IVF0012656 (gene) Melon (IVF77) v1

Overview


Name	IVF0012656
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	60S ribosomal protein L18
Location	chr05: 916888 .. 917235 (-)
RNA-Seq Expression	IVF0012656
Synteny	IVF0012656

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGAAAGGAAAGTAGAATTTCTGTTGTTGTTGGGAATGTTGCCGATGAAATTCGCATCTGTGAAGTTCCAGCACTGAAAGCTCTAAGGCTCACTCAGACAGCAAGGTCAAGGATCGAAAAGGCTGGCTGGGAATGTTTGACATTTGACCAGCTTGCTTTTAGGGCTCATCTGGGTCAGAACACGGTTCTTCTTAGAGGTCCTAAGAACTCCCAAGAGGCATTAAAGCTTTTCGGTCCAGCACCTGCTGTGTCACACAGCCATTCCGAGCCATATGTGAGGTCTAATGGAAGGAATTTCGAGAGGGCTAGAGGAAAGAGGAACAGCAGGGGATATGGAGTTTGA

mRNA sequence

ATGAAAGGAAAGGAAAGTAGAATTTCTGTTGTTGTTGGGAATGTTGCCGATGAAATTCGCATCTGTGAAGTTCCAGCACTGAAAGCTCTAAGGCTCACTCAGACAGCAAGGTCAAGGATCGAAAAGGCTGGCTGGGAATGTTTGACATTTGACCAGCTTGCTTTTAGGGCTCATCTGGGTCAGAACACGGTTCTTCTTAGAGGTCCTAAGAACTCCCAAGAGGCATTAAAGCTTTTCGGTCCAGCACCTGCTGTGTCACACAGCCATTCCGAGCCATATGTGAGGTCTAATGGAAGGAATTTCGAGAGGGCTAGAGGAAAGAGGAACAGCAGGGGATATGGAGTTTGA

Coding sequence (CDS)

ATGAAAGGAAAGGAAAGTAGAATTTCTGTTGTTGTTGGGAATGTTGCCGATGAAATTCGCATCTGTGAAGTTCCAGCACTGAAAGCTCTAAGGCTCACTCAGACAGCAAGGTCAAGGATCGAAAAGGCTGGCTGGGAATGTTTGACATTTGACCAGCTTGCTTTTAGGGCTCATCTGGGTCAGAACACGGTTCTTCTTAGAGGTCCTAAGAACTCCCAAGAGGCATTAAAGCTTTTCGGTCCAGCACCTGCTGTGTCACACAGCCATTCCGAGCCATATGTGAGGTCTAATGGAAGGAATTTCGAGAGGGCTAGAGGAAAGAGGAACAGCAGGGGATATGGAGTTTGA

Protein sequence

MKGKESRISVVVGNVADEIRICEVPALKALRLTQTARSRIEKAGWECLTFDQLAFRAHLGQNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV

Homology

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BLAST of IVF0012656 vs. ExPASy Swiss-Prot
Match: P42791 (60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2)

HSP 1 Score: 164.5 bits (415), Expect = 7.3e-40
Identity = 81/117 (69.23%), Postives = 98/117 (83.76%), Query Frame = 0


Query: 1   MKGKESRISVVVGNVADEIRICEVPALK--ALRLTQTARSRIEKAGWECLTFDQLAFRAH 60
           M GKE +I+V+VG + D++R+ E+PA+K  ALR T+ AR+RIEKAG ECLTFDQLA RA 
Sbjct: 71  MTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAP 130

Query: 61  LGQNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV 116
           LGQNTVLLRGPKNS+EA+K FGPAP V HSHS+PYVR+ GR FE+ARGKR SRG+ V
Sbjct: 131 LGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKSRGFKV 187

[Close]

BLAST of IVF0012656 vs. ExPASy Swiss-Prot
Match: Q940B0 (60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 4.0e-38
Identity = 78/117 (66.67%), Postives = 97/117 (82.91%), Query Frame = 0


Query: 1   MKGKESRISVVVGNVADEIRICEVPALK--ALRLTQTARSRIEKAGWECLTFDQLAFRAH 60
           M GK+ +I+V+VG + D++R+ E+PA+K  ALR T+ AR+RIEKAG ECLTFDQLA RA 
Sbjct: 71  MTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAP 130

Query: 61  LGQNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV 116
           LGQNTVLLRGPKNS+EA+K FGPAP V HS+++PYVR  GR FE+ARGKR SRG+ V
Sbjct: 131 LGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKRKSRGFKV 187

[Close]

BLAST of IVF0012656 vs. ExPASy Swiss-Prot
Match: O65729 (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.2e-35
Identity = 76/117 (64.96%), Postives = 95/117 (81.20%), Query Frame = 0


Query: 1   MKGKESRISVVVGNVADEIRICEVPALK--ALRLTQTARSRIEKAGWECLTFDQLAFRAH 60
           M+GKE +I VVVG V D+IR+ +VP +K  AL+ T+TAR+RI+KAG ECLTFDQLA R  
Sbjct: 68  MQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLP 127

Query: 61  LGQNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV 116
           L  +TVLLRGPKN++EA+K FGPAP V HSH++PYVRS GR FE+ARG+R SRG+ V
Sbjct: 128 L-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 183

[Close]

BLAST of IVF0012656 vs. ExPASy Swiss-Prot
Match: O22254 (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A PE=3 SV=3)

HSP 1 Score: 137.9 bits (346), Expect = 7.3e-32
Identity = 71/118 (60.17%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 1   MKGKESRISVVVGNVADEIRICEVPAL--KALRLTQTARSRIEKAGWECLTFDQLAFRAH 60
           M GK+ +I+V+VG V D++RI +VPAL   ALR T++AR+RI KAG ECLTFDQLA    
Sbjct: 71  MDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCP 130

Query: 61  L-GQNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV 116
              +NTVLLRGPKN++EA+K FGPAP V HSH++PYVR  G+  E ARG+R SRG+ V
Sbjct: 131 TWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGRRRSRGFKV 188

[Close]

BLAST of IVF0012656 vs. ExPASy Swiss-Prot
Match: Q4PM04 (60S ribosomal protein L18 OS=Ixodes scapularis OX=6945 GN=RpL18 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.1e-31
Identity = 69/113 (61.06%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 3   GKESRISVVVGNVADEIRICEVPALK--ALRLTQTARSRIEKAGWECLTFDQLAFRAHLG 62
           G+E+ I+VVVG V D++R+ +VP L+  ALR+T+ AR+RI KAG E LTFDQLA +A  G
Sbjct: 74  GRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGEILTFDQLAVQAPKG 133

Query: 63  QNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGY 114
           + TVL++GP+NS+EA + FGPAP V HSH++PYVRS GR FERARG+R SR Y
Sbjct: 134 KGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKGRKFERARGRRKSRRY 186

[Close]

BLAST of IVF0012656 vs. ExPASy TrEMBL
Match: A0A5D3BA35 (60S ribosomal protein L18-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G001230 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.0e-57
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MKGKESRISVVVGNVADEIRICEVPALKALRLTQTARSRIEKAGWECLTFDQLAFRAHLG 60
           MKGKESRISVVVGNVADEIRICEVPALKALRLTQTARSRIEKAGWECLTFDQLAFRAHLG
Sbjct: 1   MKGKESRISVVVGNVADEIRICEVPALKALRLTQTARSRIEKAGWECLTFDQLAFRAHLG 60

Query: 61  QNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV 116
           QNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV
Sbjct: 61  QNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV 115

[Close]

BLAST of IVF0012656 vs. ExPASy TrEMBL
Match: A0A5A7TD77 (60S ribosomal protein L18-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00400 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 9.8e-56
Identity = 113/115 (98.26%), Postives = 113/115 (98.26%), Query Frame = 0


Query: 1   MKGKESRISVVVGNVADEIRICEVPALKALRLTQTARSRIEKAGWECLTFDQLAFRAHLG 60
           MKGKESRISVVVGNVADEIRICEVPALKALRLTQTARSRIEKAGWECLTFDQLAFRAHLG
Sbjct: 1   MKGKESRISVVVGNVADEIRICEVPALKALRLTQTARSRIEKAGWECLTFDQLAFRAHLG 60

Query: 61  QNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV 116
           QNTVLLRGPKNSQEALK FGPAPAVSHSHSEPYVRS GRNFERARGKRNSRGYGV
Sbjct: 61  QNTVLLRGPKNSQEALKHFGPAPAVSHSHSEPYVRSKGRNFERARGKRNSRGYGV 115

[Close]

BLAST of IVF0012656 vs. ExPASy TrEMBL
Match: A0A5A7U942 (60S ribosomal protein L18-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004150 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.7e-42
Identity = 92/117 (78.63%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 1   MKGKESRISVVVGNVADEIRICEVPALK--ALRLTQTARSRIEKAGWECLTFDQLAFRAH 60
           MKGKES+I+VVVG + D+IR+ EVPALK  ALR T+TAR+RIEKAG ECLTFDQLA RA 
Sbjct: 71  MKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAP 130

Query: 61  LGQNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV 116
           LGQNTVLLRGPKNS+EA+K FGPAP V HSHS+PYVRS GR FERARGKRNSRGY V
Sbjct: 131 LGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV 187

[Close]

BLAST of IVF0012656 vs. ExPASy TrEMBL
Match: A0A1S3BPL9 (60S ribosomal protein L18-2 OS=Cucumis melo OX=3656 GN=LOC103492145 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.7e-42
Identity = 92/117 (78.63%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 1   MKGKESRISVVVGNVADEIRICEVPALK--ALRLTQTARSRIEKAGWECLTFDQLAFRAH 60
           MKGKES+I+VVVG + D+IR+ EVPALK  ALR T+TAR+RIEKAG ECLTFDQLA RA 
Sbjct: 71  MKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAP 130

Query: 61  LGQNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV 116
           LGQNTVLLRGPKNS+EA+K FGPAP V HSHS+PYVRS GR FERARGKRNSRGY V
Sbjct: 131 LGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV 187

[Close]

BLAST of IVF0012656 vs. ExPASy TrEMBL
Match: A0A5A7U3L4 (60S ribosomal protein L18-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001430 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.8e-41
Identity = 91/117 (77.78%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 1   MKGKESRISVVVGNVADEIRICEVPALK--ALRLTQTARSRIEKAGWECLTFDQLAFRAH 60
           MKGKE++I+VVVG V D+IR+ EVPALK  ALR T+TAR+RIEKAG ECLTFDQLA RA 
Sbjct: 71  MKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAP 130

Query: 61  LGQNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV 116
           LGQNTVLLRGPKNS+EA+K FGPAP V HSH++PYVRS GR FERARGKRNSRGY V
Sbjct: 131 LGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV 187

[Close]

BLAST of IVF0012656 vs. NCBI nr
Match: TYJ96153.1 (60S ribosomal protein L18-2 [Cucumis melo var. makuwa])

HSP 1 Score: 229 bits (585), Expect = 7.74e-76
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MKGKESRISVVVGNVADEIRICEVPALKALRLTQTARSRIEKAGWECLTFDQLAFRAHLG 60
           MKGKESRISVVVGNVADEIRICEVPALKALRLTQTARSRIEKAGWECLTFDQLAFRAHLG
Sbjct: 1   MKGKESRISVVVGNVADEIRICEVPALKALRLTQTARSRIEKAGWECLTFDQLAFRAHLG 60

Query: 61  QNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV 115
           QNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV
Sbjct: 61  QNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV 115

[Close]

BLAST of IVF0012656 vs. NCBI nr
Match: KAA0041394.1 (60S ribosomal protein L18-2 [Cucumis melo var. makuwa])

HSP 1 Score: 224 bits (572), Expect = 7.45e-74
Identity = 113/115 (98.26%), Postives = 113/115 (98.26%), Query Frame = 0


Query: 1   MKGKESRISVVVGNVADEIRICEVPALKALRLTQTARSRIEKAGWECLTFDQLAFRAHLG 60
           MKGKESRISVVVGNVADEIRICEVPALKALRLTQTARSRIEKAGWECLTFDQLAFRAHLG
Sbjct: 1   MKGKESRISVVVGNVADEIRICEVPALKALRLTQTARSRIEKAGWECLTFDQLAFRAHLG 60

Query: 61  QNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV 115
           QNTVLLRGPKNSQEALK FGPAPAVSHSHSEPYVRS GRNFERARGKRNSRGYGV
Sbjct: 61  QNTVLLRGPKNSQEALKHFGPAPAVSHSHSEPYVRSKGRNFERARGKRNSRGYGV 115

[Close]

BLAST of IVF0012656 vs. NCBI nr
Match: XP_008450608.1 (PREDICTED: 60S ribosomal protein L18-2 [Cucumis melo] >KAA0050917.1 60S ribosomal protein L18-2 [Cucumis melo var. makuwa] >TYK10265.1 60S ribosomal protein L18-2 [Cucumis melo var. makuwa])

HSP 1 Score: 179 bits (454), Expect = 7.28e-55
Identity = 92/117 (78.63%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 1   MKGKESRISVVVGNVADEIRICEVPALK--ALRLTQTARSRIEKAGWECLTFDQLAFRAH 60
           MKGKES+I+VVVG + D+IR+ EVPALK  ALR T+TAR+RIEKAG ECLTFDQLA RA 
Sbjct: 71  MKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAP 130

Query: 61  LGQNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV 115
           LGQNTVLLRGPKNS+EA+K FGPAP V HSHS+PYVRS GR FERARGKRNSRGY V
Sbjct: 131 LGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV 187

[Close]

BLAST of IVF0012656 vs. NCBI nr
Match: KAG7030228.1 (60S ribosomal protein L18-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176 bits (447), Expect = 1.57e-54
Identity = 90/117 (76.92%), Postives = 101/117 (86.32%), Query Frame = 0


Query: 1   MKGKESRISVVVGNVADEIRICEVPALK--ALRLTQTARSRIEKAGWECLTFDQLAFRAH 60
           MKGKE +I+V+VG V D+IR+ EVPALK  ALR T+TAR+RIEKAG ECLTFDQLA RA 
Sbjct: 18  MKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAP 77

Query: 61  LGQNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV 115
           LGQNTVLLRGPKNS+EA+K FGPAP V HSH++PYVRS GR FERARGKRNSRGY V
Sbjct: 78  LGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV 134

[Close]

BLAST of IVF0012656 vs. NCBI nr
Match: XP_011659839.1 (60S ribosomal protein L18-2 [Cucumis sativus] >KAE8653364.1 hypothetical protein Csa_007522 [Cucumis sativus])

HSP 1 Score: 177 bits (449), Expect = 4.19e-54
Identity = 91/116 (78.45%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 2   KGKESRISVVVGNVADEIRICEVPALK--ALRLTQTARSRIEKAGWECLTFDQLAFRAHL 61
           KGKES+I+VVVG + D+IR+ EVPALK  ALR T+TAR+RIEKAG ECLTFDQLA RA L
Sbjct: 72  KGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPL 131

Query: 62  GQNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV 115
           GQNTVLLRGPKNS+EA+K FGPAP V HSHS+PYVRS GR FERARGKRNSRGY V
Sbjct: 132 GQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV 187

[Close]

BLAST of IVF0012656 vs. TAIR 10
Match: AT3G05590.1 (ribosomal protein L18 )

HSP 1 Score: 164.5 bits (415), Expect = 5.2e-41
Identity = 81/117 (69.23%), Postives = 98/117 (83.76%), Query Frame = 0


Query: 1   MKGKESRISVVVGNVADEIRICEVPALK--ALRLTQTARSRIEKAGWECLTFDQLAFRAH 60
           M GKE +I+V+VG + D++R+ E+PA+K  ALR T+ AR+RIEKAG ECLTFDQLA RA 
Sbjct: 71  MTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAP 130

Query: 61  LGQNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV 116
           LGQNTVLLRGPKNS+EA+K FGPAP V HSHS+PYVR+ GR FE+ARGKR SRG+ V
Sbjct: 131 LGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKSRGFKV 187

[Close]

BLAST of IVF0012656 vs. TAIR 10
Match: AT5G27850.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 158.7 bits (400), Expect = 2.8e-39
Identity = 78/117 (66.67%), Postives = 97/117 (82.91%), Query Frame = 0


Query: 1   MKGKESRISVVVGNVADEIRICEVPALK--ALRLTQTARSRIEKAGWECLTFDQLAFRAH 60
           M GK+ +I+V+VG + D++R+ E+PA+K  ALR T+ AR+RIEKAG ECLTFDQLA RA 
Sbjct: 71  MTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAP 130

Query: 61  LGQNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV 116
           LGQNTVLLRGPKNS+EA+K FGPAP V HS+++PYVR  GR FE+ARGKR SRG+ V
Sbjct: 131 LGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKRKSRGFKV 187

[Close]

BLAST of IVF0012656 vs. TAIR 10
Match: AT2G47570.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 137.9 bits (346), Expect = 5.2e-33
Identity = 71/118 (60.17%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 1   MKGKESRISVVVGNVADEIRICEVPAL--KALRLTQTARSRIEKAGWECLTFDQLAFRAH 60
           M GK+ +I+V+VG V D++RI +VPAL   ALR T++AR+RI KAG ECLTFDQLA    
Sbjct: 18  MDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCP 77

Query: 61  L-GQNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV 116
              +NTVLLRGPKN++EA+K FGPAP V HSH++PYVR  G+  E ARG+R SRG+ V
Sbjct: 78  TWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGRRRSRGFKV 135

[Close]

BLAST of IVF0012656 vs. TAIR 10
Match: AT2G47570.2 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 137.9 bits (346), Expect = 5.2e-33
Identity = 71/118 (60.17%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 1   MKGKESRISVVVGNVADEIRICEVPAL--KALRLTQTARSRIEKAGWECLTFDQLAFRAH 60
           M GK+ +I+V+VG V D++RI +VPAL   ALR T++AR+RI KAG ECLTFDQLA    
Sbjct: 18  MDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCP 77

Query: 61  L-GQNTVLLRGPKNSQEALKLFGPAPAVSHSHSEPYVRSNGRNFERARGKRNSRGYGV 116
              +NTVLLRGPKN++EA+K FGPAP V HSH++PYVR  G+  E ARG+R SRG+ V
Sbjct: 78  TWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGRRRSRGFKV 135

The following BLAST results are available for this feature:

BLAST of IVF0012656 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42791	7.3e-40	69.23	60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2	[more]
Q940B0	4.0e-38	66.67	60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1	[more]
O65729	3.2e-35	64.96	60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV...	[more]
O22254	7.3e-32	60.17	Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A P...	[more]
Q4PM04	2.1e-31	61.06	60S ribosomal protein L18 OS=Ixodes scapularis OX=6945 GN=RpL18 PE=2 SV=1	[more]

BLAST of IVF0012656 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BA35	3.0e-57	100.00	60S ribosomal protein L18-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7TD77	9.8e-56	98.26	60S ribosomal protein L18-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7U942	4.7e-42	78.63	60S ribosomal protein L18-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BPL9	4.7e-42	78.63	60S ribosomal protein L18-2 OS=Cucumis melo OX=3656 GN=LOC103492145 PE=3 SV=1	[more]
A0A5A7U3L4	1.8e-41	77.78	60S ribosomal protein L18-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of IVF0012656 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96153.1	7.74e-76	100.00	60S ribosomal protein L18-2 [Cucumis melo var. makuwa]	[more]
KAA0041394.1	7.45e-74	98.26	60S ribosomal protein L18-2 [Cucumis melo var. makuwa]	[more]
XP_008450608.1	7.28e-55	78.63	PREDICTED: 60S ribosomal protein L18-2 [Cucumis melo] >KAA0050917.1 60S ribosoma...	[more]
KAG7030228.1	1.57e-54	76.92	60S ribosomal protein L18-2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_011659839.1	4.19e-54	78.45	60S ribosomal protein L18-2 [Cucumis sativus] >KAE8653364.1 hypothetical protein...	[more]

BLAST of IVF0012656 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05590.1	5.2e-41	69.23	ribosomal protein L18	[more]
AT5G27850.1	2.8e-39	66.67	Ribosomal protein L18e/L15 superfamily protein	[more]
AT2G47570.1	5.2e-33	60.17	Ribosomal protein L18e/L15 superfamily protein	[more]
AT2G47570.2	5.2e-33	60.17	Ribosomal protein L18e/L15 superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.100.10.10		coord: 1..114 e-value: 5.9E-45 score: 155.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..115
None	No IPR available	PANTHER	PTHR10934:SF18	60S RIBOSOMAL PROTEIN L18-1-RELATED	coord: 1..114
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF17135	Ribosomal_L18	coord: 3..113 e-value: 2.7E-44 score: 150.8
IPR000039	Ribosomal protein L18e	PANTHER	PTHR10934	60S RIBOSOMAL PROTEIN L18	coord: 1..114
IPR036227	Ribosomal L18e/L15P superfamily	SUPERFAMILY	52080	Ribosomal proteins L15p and L18e	coord: 5..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012656.2	IVF0012656.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome