IVF0012669 (gene) Melon (IVF77) v1

Overview
NameIVF0012669
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr04: 7739136 .. 7739462 (+)
RNA-Seq ExpressionIVF0012669
SyntenyIVF0012669
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGGACATCCCTGTGGGAAGAGGAAGGCGATACTGAAGGAGAGACAAACCAAAATGACGATGGTGTCGTGGAGGTAAGGGATGACAAAGAAGTGGCCCATTTTTCCTTGAACTTGATGGCAGAATTAAGCTCTCCACAGACGGTGAAGGTCAAGGGGTTGGTTAAAGGACTTGAGGTGGTGGCATTGGTAGACGGAGGAGCAACCCACAACTTTATTGACAAAGAATTGGTGACCTCACGTAAATTGCCAACGTCGAACACAGAGGATCCATTCAGGGCACTGGAATTTGAAAAGGAGTGGTCCTCACTATTGCTGATTTGA

mRNA sequence

ATGGGGAGGACATCCCTGTGGGAAGAGGAAGGCGATACTGAAGGAGAGACAAACCAAAATGACGATGGTGTCGTGGAGGTAAGGGATGACAAAGAAGTGGCCCATTTTTCCTTGAACTTGATGGCAGAATTAAGCTCTCCACAGACGGTGAAGGTCAAGGGGTTGGTTAAAGGACTTGAGGTGGTGGCATTGGTAGACGGAGGAGCAACCCACAACTTTATTGACAAAGAATTGGTGACCTCACGTAAATTGCCAACGTCGAACACAGAGGATCCATTCAGGGCACTGGAATTTGAAAAGGAGTGGTCCTCACTATTGCTGATTTGA

Coding sequence (CDS)

ATGGGGAGGACATCCCTGTGGGAAGAGGAAGGCGATACTGAAGGAGAGACAAACCAAAATGACGATGGTGTCGTGGAGGTAAGGGATGACAAAGAAGTGGCCCATTTTTCCTTGAACTTGATGGCAGAATTAAGCTCTCCACAGACGGTGAAGGTCAAGGGGTTGGTTAAAGGACTTGAGGTGGTGGCATTGGTAGACGGAGGAGCAACCCACAACTTTATTGACAAAGAATTGGTGACCTCACGTAAATTGCCAACGTCGAACACAGAGGATCCATTCAGGGCACTGGAATTTGAAAAGGAGTGGTCCTCACTATTGCTGATTTGA

Protein sequence

MGRTSLWEEEGDTEGETNQNDDGVVEVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKLPTSNTEDPFRALEFEKEWSSLLLI
Homology
BLAST of IVF0012669 vs. ExPASy TrEMBL
Match: A0A5A7T5F6 (E3 ubiquitin-protein ligase RGLG2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002070 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.5e-31
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 8   EEEGDTEGETNQNDDGVVEVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDG 67
           +EEGDTEGETNQNDDGVVEVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDG
Sbjct: 133 KEEGDTEGETNQNDDGVVEVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDG 192

Query: 68  GATHNFIDKELVTSR 83
           GATHNFIDKELVTSR
Sbjct: 193 GATHNFIDKELVTSR 207

BLAST of IVF0012669 vs. ExPASy TrEMBL
Match: A0A5D3CTU6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00600 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-07
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 8   EEEGDTEGETNQNDDGVVEVRDDK---EVAHFSLNLMAELSSPQTVKVKGLVKGLEVVAL 67
           +E  D   ET+Q  + +    +++   E+A+ SLN +  LSSP+T+K+KG ++G E+V L
Sbjct: 38  QEREDLSEETDQVGEEIETKGNEEVNIEIANLSLNSLVGLSSPKTIKIKGEIRGREIVVL 97

Query: 68  VDGGATHNFIDKELVTSRKL 85
           +DGGATHNFI KE+V   K+
Sbjct: 98  IDGGATHNFILKEVVKELKI 117

BLAST of IVF0012669 vs. ExPASy TrEMBL
Match: A0A0D3CF76 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-07
Identity = 31/64 (48.44%), Postives = 45/64 (70.31%), Query Frame = 0

Query: 26  EVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKLP 85
           E+ ++ EVA  S++ +  +SS +T+K+KG + G EVV L+D GAT+NF+ KELVT  KL 
Sbjct: 167 EIAEEVEVAAISISSIVGISSTRTIKLKGKLMGREVVVLIDNGATYNFVSKELVTQLKLQ 226

Query: 86  TSNT 90
           T  T
Sbjct: 227 TDRT 230

BLAST of IVF0012669 vs. ExPASy TrEMBL
Match: A0A5D3C129 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001970 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.0e-06
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 12 DTEGETNQNDDGVVEVRDDKEV-AHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGAT 71
          + +GE    D+ V+EVR  + +    S+N +  L++P  +KVKG VK  +VV L+D GAT
Sbjct: 13 EEDGEEEVTDENVIEVRAVENLNIELSINSIVGLTNPGAMKVKGKVKDEQVVVLIDCGAT 72

Query: 72 HNFIDKELVTSRKLPTSNT 90
          HNFI K+LVT+  LP   T
Sbjct: 73 HNFISKKLVTNLNLPLKAT 91

BLAST of IVF0012669 vs. ExPASy TrEMBL
Match: A0A5A7T7D3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00110 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-06
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 0

Query: 8  EEEGDTEGETNQNDDGVVEVRDD-KEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVD 67
          EEE   E E    +  V+E++++ K     S+N +  LS+P+T+KVK  +KG EVV L+D
Sbjct: 19 EEEIIEEDEYGLKELNVIEIKEEVKATVDLSINSVVGLSNPRTMKVKVKIKGEEVVVLID 78

Query: 68 GGATHNFIDKELVTSRKLP 86
           G+THNFI K++V + KLP
Sbjct: 79 WGSTHNFISKKVVAALKLP 97

BLAST of IVF0012669 vs. NCBI nr
Match: KAA0036837.1 (E3 ubiquitin-protein ligase RGLG2 [Cucumis melo var. makuwa] >TYJ95904.1 E3 ubiquitin-protein ligase RGLG2 [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (360), Expect = 1.78e-39
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 9   EEGDTEGETNQNDDGVVEVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGG 68
           EEGDTEGETNQNDDGVVEVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGG
Sbjct: 134 EEGDTEGETNQNDDGVVEVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGG 193

Query: 69  ATHNFIDKELVTSR 82
           ATHNFIDKELVTSR
Sbjct: 194 ATHNFIDKELVTSR 207

BLAST of IVF0012669 vs. NCBI nr
Match: XP_038904464.1 (uncharacterized protein LOC120090832 [Benincasa hispida])

HSP 1 Score: 69.7 bits (169), Expect = 3.70e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 30  DKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKLPTSNT 89
           D E A  SLN +A + SP+T+KV+G +   +VV L+D GA+HNFIDKELV+S KLP   T
Sbjct: 416 DHEAAELSLNSLARIDSPRTIKVRGAIGDKDVVVLIDSGASHNFIDKELVSSLKLPQMPT 475

BLAST of IVF0012669 vs. NCBI nr
Match: KAA0039528.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15281.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 2.44e-10
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 0

Query: 32  EVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKL 84
           E+A+ SLN +  LSSP+T+K+KG ++G E+V L+DGGATHNFI KE+V   K+
Sbjct: 65  EIANLSLNSLVGLSSPKTIKIKGEIRGREIVVLIDGGATHNFILKEVVKELKI 117

BLAST of IVF0012669 vs. NCBI nr
Match: KAE8650876.1 (hypothetical protein Csa_002497, partial [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 4.36e-10
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 0

Query: 16  ETNQNDDGVVEVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFID 75
           ETN ND+       + E+A+ SLN +  L+S +T+K+KG ++G EVV L+DGGATHNFI 
Sbjct: 51  ETNGNDEI------NTEIANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIA 110

Query: 76  KELVTSRKL 84
           +E+V   K+
Sbjct: 111 EEVVKELKI 113

BLAST of IVF0012669 vs. NCBI nr
Match: XP_030505320.1 (uncharacterized protein LOC115720307 [Cannabis sativa])

HSP 1 Score: 64.7 bits (156), Expect = 2.22e-09
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 0

Query: 32  EVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGATHNFIDKELVTSRKLPTSNTE 90
           +V   SLN +  L+SP+T+K+ G+V G EV  L+D GATHNFI   LVT  KLP S TE
Sbjct: 336 QVVEVSLNSVVGLTSPKTMKLVGIVHGQEVTVLIDSGATHNFIATSLVTQLKLPISTTE 394

BLAST of IVF0012669 vs. TAIR 10
Match: AT3G30770.1 (Eukaryotic aspartyl protease family protein )

HSP 1 Score: 42.0 bits (97), Expect = 3.6e-04
Identity = 28/80 (35.00%), Postives = 43/80 (53.75%), Query Frame = 0

Query: 10  EGDTEGETNQNDDGVVEVRDDKEVAHFSLNLMAELSSPQTVKVKGLVKGLEVVALVDGGA 69
           EG+T G  N+  +G++E  D K +         E +  + ++  G +   +VV ++D GA
Sbjct: 247 EGNTYGYGNE-WEGLLE--DFKTIRQVKRQSTTEFTKGKDMRFYGFISCHKVVVVIDSGA 306

Query: 70  THNFIDKELVTSRKLPTSNT 90
           T+NFI  EL    KLPTS T
Sbjct: 307 TNNFISDELALVLKLPTSTT 323

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T5F63.5e-3198.67E3 ubiquitin-protein ligase RGLG2 OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3CTU61.2e-0743.75Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A0D3CF762.1e-0748.44Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1[more]
A0A5D3C1291.0e-0644.30Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7T7D31.3e-0644.30Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
KAA0036837.11.78e-39100.00E3 ubiquitin-protein ligase RGLG2 [Cucumis melo var. makuwa] >TYJ95904.1 E3 ubiq... [more]
XP_038904464.13.70e-1155.00uncharacterized protein LOC120090832 [Benincasa hispida][more]
KAA0039528.12.44e-1056.60ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15281.1 ty3-gyp... [more]
KAE8650876.14.36e-1047.83hypothetical protein Csa_002497, partial [Cucumis sativus][more]
XP_030505320.12.22e-0954.24uncharacterized protein LOC115720307 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
AT3G30770.13.6e-0435.00Eukaryotic aspartyl protease family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF08284RVP_2coord: 36..92
e-value: 7.1E-6
score: 25.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 52..93
e-value: 5.20759E-9
score: 47.3312
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 29..97
e-value: 4.0E-6
score: 28.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0012669.2IVF0012669.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0004518 nuclease activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016779 nucleotidyltransferase activity