IVF0012583 (gene) Melon (IVF77) v1

Overview


Name	IVF0012583
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	30S ribosomal protein S6 alpha, chloroplastic
Location	chr09: 22632013 .. 22634880 (+)
RNA-Seq Expression	IVF0012583
Synteny	IVF0012583

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTGGTGTTTCTATCCCTCTCGAATGCTCTATTATCCTGCACCAAGGTGTATACCCTCTTATCCATATCTACTTCTTCATTTCAACGATTCCACTATGCTATCTCCTTGTTGCCACTGAATTTCGAGTCTGCCCCAATAGCAGAACTCGTTCGAAATAACATGGCCTTCACTTCCACTCTCACCGCTACTTCTTCAACTTCTCCTCTCTCCTCCAAATCCCCTTCTCTTCCCCCATTCACGAATCAAATTTCTTTCCCCTTTACCCTCAAACTCTCCAAACCCCTCTTTTCTCCCGATGGAATCGGCTCTGCTTTGGGTATCGGATTGTCCGTAAAAGCGCAAACTCTTGAATTTTCAGGTTCGTTCTTCGAAGGTGGGCTCGGAAGTCAGGATGAACCGCCTGCCCCTCCAGGAACAGGATTTGCCACTGCCCTCGAAGATAAGGAGGAGCCCCAATGCCCTCCTGGACTTCGAAAGTACGAGACTATGGTGGTTTTGAGGCCCGACATGTCTGAAGACGAGAGACTCGCTTTCACCGAGAAATACGAAGAGGTAGTATCATCTCTGAAATGTAGCTACTGTGTTGTTATCTTTTCCCCTCTTCTGTAGTTCTCTTTGGTTTCTGATGAAAGACCAAGGGAAAACGGAAATTTGTTTAGACTAGTTTCATATCTGAGAGAGAATTCAGTTTGTTGCTCTGTTTAAATTGGGTTTACGATCACATAGTCCTTGCGGCCTTTCTGAGAAGCCACATAAGAAGTAATGAGGTGGGAGATTGTCATTGCCTGAATCCGAACACATTATTCAAGTAATGGATAGCTCATGAAAACTTAGGCTGTAGTTAATGAAAACCAGTAGCTTTTATGGAAATGCAGTTGAAAATTTTTAATATATGAGTAGTATGCTCTGTTTGAGTATAGTTCCCAAGAAGAGGGAACCTTTTGTCGTGTCAGCCTTCTAAGTCCTATGGAGACACTAGTGGTGAGAATTTCACGTTGAAGAGATGGAGCAACACATGAGCCACTCCTCTCTTTGCTAATTGATTTTTATTTGAAACTCTGTGTTGTTCTAATATGGTATTGGGAGTTCAATCAAGTATTTGGGAACTAATAAAAAAAGTCAAGTATTTGGGGAAAACAGATCTGACTCAAGAAGGGGTGAACCAAAAGATGGAGAGGTATATACATTACTTCTCTTGTTGACAATTGGTTTTGAGATGTAACTTCATGTTCATCTAATATGTAGGGATGAATGGATTCTTTTATTTCTTTGATGAAAGAGATTTTTCATTGAACTTTAGGGATATTTGACTATCAATAAACGTGAGTTTATGAACCCTAAGAAAAGTTGGATTTTGTATAACCTATGTTTGTATTATGGAAAGGAATCGGCTTTTGTAAACTTGAGTTTGTGTAACTTGTAATTAGCTGGTGAGTTTAGATTATCTATTTATTTCTTAAATACGATATGTAATATAAAATATAGATTCATGTAATAACTTTATATCGTTCGTAAGAACAGCAAACTTATGGTTTGGAATAAACAAGCCAACACCTTAAACACCTAGTCTTTTGATCTCATGTTACACATTTAATCCATAAGCCAACTTTTAGTGCTTGAAAAATAGTGTAGTGTTAAGCAACTTTGATGTAGAGGGGCACTGGGTGATTGATTTGTTGTAAAGAGGCTAGTGGCAGCATGGAGACCATTTTTATGAGTTAACATTCAAGATAGGCCGGAAAGTTACTTGCATTTTTGGAAGGAAAGTTGCCTAAATTGGCAATTTATTTCTTATAGGAACTGTTTGCATTTTATATTCCTTTCAAGCATGCACTCCTTATCATGAAAACATTGAATGGAATACCAAGATTTTTTTCCCTTGTGCGTGTGTGCATTGTCACGATAAAATCACAGTAATATTTATCTCATTATTGTGAGAAATTCTCCCCATCCTTGATTAAGTAAACTTCTGATTGTGGAGTAAAGTTACAAACTGTGGATTTATATGATGTAAGCATCAACCGATGATCTTAGTTGATTGAACGATTTCACTCTTGACTGAAGCATGACTTTTTCTTTCATCTATTAAGAGGTAATTTAGCTTTATATAAGCAAGCGATTCTTTGGTAAAGGGACAATCAAGTTAGTATTTTGTTTTTCTTTAAACATAGTGTTTGACAAGAATGGGCTATTTTGCAGTTGCTTGTTGCTGGGGGTGCAATGTATGTTGAAGTATTCAACAAAGGGCTCATTCCACTAGCATATAGCATCAAGAAGAAAAACAAAGCTGGTGAAACTAACACTTACTTGGATGGCATCAATCTCCTTTTCACCTACTTCACAAAACCCGAATCAATGGCAGTTCTCGAGGCAACGCTTCAAGCAGACGACGATGTTGTTCGATCGATGAGTTTCAAGGTAAGGAAACGAAAATTCTAAGTATGCCTTAGCCTTAAATATCTTGGTGTTTCACGTCATCATTTGGACAAATTTTATTCAAAGCAATGGAAAAAGATTTGTAGTTGCCAGTTTGTGCTTTTCCTTGTCAAAATGAGTGCTGCTATTGTGACAACTCTATGGGCCATTTAGGCTTTATCCATAACCATCTGATTGCTGTTCTTTCCATCACAGCCTTCCAATGGAAGTACTATTTCAAGTTGGAAAAAAGAAAAAAAGAAAGAAAAAGGAAATATAGATTAGATGTTGATCTTTCATAGCTGGAAAATCCACTTAGTGACTTGAGAACATTTTCCTTTCTTTAAAAAAAAAAATTGATCCACCAATGACTGTCGTGTTCTATCGATCAAGCAACACACTCCGTTGAAAGTGCATTTGGATTCAAAAGAAATACAAATAAAATTATGAG

mRNA sequence

AAGTGGTGTTTCTATCCCTCTCGAATGCTCTATTATCCTGCACCAAGGTGTATACCCTCTTATCCATATCTACTTCTTCATTTCAACGATTCCACTATGCTATCTCCTTGTTGCCACTGAATTTCGAGTCTGCCCCAATAGCAGAACTCGTTCGAAATAACATGGCCTTCACTTCCACTCTCACCGCTACTTCTTCAACTTCTCCTCTCTCCTCCAAATCCCCTTCTCTTCCCCCATTCACGAATCAAATTTCTTTCCCCTTTACCCTCAAACTCTCCAAACCCCTCTTTTCTCCCGATGGAATCGGCTCTGCTTTGGGTATCGGATTGTCCGTAAAAGCGCAAACTCTTGAATTTTCAGGTTCGTTCTTCGAAGGTGGGCTCGGAAGTCAGGATGAACCGCCTGCCCCTCCAGGAACAGGATTTGCCACTGCCCTCGAAGATAAGGAGGAGCCCCAATGCCCTCCTGGACTTCGAAAGTACGAGACTATGGTGGTTTTGAGGCCCGACATGTCTGAAGACGAGAGACTCGCTTTCACCGAGAAATACGAAGAGTTGCTTGTTGCTGGGGGTGCAATGTATGTTGAAGTATTCAACAAAGGGCTCATTCCACTAGCATATAGCATCAAGAAGAAAAACAAAGCTGGTGAAACTAACACTTACTTGGATGGCATCAATCTCCTTTTCACCTACTTCACAAAACCCGAATCAATGGCAGTTCTCGAGGCAACGCTTCAAGCAGACGACGATGTTGTTCGATCGATGAGTTTCAAGGTAAGGAAACGAAAATTCTAAGTATGCCTTAGCCTTAAATATCTTGGTGTTTCACGTCATCATTTGGACAAATTTTATTCAAAGCAATGGAAAAAGATTTGTAGTTGCCAGTTTGTGCTTTTCCTTGTCAAAATGAGTGCTGCTATTGTGACAACTCTATGGGCCATTTAGGCTTTATCCATAACCATCTGATTGCTGTTCTTTCCATCACAGCCTTCCAATGGAAGTACTATTTCAAGTTGGAAAAAAGAAAAAAAGAAAGAAAAAGGAAATATAGATTAGATGTTGATCTTTCATAGCTGGAAAATCCACTTAGTGACTTGAGAACATTTTCCTTTCTTTAAAAAAAAAAATTGATCCACCAATGACTGTCGTGTTCTATCGATCAAGCAACACACTCCGTTGAAAGTGCATTTGGATTCAAAAGAAATACAAATAAAATTATGAG

Coding sequence (CDS)

ATGGCCTTCACTTCCACTCTCACCGCTACTTCTTCAACTTCTCCTCTCTCCTCCAAATCCCCTTCTCTTCCCCCATTCACGAATCAAATTTCTTTCCCCTTTACCCTCAAACTCTCCAAACCCCTCTTTTCTCCCGATGGAATCGGCTCTGCTTTGGGTATCGGATTGTCCGTAAAAGCGCAAACTCTTGAATTTTCAGGTTCGTTCTTCGAAGGTGGGCTCGGAAGTCAGGATGAACCGCCTGCCCCTCCAGGAACAGGATTTGCCACTGCCCTCGAAGATAAGGAGGAGCCCCAATGCCCTCCTGGACTTCGAAAGTACGAGACTATGGTGGTTTTGAGGCCCGACATGTCTGAAGACGAGAGACTCGCTTTCACCGAGAAATACGAAGAGTTGCTTGTTGCTGGGGGTGCAATGTATGTTGAAGTATTCAACAAAGGGCTCATTCCACTAGCATATAGCATCAAGAAGAAAAACAAAGCTGGTGAAACTAACACTTACTTGGATGGCATCAATCTCCTTTTCACCTACTTCACAAAACCCGAATCAATGGCAGTTCTCGAGGCAACGCTTCAAGCAGACGACGATGTTGTTCGATCGATGAGTTTCAAGGTAAGGAAACGAAAATTCTAA

Protein sequence

MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKAQTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSEDERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKF

Homology

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BLAST of IVF0012583 vs. ExPASy Swiss-Prot
Match: Q8VY91 (30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS6 PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-65
Identity = 131/199 (65.83%), Postives = 154/199 (77.39%), Query Frame = 0


Query: 12  STSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKAQTLEFSGSFFE 71
           S+ PL S S SL PF ++         SKP+ +   I    G    VK+Q L+FSG+FFE
Sbjct: 19  SSQPLLSFSHSLRPFISK---------SKPMCA--SIQKRDGSQFVVKSQALDFSGTFFE 78

Query: 72  GGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSEDERLAFTEKYEE 131
           GG GS D+P +P G+G +TALEDK EPQCPPGLR+YETM VLRPDMSEDERL  T+KYEE
Sbjct: 79  GGFGSDDDPTSPSGSGVSTALEDKPEPQCPPGLRQYETMAVLRPDMSEDERLGLTQKYEE 138

Query: 132 LLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATL 191
           LLVAGG MYVEVFN+G+IPLAYSI+KKNKAGETNTYLDGI LLFTYFTKPES+  LE  L
Sbjct: 139 LLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPESIVPLETVL 198

Query: 192 QADDDVVRSMSFKVRKRKF 211
            ADDD++RS SFK++KRK+
Sbjct: 199 TADDDIIRSSSFKIKKRKY 206

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BLAST of IVF0012583 vs. ExPASy Swiss-Prot
Match: P82403 (30S ribosomal protein S6 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS6 PE=1 SV=3)

HSP 1 Score: 237.7 bits (605), Expect = 1.2e-61
Identity = 134/211 (63.51%), Postives = 154/211 (72.99%), Query Frame = 0


Query: 2   AFTSTLTATSSTSPLSS-KSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 61
           + TSTL ++S T+ L S   P L P T  I+F   L    P   P         G  VKA
Sbjct: 5   SLTSTLPSSSPTTSLHSIPKPKLKPST--INFTHNLNPFNPNLKPSRHHYLSNYGPYVKA 64

Query: 62  QTLEFSGSFFEGGLGSQDE-PPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSE 121
             L+FSGSFFEGG G  DE PP+ P  G   A+E+K EPQCPPGLR+YETM VLRPDM+E
Sbjct: 65  IALDFSGSFFEGGFGGLDEDPPSTPPAGL--AVEEKPEPQCPPGLRQYETMAVLRPDMTE 124

Query: 122 DERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFT 181
           DERL  T+KYEELLVAGGAMYVEVFN+G+IPLAYSIK+KNKAGETN YLDGI LLFTYFT
Sbjct: 125 DERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFT 184

Query: 182 KPESMAVLEATLQADDDVVRSMSFKVRKRKF 211
           KPES++ LEA L  DDDV+RS SFK+RKRK+
Sbjct: 185 KPESISPLEAALVTDDDVIRSSSFKIRKRKY 211

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BLAST of IVF0012583 vs. ExPASy Swiss-Prot
Match: Q3MBE2 (30S ribosomal protein S6 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rpsF PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.1e-09
Identity = 33/98 (33.67%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 107 YETMVVLRPDMSEDERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNT 166
           YET+ +LRPD+++++      KY+ LL   GA  +EV N+G   LAY IKK+        
Sbjct: 5   YETLYILRPDLTDEQVELAIAKYQNLLQEQGATDIEVQNRGKRRLAYEIKKQR------- 64

Query: 167 YLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFK 205
             DG  + F Y    +++A+LE  ++  ++V+R ++ K
Sbjct: 65  --DGFYVQFNYNAPGKAIAILERAMRLSEEVIRYLTVK 93

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BLAST of IVF0012583 vs. ExPASy Swiss-Prot
Match: Q8YMX2 (30S ribosomal protein S6 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rpsF PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-08
Identity = 33/98 (33.67%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 107 YETMVVLRPDMSEDERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNT 166
           YET+ +LRPD+++++      KY+ LL   GA  +EV N+G   LAY IKK+        
Sbjct: 5   YETLYILRPDLTDEQVELAIAKYQNLLQEQGATDLEVQNRGKRRLAYEIKKQR------- 64

Query: 167 YLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFK 205
             DG  + F Y    +++A+LE  ++  ++V+R ++ K
Sbjct: 65  --DGFYVQFNYNAPGKAIAILERAMRLSEEVIRYLTVK 93

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BLAST of IVF0012583 vs. ExPASy Swiss-Prot
Match: P73636 (30S ribosomal protein S6 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpsF PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-07
Identity = 35/106 (33.02%), Postives = 57/106 (53.77%), Query Frame = 0


Query: 104 LRKYETMVVLRPDMSEDERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGE 163
           +  YE MV+LRPD++E+       KY+E L    A  V V   G   LAY I++ N    
Sbjct: 3   VNSYELMVILRPDLNEERVSQEVTKYQEFLTNNAAEEVSVKVWGKRRLAYQIRRFN---- 62

Query: 164 TNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRK 210
                DGI +LF +  + + +A++E  ++ +D+V+R +S K+   K
Sbjct: 63  -----DGIYVLFNFNGEGQQIALIERDMRLNDNVMRFLSIKLTPEK 99

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BLAST of IVF0012583 vs. ExPASy TrEMBL
Match: A0A5D3C6V7 (30S ribosomal protein S6 alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001770 PE=3 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 2.5e-110
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60
           MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60

Query: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMAVLEATLQADDDVVRSMSFKVRKRKF 211
           PESMAVLEATLQADDDVVRSMSFKVRKRKF
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFKVRKRKF 210

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BLAST of IVF0012583 vs. ExPASy TrEMBL
Match: A0A1S4DT54 (30S ribosomal protein S6 alpha, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107990347 PE=3 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 2.5e-110
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60
           MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60

Query: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMAVLEATLQADDDVVRSMSFKVRKRKF 211
           PESMAVLEATLQADDDVVRSMSFKVRKRKF
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFKVRKRKF 210

[Close]

BLAST of IVF0012583 vs. ExPASy TrEMBL
Match: A0A0A0KK24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148810 PE=3 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 2.5e-105
Identity = 202/210 (96.19%), Postives = 205/210 (97.62%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60
           MAFTSTLTATSSTSPLSSKSP L PFTNQISFPF LKLSKPLFSP GIG ALG+GLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALE+KEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMAVLEATLQADDDVVRSMSFKVRKRKF 211
           PESMAVLEATLQADDDVVRSMSFKVRKRKF
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFKVRKRKF 210

[Close]

BLAST of IVF0012583 vs. ExPASy TrEMBL
Match: A0A6J1K3V4 (30S ribosomal protein S6 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111491447 PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.4e-94
Identity = 180/210 (85.71%), Postives = 193/210 (91.90%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60
           MAFTSTLTATSS SPLSSK  SLP FT  ISFPFTL+ SK LFSPDGIG ALG+GLSVKA
Sbjct: 1   MAFTSTLTATSSASPLSSKPHSLPQFTPHISFPFTLRSSKSLFSPDGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGSFF+GG G++DEPP  PGTGFA  LEDKEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFQGGFGTEDEPPTSPGTGFAIDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLA T+KYEELLVAGG MYVEVF+KG++PLAYSIKKKNKAGETNTYLDGI+LLFTYFTK
Sbjct: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180

Query: 181 PESMAVLEATLQADDDVVRSMSFKVRKRKF 211
           PESM +LEATLQADDDVVRSMSFKVRKRK+
Sbjct: 181 PESMGILEATLQADDDVVRSMSFKVRKRKY 210

[Close]

BLAST of IVF0012583 vs. ExPASy TrEMBL
Match: A0A6J1H3R6 (30S ribosomal protein S6 alpha, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111459837 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 7.4e-94
Identity = 181/210 (86.19%), Postives = 193/210 (91.90%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60
           MAFTSTLTATSSTSPLSSK  SLP FT  ISFPFTL+ SK LFSPDGI  ALG+GLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKPLSLPQFTPHISFPFTLRSSKSLFSPDGIDPALGLGLSVKA 60

Query: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGSFF+GG G++DEPPA PGTGFA  LEDKEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLA T+KYEELLVAGG MYVEVF+KG++PLAYSIKKKNKAGETNTYLDGI+LLFTYFTK
Sbjct: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180

Query: 181 PESMAVLEATLQADDDVVRSMSFKVRKRKF 211
           PESM VLEA LQADDDVVRSMSFKVRKRK+
Sbjct: 181 PESMGVLEAALQADDDVVRSMSFKVRKRKY 210

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BLAST of IVF0012583 vs. NCBI nr
Match: XP_016898885.1 (PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Cucumis melo] >KAA0042673.1 30S ribosomal protein S6 alpha [Cucumis melo var. makuwa] >TYK06076.1 30S ribosomal protein S6 alpha [Cucumis melo var. makuwa])

HSP 1 Score: 403 bits (1036), Expect = 1.68e-141
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60
           MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60

Query: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMAVLEATLQADDDVVRSMSFKVRKRKF 210
           PESMAVLEATLQADDDVVRSMSFKVRKRKF
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFKVRKRKF 210

[Close]

BLAST of IVF0012583 vs. NCBI nr
Match: XP_031741227.1 (30S ribosomal protein S6 alpha, chloroplastic [Cucumis sativus])

HSP 1 Score: 376 bits (965), Expect = 2.44e-130
Identity = 197/208 (94.71%), Postives = 201/208 (96.63%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60
           MAFTSTLTATSSTSPLSSKSP L PFTNQISFPF LKLSKPLFSP GIG ALG+GLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALE+KEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMAVLEATLQADDDVVRSMSFKVRKR 208
           PESMAVLEATLQADDDVVRSMSFK  K+
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFKQWKK 208

[Close]

BLAST of IVF0012583 vs. NCBI nr
Match: KAE8647835.1 (hypothetical protein Csa_000386 [Cucumis sativus])

HSP 1 Score: 375 bits (963), Expect = 3.45e-130
Identity = 196/204 (96.08%), Postives = 199/204 (97.55%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60
           MAFTSTLTATSSTSPLSSKSP L PFTNQISFPF LKLSKPLFSP GIG ALG+GLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKSPFLTPFTNQISFPFALKLSKPLFSPYGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALE+KEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEEKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMAVLEATLQADDDVVRSMSFK 204
           PESMAVLEATLQADDDVVRSMSFK
Sbjct: 181 PESMAVLEATLQADDDVVRSMSFK 204

[Close]

BLAST of IVF0012583 vs. NCBI nr
Match: XP_038906485.1 (30S ribosomal protein S6 alpha, chloroplastic [Benincasa hispida])

HSP 1 Score: 373 bits (958), Expect = 1.30e-129
Identity = 193/210 (91.90%), Postives = 202/210 (96.19%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60
           MAFTSTLTATSSTSPLSSK  SLPPFT+Q+SFPFTLK  K LFSPDGIG ALG+GLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKPLSLPPFTHQVSFPFTLKPFKSLFSPDGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGSFFEGGLG++DEPPAPPGTGFA ALEDKEEPQCPPGLRKYETMVVLRPDMSED
Sbjct: 61  QTLEFSGSFFEGGLGTEDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLAFTEKYEELLVAGGAMYVEVF+KGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK
Sbjct: 121 ERLAFTEKYEELLVAGGAMYVEVFHKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180

Query: 181 PESMAVLEATLQADDDVVRSMSFKVRKRKF 210
           PESM +LEATLQADD+VVRSMSFKVRKRK+
Sbjct: 181 PESMGILEATLQADDNVVRSMSFKVRKRKY 210

[Close]

BLAST of IVF0012583 vs. NCBI nr
Match: XP_023534494.1 (30S ribosomal protein S6 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 351 bits (901), Expect = 6.32e-121
Identity = 182/210 (86.67%), Postives = 194/210 (92.38%), Query Frame = 0


Query: 1   MAFTSTLTATSSTSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKA 60
           MAFTSTLTATSSTSPLSSK  SLP FT  ISFPFTL+ SK LFSPDGIG ALG+GLSVKA
Sbjct: 1   MAFTSTLTATSSTSPLSSKPLSLPQFTPHISFPFTLRSSKSLFSPDGIGPALGLGLSVKA 60

Query: 61  QTLEFSGSFFEGGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSED 120
           QTLEFSGSFF+GG G++DEPPA PGTGFA  LEDKEEPQCPPGLRKYE+MVVLRPDMSED
Sbjct: 61  QTLEFSGSFFQGGFGTEDEPPASPGTGFAVDLEDKEEPQCPPGLRKYESMVVLRPDMSED 120

Query: 121 ERLAFTEKYEELLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTK 180
           ERLA T+KYEELLVAGG MYVEVF+KG++PLAYSIKKKNKAGETNTYLDGI+LLFTYFTK
Sbjct: 121 ERLALTQKYEELLVAGGGMYVEVFHKGVVPLAYSIKKKNKAGETNTYLDGISLLFTYFTK 180

Query: 181 PESMAVLEATLQADDDVVRSMSFKVRKRKF 210
           PESM VLEA LQADDDVVRSMSFKVRKRK+
Sbjct: 181 PESMGVLEAALQADDDVVRSMSFKVRKRKY 210

[Close]

BLAST of IVF0012583 vs. TAIR 10
Match: AT1G64510.1 (Translation elongation factor EF1B/ribosomal protein S6 family protein )

HSP 1 Score: 250.8 bits (639), Expect = 1.0e-66
Identity = 131/199 (65.83%), Postives = 154/199 (77.39%), Query Frame = 0


Query: 12  STSPLSSKSPSLPPFTNQISFPFTLKLSKPLFSPDGIGSALGIGLSVKAQTLEFSGSFFE 71
           S+ PL S S SL PF ++         SKP+ +   I    G    VK+Q L+FSG+FFE
Sbjct: 19  SSQPLLSFSHSLRPFISK---------SKPMCA--SIQKRDGSQFVVKSQALDFSGTFFE 78

Query: 72  GGLGSQDEPPAPPGTGFATALEDKEEPQCPPGLRKYETMVVLRPDMSEDERLAFTEKYEE 131
           GG GS D+P +P G+G +TALEDK EPQCPPGLR+YETM VLRPDMSEDERL  T+KYEE
Sbjct: 79  GGFGSDDDPTSPSGSGVSTALEDKPEPQCPPGLRQYETMAVLRPDMSEDERLGLTQKYEE 138

Query: 132 LLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATL 191
           LLVAGG MYVEVFN+G+IPLAYSI+KKNKAGETNTYLDGI LLFTYFTKPES+  LE  L
Sbjct: 139 LLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPESIVPLETVL 198

Query: 192 QADDDVVRSMSFKVRKRKF 211
            ADDD++RS SFK++KRK+
Sbjct: 199 TADDDIIRSSSFKIKKRKY 206

The following BLAST results are available for this feature:

BLAST of IVF0012583 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VY91	1.4e-65	65.83	30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
P82403	1.2e-61	63.51	30S ribosomal protein S6 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=RP...	[more]
Q3MBE2	7.1e-09	33.67	30S ribosomal protein S6 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937)...	[more]
Q8YMX2	1.2e-08	33.67	30S ribosomal protein S6 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)...	[more]
P73636	1.0e-07	33.02	30S ribosomal protein S6 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111...	[more]

BLAST of IVF0012583 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C6V7	2.5e-110	100.00	30S ribosomal protein S6 alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S4DT54	2.5e-110	100.00	30S ribosomal protein S6 alpha, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1079...	[more]
A0A0A0KK24	2.5e-105	96.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148810 PE=3 SV=1	[more]
A0A6J1K3V4	4.4e-94	85.71	30S ribosomal protein S6 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1H3R6	7.4e-94	86.19	30S ribosomal protein S6 alpha, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of IVF0012583 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016898885.1	1.68e-141	100.00	PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Cucumis melo] >KAA0042...	[more]
XP_031741227.1	2.44e-130	94.71	30S ribosomal protein S6 alpha, chloroplastic [Cucumis sativus]	[more]
KAE8647835.1	3.45e-130	96.08	hypothetical protein Csa_000386 [Cucumis sativus]	[more]
XP_038906485.1	1.30e-129	91.90	30S ribosomal protein S6 alpha, chloroplastic [Benincasa hispida]	[more]
XP_023534494.1	6.32e-121	86.67	30S ribosomal protein S6 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of IVF0012583 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64510.1	1.0e-66	65.83	Translation elongation factor EF1B/ribosomal protein S6 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014717	Translation elongation factor EF1B/ribosomal protein S6	GENE3D	3.30.70.60		coord: 103..210 e-value: 2.7E-17 score: 64.6
IPR000529	Ribosomal protein S6	PFAM	PF01250	Ribosomal_S6	coord: 106..204 e-value: 1.7E-16 score: 60.3
IPR000529	Ribosomal protein S6	PANTHER	PTHR21011	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6	coord: 19..210
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR21011:SF15	30S RIBOSOMAL PROTEIN S6 ALPHA, CHLOROPLASTIC	coord: 19..210
None	No IPR available	CDD	cd15487	bS6_chloro_cyano	coord: 104..205 e-value: 1.03962E-35 score: 119.235
IPR020814	Ribosomal protein S6, plastid/chloroplast	HAMAP	MF_00360	Ribosomal_S6	coord: 104..207 score: 13.90048
IPR035980	Ribosomal protein S6 superfamily	SUPERFAMILY	54995	Ribosomal protein S6	coord: 104..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012583.1	IVF0012583.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome