IVF0012681 (gene) Melon (IVF77) v1

Overview


Name	IVF0012681
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	NADH-ubiquinone oxidoreductase chain 1
Location	tig00007088: 796844 .. 797150 (+)
RNA-Seq Expression	IVF0012681
Synteny	IVF0012681

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCCCCGGTCCGCTTACCAAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGGTAAAGAGCCGTAAGCGCGGTGGGGGGTGAGAGAGGACGTGCTCGTACGGTTCAAAGAAGGGTATGATCAACTCGTTGATTGTTGGGAACTTTCACTCCTCTATATTCGAAATATGCCTTTCTAGGAGCATTACGATCTGCAGCTCAAATGGTCCCTTATGAAGTCTCTATTGGTCTGATTCTTATTGTGCGCCTTGTGAGCGCGTTTGGATCCGCGAAGGCAATCGCTCGGATGTTCTCCTAA

mRNA sequence

ATGCTCCCCCGGTCCGCTTACCAAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGGTAAAGAGCCGAGCATTACGATCTGCAGCTCAAATGGTCCCTTATGAAGTCTCTATTGGTCTGATTCTTATTGTGCGCCTTGTGAGCGCGTTTGGATCCGCGAAGGCAATCGCTCGGATGTTCTCCTAA

Coding sequence (CDS)

ATGCTCCCCCGGTCCGCTTACCAAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGGTAAAGAGCCGAGCATTACGATCTGCAGCTCAAATGGTCCCTTATGAAGTCTCTATTGGTCTGATTCTTATTGTGCGCCTTGTGAGCGCGTTTGGATCCGCGAAGGCAATCGCTCGGATGTTCTCCTAA

Protein sequence

MLPRSAYQGIEREELEPELVGVKSRALRSAAQMVPYEVSIGLILIVRLVSAFGSAKAIARMFS

Homology

[Close]

BLAST of IVF0012681 vs. ExPASy Swiss-Prot
Match: P08834 (NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus OX=3654 GN=ND1 PE=2 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 6.0e-04
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 26  ALRSAAQMVPYEVSIGLILIVRLV 50
           ALRSAAQMVPYEVSIGLILIVRL+
Sbjct: 113 ALRSAAQMVPYEVSIGLILIVRLI 136

[Close]

BLAST of IVF0012681 vs. ExPASy TrEMBL
Match: A0A5A7UIF7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G00480 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.2e-16
Identity = 57/68 (83.82%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MLPRSAYQGIEREELEPELVGVKSR-----ALRSAAQMVPYEVSIGLILIVRLVSAFGSA 60
          ML RSAYQGIEREELE ELV VKSR     ALRS AQMVPYEVSI LILIVRLVSAFGSA
Sbjct: 1  MLQRSAYQGIEREELELELVRVKSRKRGGGALRSTAQMVPYEVSISLILIVRLVSAFGSA 60

Query: 61 KAIARMFS 64
          KAIA MFS
Sbjct: 61 KAIAWMFS 68

[Close]

BLAST of IVF0012681 vs. ExPASy TrEMBL
Match: A0A5A7TGE3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold45541G00060 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.1e-15
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MLPRSAYQGIEREELEPELVGVKSRALRSAAQMVPYEVSIGLILIVRL 49
          MLPRSAYQGIEREELEPELVGVKSRALRSAAQMVPYEVSIGLILIVRL
Sbjct: 1  MLPRSAYQGIEREELEPELVGVKSRALRSAAQMVPYEVSIGLILIVRL 48

[Close]

BLAST of IVF0012681 vs. ExPASy TrEMBL
Match: A0A6A1UV48 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G009968 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.0e-15
Identity = 53/75 (70.67%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 1   MLPRSAYQGIEREELEPELVGV-------------KSRALRSAAQMVPYEVSIGLILIVR 60
           MLPRSAY+GIERE+  PE VG+             ++RALRSAAQMV YEVSIGLILIVR
Sbjct: 95  MLPRSAYRGIEREDRGPEQVGLGYRAVSAVGGDRGRARALRSAAQMVSYEVSIGLILIVR 154

Query: 61  LVSAFGSAKAIARMF 63
           LVSAFGSAKAIARMF
Sbjct: 155 LVSAFGSAKAIARMF 169

[Close]

BLAST of IVF0012681 vs. ExPASy TrEMBL
Match: A0A0A0KNQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G505140 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.0e-14
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1  MLPRSAYQGIEREELEPELVGVKSRALRSAAQMVPYEVSIGLILIVRLVSAFGSAKAIAR 60
          ML  SAY+GIEREELE ELVG+KSRALRS+AQ V YEV IGLILIVRLVSAFGS KAI  
Sbjct: 1  MLLWSAYRGIEREELELELVGIKSRALRSSAQTVSYEVFIGLILIVRLVSAFGSTKAITE 60

Query: 61 MFS 64
          +FS
Sbjct: 61 VFS 63

[Close]

BLAST of IVF0012681 vs. ExPASy TrEMBL
Match: B9TAM6 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_2130530 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.3e-14
Identity = 52/75 (69.33%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 1   MLPRSAYQGIEREELEPELVGV-------------KSRALRSAAQMVPYEVSIGLILIVR 60
           MLP+SAY+GIERE+  PE VG+             ++RALRSAAQMV YEVSIGLILIVR
Sbjct: 64  MLPQSAYRGIEREDPGPEQVGLGYRAVSAMGGDRGRARALRSAAQMVSYEVSIGLILIVR 123

Query: 61  LVSAFGSAKAIARMF 63
           LVSAFGSAKAIARMF
Sbjct: 124 LVSAFGSAKAIARMF 138

[Close]

BLAST of IVF0012681 vs. NCBI nr
Match: KAA0040731.1 (hypothetical protein E6C27_scaffold45541G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 2.83e-21
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MLPRSAYQGIEREELEPELVGVKSRALRSAAQMVPYEVSIGLILIVRL 48
          MLPRSAYQGIEREELEPELVGVKSRALRSAAQMVPYEVSIGLILIVRL
Sbjct: 1  MLPRSAYQGIEREELEPELVGVKSRALRSAAQMVPYEVSIGLILIVRL 48

[Close]

BLAST of IVF0012681 vs. NCBI nr
Match: KAA0055673.1 (hypothetical protein E6C27_scaffold181G00480 [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 7.83e-21
Identity = 57/68 (83.82%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MLPRSAYQGIEREELEPELVGVKSR-----ALRSAAQMVPYEVSIGLILIVRLVSAFGSA 60
          ML RSAYQGIEREELE ELV VKSR     ALRS AQMVPYEVSI LILIVRLVSAFGSA
Sbjct: 1  MLQRSAYQGIEREELELELVRVKSRKRGGGALRSTAQMVPYEVSISLILIVRLVSAFGSA 60

Query: 61 KAIARMFS 63
          KAIA MFS
Sbjct: 61 KAIAWMFS 68

[Close]

BLAST of IVF0012681 vs. NCBI nr
Match: KAB1203708.1 (hypothetical protein CJ030_MR8G009968 [Morella rubra])

HSP 1 Score: 89.0 bits (219), Expect = 2.22e-20
Identity = 53/75 (70.67%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 1   MLPRSAYQGIEREELEPELVGV-------------KSRALRSAAQMVPYEVSIGLILIVR 60
           MLPRSAY+GIERE+  PE VG+             ++RALRSAAQMV YEVSIGLILIVR
Sbjct: 95  MLPRSAYRGIEREDRGPEQVGLGYRAVSAVGGDRGRARALRSAAQMVSYEVSIGLILIVR 154

Query: 61  LVSAFGSAKAIARMF 62
           LVSAFGSAKAIARMF
Sbjct: 155 LVSAFGSAKAIARMF 169

[Close]

BLAST of IVF0012681 vs. NCBI nr
Match: EEF27089.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 87.0 bits (214), Expect = 5.84e-20
Identity = 52/75 (69.33%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 1   MLPRSAYQGIEREELEPELVGV-------------KSRALRSAAQMVPYEVSIGLILIVR 60
           MLP+SAY+GIERE+  PE VG+             ++RALRSAAQMV YEVSIGLILIVR
Sbjct: 64  MLPQSAYRGIEREDPGPEQVGLGYRAVSAMGGDRGRARALRSAAQMVSYEVSIGLILIVR 123

Query: 61  LVSAFGSAKAIARMF 62
           LVSAFGSAKAIARMF
Sbjct: 124 LVSAFGSAKAIARMF 138

[Close]

BLAST of IVF0012681 vs. NCBI nr
Match: KAF3452161.1 (hypothetical protein FNV43_RR08259 [Rhamnella rubrinervis])

HSP 1 Score: 78.6 bits (192), Expect = 6.96e-17
Identity = 48/70 (68.57%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 6   AYQGIEREELEPELVGV-------------KSRALRSAAQMVPYEVSIGLILIVRLVSAF 62
           A +GIERE+L PE VG+             ++RALRSAAQMVPYEVSIGLILIVRLVSA 
Sbjct: 46  APRGIEREDLGPEQVGLGYRAVSAVGGDRGRARALRSAAQMVPYEVSIGLILIVRLVSAL 105

The following BLAST results are available for this feature:

BLAST of IVF0012681 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P08834	6.0e-04	95.83	NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus OX=3654 GN=ND1 PE=2 ...	[more]

BLAST of IVF0012681 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UIF7	3.2e-16	83.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TGE3	2.1e-15	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6A1UV48	6.0e-15	70.67	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G009968 PE=4 SV=1	[more]
A0A0A0KNQ3	1.0e-14	79.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G505140 PE=4 SV=1	[more]
B9TAM6	2.3e-14	69.33	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_2130530 PE=4 SV=1	[more]

BLAST of IVF0012681 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040731.1	2.83e-21	100.00	hypothetical protein E6C27_scaffold45541G00060 [Cucumis melo var. makuwa]	[more]
KAA0055673.1	7.83e-21	83.82	hypothetical protein E6C27_scaffold181G00480 [Cucumis melo var. makuwa]	[more]
KAB1203708.1	2.22e-20	70.67	hypothetical protein CJ030_MR8G009968 [Morella rubra]	[more]
EEF27089.1	5.84e-20	69.33	conserved hypothetical protein [Ricinus communis]	[more]
KAF3452161.1	6.96e-17	68.57	hypothetical protein FNV43_RR08259 [Rhamnella rubrinervis]	[more]

BLAST of IVF0012681 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48185	FAMILY NOT NAMED	coord: 26..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012681.1	IVF0012681.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016491	oxidoreductase activity