 60

Query: 61  YTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIAAAVSISVAYLCGLI 117
           YTNGIP H I ITRGGGRGGGGGGR  GNGA GIHD+N MKFIAAAVSISVAYLCGLI
Sbjct: 61  YTNGIPTH-IAITRGGGRGGGGGGR--GNGAAGIHDQNCMKFIAAAVSISVAYLCGLI 111

[Close]

BLAST of IVF0012693 vs. ExPASy TrEMBL
Match: A0A0A0KRC8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613620 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.9e-30
Identity = 89/114 (78.07%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 5   RRRTEIALILILIYSSMV-HSFAFKQLFVTDSIKHQESEHMEK-HGRRYNIEGRHGYTNG 64
           RRRTE ALILILIYSSM+  SFAFKQL +TD+ KHQESEHMEK +GRRYNIEGRHGYT+G
Sbjct: 3   RRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYTDG 62

Query: 65  IPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIAAAVSISVAYLCGLI 117
           IP H I IT   GRGG G    GGNGA GIHD+N MKFIAAAVSISVAYLCGLI
Sbjct: 63  IPEH-IAITHSEGRGGVGVS-VGGNGAAGIHDQNCMKFIAAAVSISVAYLCGLI 114

[Close]

BLAST of IVF0012693 vs. ExPASy TrEMBL
Match: A0A6J1J9S2 (glycine-rich protein DOT1-like OS=Cucurbita maxima OX=3661 GN=LOC111484806 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.7e-10
Identity = 54/92 (58.70%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 3  RRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYTNG 62
          RRRRR E+ALIL+L++SSMV SFAFKQLF TD  + QESEH EK+G+           NG
Sbjct: 5  RRRRRREMALILMLLWSSMVASFAFKQLFTTDIAEFQESEHREKYGK-----------NG 64

Query: 63 --IPIHDITITRGGGRGGGGGGRGG-GNGAGG 92
            IP+H I I  GGG G GGGGRGG G G+ G
Sbjct: 65 VVIPMH-IVIGLGGGGGSGGGGRGGSGGGSSG 84

[Close]

BLAST of IVF0012693 vs. NCBI nr
Match: XP_008446753.1 (PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo])

HSP 1 Score: 224 bits (570), Expect = 1.62e-73
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MGRRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYT 60
           MGRRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYT
Sbjct: 1   MGRRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYT 60

Query: 61  NGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIAAAVSISVAYLCGLI 116
           NGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIAAAVSISVAYLCGLI
Sbjct: 61  NGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIAAAVSISVAYLCGLI 116

[Close]

BLAST of IVF0012693 vs. NCBI nr
Match: KGN52711.2 (hypothetical protein Csa_008218, partial [Cucumis sativus])

HSP 1 Score: 152 bits (385), Expect = 2.35e-45
Identity = 92/118 (77.97%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MGRRRRRTEIALILILIYSSMV-HSFAFKQLFVTDSIKHQESEHMEK-HGRRYNIEGRHG 60
           MGRR+    IALILILIYSSM+  S AFKQLF+TD+  HQESEHMEK +GRRYN+EGRHG
Sbjct: 3   MGRRK----IALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHG 62

Query: 61  YTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIAAAVSISVAYLCGLI 116
           YTNGIP H I ITRGGGRGGGGGGRG  NGA GIHD+N M+ IAAAVSISVAYLCGLI
Sbjct: 63  YTNGIPTH-IAITRGGGRGGGGGGRG--NGAAGIHDQNCMELIAAAVSISVAYLCGLI 113

[Close]

BLAST of IVF0012693 vs. NCBI nr
Match: KGN52185.1 (hypothetical protein Csa_009431 [Cucumis sativus])

HSP 1 Score: 143 bits (361), Expect = 1.10e-41
Identity = 89/114 (78.07%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 5   RRRTEIALILILIYSSMV-HSFAFKQLFVTDSIKHQESEHMEK-HGRRYNIEGRHGYTNG 64
           RRRTE ALILILIYSSM+  SFAFKQL +TD+ KHQESEHMEK +GRRYNIEGRHGYT+G
Sbjct: 3   RRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYTDG 62

Query: 65  IPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIAAAVSISVAYLCGLI 116
           IP H I IT   GRGG G   GG NGA GIHD+N MKFIAAAVSISVAYLCGLI
Sbjct: 63  IPEH-IAITHSEGRGGVGVSVGG-NGAAGIHDQNCMKFIAAAVSISVAYLCGLI 114

[Close]

BLAST of IVF0012693 vs. NCBI nr
Match: XP_022987217.1 (glycine-rich protein DOT1-like [Cucurbita maxima])

HSP 1 Score: 77.4 bits (189), Expect = 5.09e-15
Identity = 50/86 (58.14%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 3  RRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYTNG 62
          RRRRR E+ALIL+L++SSMV SFAFKQLF TD  + QESEH EK+G+   +         
Sbjct: 5  RRRRRREMALILMLLWSSMVASFAFKQLFTTDIAEFQESEHREKYGKNGVV--------- 64

Query: 63 IPIHDITITRGGGRGGGGGGRGGGNG 88
          IP+H I I  GGG G GGGGRGG  G
Sbjct: 65 IPMH-IVIGLGGGGGSGGGGRGGSGG 80

[Close]

BLAST of IVF0012693 vs. NCBI nr
Match: XP_023550250.1 (glycine-rich RNA-binding protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.6 bits (166), Expect = 6.63e-12
Identity = 61/145 (42.07%), Postives = 71/145 (48.97%), Query Frame = 0


Query: 11  ALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYTNGIPIHDITI 70
           ALIL+L+ SSMV SFAFKQLF TD  + QESEH EK+G+           NG+ I    +
Sbjct: 2   ALILMLLCSSMVASFAFKQLFTTDIAEFQESEHREKYGK-----------NGVVIPMRIV 61

Query: 71  TR-------------GGGRGGGGGGRGGGN--------------------GAGGIHD--- 116
           +R             GGGRGGGGGG  GG                     G GG H    
Sbjct: 62  SRLGGGGGSGGGGSGGGGRGGGGGGSSGGGSGGRGGSPGGGSGGGGGGRGGRGGAHSGTG 121

The following BLAST results are available for this feature:

BLAST of IVF0012693 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012693 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BFU5	6.4e-55	100.00	transformer-2 protein homolog alpha-like OS=Cucumis melo OX=3656 GN=LOC103489385...	[more]
A0A0A0KWM3	9.6e-35	79.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613630 PE=4 SV=1	[more]
A0A0A0KRC8	1.9e-30	78.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613620 PE=4 SV=1	[more]
A0A6J1J9S2	3.7e-10	58.70	glycine-rich protein DOT1-like OS=Cucurbita maxima OX=3661 GN=LOC111484806 PE=4 ...	[more]

BLAST of IVF0012693 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446753.1	1.62e-73	100.00	PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo]	[more]
KGN52711.2	2.35e-45	77.97	hypothetical protein Csa_008218, partial [Cucumis sativus]	[more]
KGN52185.1	1.10e-41	78.07	hypothetical protein Csa_009431 [Cucumis sativus]	[more]
XP_022987217.1	5.09e-15	58.14	glycine-rich protein DOT1-like [Cucurbita maxima]	[more]
XP_023550250.1	6.63e-12	42.07	glycine-rich RNA-binding protein 2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of IVF0012693 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012693.1	IVF0012693.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0036297	interstrand cross-link repair
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008409	5'-3' exonuclease activity
molecular_function	GO:0017108	5'-flap endonuclease activity
molecular_function	GO:0070336	flap-structured DNA binding
molecular_function	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
molecular_function	GO:0004528	phosphodiesterase I activity
molecular_function	GO:0008270	zinc ion binding