IVF0012563 (gene) Melon (IVF77) v1

Overview


Name	IVF0012563
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Location	chr10: 26520606 .. 26521676 (+)
RNA-Seq Expression	IVF0012563
Synteny	IVF0012563

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGGTCCTACCCAAGGTCCATCTGTAGGGGAATCTAGTACCCTAGGATTCGAGGTGGGGCAGGAAACGAGCAGTTTGCGAGAACTACACAGGAAATAGGAAGGCCAGATAGAGCAGAGCCTAGTGATCAAGAAAAGGCATACGGAATTGAACGGCTGAAGAAGTTAGGGGCTACAGTGTTTGAGGGTTCCACAGATCCAGCTGATGCAGAGAAATGGTTGAATATGCTTGAAAAGTGTTTTGATGTGATGAATTGTTATGAGGAGCGAAAGATTAGATTGGCCACATTTTTGTTGCAAAAAGAGGCTGAAGGATGGTGGAAATCTATATTAGCAAGGCGCAGTGATGCACGTGCTTTTGACTGGCAGACTTTTAGAGGCATATTCGAAATAAGTATTATCCCAGCACATACTGCGAAGCCAAGAGGGATGAATTTCTGGGGTTGAAACAAGGATCACTTTCAGTGGCTGAGTATGAGAGGAAGTATACCGAGCTTTCACGGTATGCTGACGTTATTGTAGCTTCTGAGAGTGACAGGTGCCGAAGGTTTGAAAGAGGGTTGCGTTTTGAAATACGTACCCCAGTTACAGCCATTGCTAAGTGGACGAATTTCTCTCAGTTAGTGGAGACTGCCCTTCGTGTGGAGCAGAGTATAACAGAAGAGAAATCGCAGTGGAGCTTAGTCGTGGGACTTCAACAGCTAGTGGATTTAGAGGCCGTGAGCAGCGGAGGTTCACGCCTGGGATAAATATTTCAAGCCATCAAGATTTTAAGAATCGCTCTGGAGGCCAAGCATCGAGTAACATGAGTTATGGTAGTGTTTTTCAGAGACAGAGCCAGAGAATACCTAGTCAACACATTAGATCAACAATAAGATCGCAACCAGGTCAGGAGTCCATTGCTAGTACCGTCAGGCGAACACCATGCACGAGTTGTGGCAGGAACCATCGGGGTCAGTGTTTGGTAGGTGCCAGTGTATGTTACCAGTGCGGACAGCCAGGACATTTCAAGAAAGATTGTCCGCAGTTGAACATGACAGTTCAGAGAGATCAGGGAGTTGGGTCCTAG

mRNA sequence

ATGCAAGGTCCTACCCAAGGTCCATCTTATTATCCCAGCACATACTGCGAAGCCAAGAGGGATGAATTTCTGGGGTTGAAACAAGGATCACTTTCAGTGGCTGAGTATGAGAGGAAGTATACCGAGCTTTCACGGTATGCTGACGTTATTGTAGCTTCTGAGAGTGACAGGTGCCGAAGGTTTGAAAGAGGGTTGCTGGACGAATTTCTCTCAGTTAGTGGAGACTGCCCTTCGTGTGGAGCAGAGTATAACAGAAGAGAAATCGCAGTGGAGCTTAGCCGTGAGCAGCGGAGGTTCACGCCTGGGATAAATATTTCAAGCCATCAAGATTTTAAGAATCGCTCTGGAGGCCAAGCATCGAGTAACATGAGTTATGGTAGTGTTTTTCAGAGACAGAGCCAGAGAATACCTAGTCAACACATTAGATCAACAATAAGATCGCAACCAGGTCAGGAGTCCATTGCTAGTACCGTCAGGCGAACACCATGCACGAGTTGTGGCAGGAACCATCGGGGACATTTCAAGAAAGATTGTCCGCAGTTGAACATGACAGTTCAGAGAGATCAGGGAGTTGGGTCCTAG

Coding sequence (CDS)

ATGCAAGGTCCTACCCAAGGTCCATCTTATTATCCCAGCACATACTGCGAAGCCAAGAGGGATGAATTTCTGGGGTTGAAACAAGGATCACTTTCAGTGGCTGAGTATGAGAGGAAGTATACCGAGCTTTCACGGTATGCTGACGTTATTGTAGCTTCTGAGAGTGACAGGTGCCGAAGGTTTGAAAGAGGGTTGCTGGACGAATTTCTCTCAGTTAGTGGAGACTGCCCTTCGTGTGGAGCAGAGTATAACAGAAGAGAAATCGCAGTGGAGCTTAGCCGTGAGCAGCGGAGGTTCACGCCTGGGATAAATATTTCAAGCCATCAAGATTTTAAGAATCGCTCTGGAGGCCAAGCATCGAGTAACATGAGTTATGGTAGTGTTTTTCAGAGACAGAGCCAGAGAATACCTAGTCAACACATTAGATCAACAATAAGATCGCAACCAGGTCAGGAGTCCATTGCTAGTACCGTCAGGCGAACACCATGCACGAGTTGTGGCAGGAACCATCGGGGACATTTCAAGAAAGATTGTCCGCAGTTGAACATGACAGTTCAGAGAGATCAGGGAGTTGGGTCCTAG

Protein sequence

MQGPTQGPSYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDEFLSVSGDCPSCGAEYNRREIAVELSREQRRFTPGINISSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHRGHFKKDCPQLNMTVQRDQGVGS

Homology

[Close]

BLAST of IVF0012563 vs. ExPASy TrEMBL
Match: A0A5A7TA17 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G003160 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.4e-75
Identity = 159/212 (75.00%), Postives = 164/212 (77.36%), Query Frame = 0


Query: 10  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDEF 69
           YYPSTYCEAKRDEFLGLKQGSLSV EYERKYTELSRYADVIVASESDRCR          
Sbjct: 177 YYPSTYCEAKRDEFLGLKQGSLSVVEYERKYTELSRYADVIVASESDRCR---------- 236

Query: 70  LSVSGDCPSCGAEYNRREIAV-ELS-----------REQRRFTPGINISSHQDFKNRSGG 129
              SGDCPSCGAEYNRRE +V ELS           REQRRFTPGINISS QDFKNRSGG
Sbjct: 237 ---SGDCPSCGAEYNRREKSVAELSHGTSTASGFRGREQRRFTPGINISSRQDFKNRSGG 296

Query: 130 QASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHR------ 189
           QAS N+SYGSVFQRQSQRIPSQ  RST+RSQPGQES+ASTVR+TPCTSCGRNHR      
Sbjct: 297 QASRNVSYGSVFQRQSQRIPSQPTRSTVRSQPGQESVASTVRQTPCTSCGRNHRGQCLVG 356

Query: 190 ----------GHFKKDCPQLNMTVQRDQGVGS 194
                     GH KKDCPQLNMTVQRDQGVGS
Sbjct: 357 VGVCYQCGQQGHCKKDCPQLNMTVQRDQGVGS 375

[Close]

BLAST of IVF0012563 vs. ExPASy TrEMBL
Match: A0A5A7TW42 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1770G00050 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.9e-72
Identity = 149/173 (86.13%), Postives = 149/173 (86.13%), Query Frame = 0


Query: 10  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDEF 69
           YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCR          
Sbjct: 167 YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCR---------- 226

Query: 70  LSVSGDCPSCGAEYNRREIAVELS-----------REQRRFTPGINISSHQDFKNRSGGQ 129
              SGDCPSCGAEYNRREIAVELS           REQRRFTPGINISSHQDFKNRSGGQ
Sbjct: 227 ---SGDCPSCGAEYNRREIAVELSRGTSTASGFRGREQRRFTPGINISSHQDFKNRSGGQ 286

Query: 130 ASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHR 172
           ASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHR
Sbjct: 287 ASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHR 326

[Close]

BLAST of IVF0012563 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 9.6e-72
Identity = 156/224 (69.64%), Postives = 161/224 (71.88%), Query Frame = 0


Query: 10  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDE- 69
           YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVI+ASESDRCRRFERGL  E 
Sbjct: 149 YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIIASESDRCRRFERGLRFEI 208

Query: 70  ------------FLSVSGDCPSCGAEYNRREIAVELS-----------REQRRFTPGINI 129
                       F  +              + AVELS           REQRRFTPGINI
Sbjct: 209 RTPVTAIAKWTNFSQLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFTPGINI 268

Query: 130 SSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTS 189
           SS QDFKNRSGGQAS N+SYGSVFQRQSQRIPSQ IRST+RSQPGQESIASTVRR PCTS
Sbjct: 269 SSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTS 328

Query: 190 CGRNHR----------------GHFKKDCPQLNMTVQRDQGVGS 194
           CGRNHR                GHFKKDCPQLNMTVQRDQGVGS
Sbjct: 329 CGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGS 372

[Close]

BLAST of IVF0012563 vs. ExPASy TrEMBL
Match: A0A5D3BS67 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00050 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 9.6e-72
Identity = 156/224 (69.64%), Postives = 161/224 (71.88%), Query Frame = 0


Query: 10  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDE- 69
           YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVI+ASESDRCRRFERGL  E 
Sbjct: 187 YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIIASESDRCRRFERGLRFEI 246

Query: 70  ------------FLSVSGDCPSCGAEYNRREIAVELS-----------REQRRFTPGINI 129
                       F  +              + AVELS           REQRRFTPGINI
Sbjct: 247 RTPVTAIAKWTNFSQLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFTPGINI 306

Query: 130 SSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTS 189
           SS QDFKNRSGGQAS N+SYGSVFQRQSQRIPSQ IRST+RSQPGQESIASTVRR PCTS
Sbjct: 307 SSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTS 366

Query: 190 CGRNHR----------------GHFKKDCPQLNMTVQRDQGVGS 194
           CGRNHR                GHFKKDCPQLNMTVQRDQGVGS
Sbjct: 367 CGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGS 410

[Close]

BLAST of IVF0012563 vs. ExPASy TrEMBL
Match: A0A5D3BHI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00450 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 9.6e-72
Identity = 156/224 (69.64%), Postives = 161/224 (71.88%), Query Frame = 0


Query: 10  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDE- 69
           YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVI+ASESDRCRRFERGL  E 
Sbjct: 187 YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIIASESDRCRRFERGLRFEI 246

Query: 70  ------------FLSVSGDCPSCGAEYNRREIAVELS-----------REQRRFTPGINI 129
                       F  +              + AVELS           REQRRFTPGINI
Sbjct: 247 RTPVTAIAKWTNFSQLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFTPGINI 306

Query: 130 SSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTS 189
           SS QDFKNRSGGQAS N+SYGSVFQRQSQRIPSQ IRST+RSQPGQESIASTVRR PCTS
Sbjct: 307 SSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTS 366

Query: 190 CGRNHR----------------GHFKKDCPQLNMTVQRDQGVGS 194
           CGRNHR                GHFKKDCPQLNMTVQRDQGVGS
Sbjct: 367 CGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGS 410

[Close]

BLAST of IVF0012563 vs. NCBI nr
Match: KAA0038417.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 291 bits (746), Expect = 5.73e-88
Identity = 159/212 (75.00%), Postives = 164/212 (77.36%), Query Frame = 0


Query: 10  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDEF 69
           YYPSTYCEAKRDEFLGLKQGSLSV EYERKYTELSRYADVIVASESDRCR          
Sbjct: 177 YYPSTYCEAKRDEFLGLKQGSLSVVEYERKYTELSRYADVIVASESDRCR---------- 236

Query: 70  LSVSGDCPSCGAEYNRREIAV-ELS-----------REQRRFTPGINISSHQDFKNRSGG 129
              SGDCPSCGAEYNRRE +V ELS           REQRRFTPGINISS QDFKNRSGG
Sbjct: 237 ---SGDCPSCGAEYNRREKSVAELSHGTSTASGFRGREQRRFTPGINISSRQDFKNRSGG 296

Query: 130 QASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTSCGRNHRG----- 189
           QAS N+SYGSVFQRQSQRIPSQ  RST+RSQPGQES+ASTVR+TPCTSCGRNHRG     
Sbjct: 297 QASRNVSYGSVFQRQSQRIPSQPTRSTVRSQPGQESVASTVRQTPCTSCGRNHRGQCLVG 356

Query: 190 -----------HFKKDCPQLNMTVQRDQGVGS 193
                      H KKDCPQLNMTVQRDQGVGS
Sbjct: 357 VGVCYQCGQQGHCKKDCPQLNMTVQRDQGVGS 375

[Close]

BLAST of IVF0012563 vs. NCBI nr
Match: KAA0050492.1 (uncharacterized protein E6C27_scaffold175G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 274 bits (701), Expect = 1.06e-87
Identity = 154/224 (68.75%), Postives = 159/224 (70.98%), Query Frame = 0


Query: 10  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDE- 69
           YYPSTYCEAKRDEFLGLKQGSLSV EYERKYTELSRYADVI+ASESDRCRRFERGL  E 
Sbjct: 187 YYPSTYCEAKRDEFLGLKQGSLSVGEYERKYTELSRYADVIIASESDRCRRFERGLRFEI 246

Query: 70  ------------FLSVSGDCPSCGAEYNRREIAVELSR-----------EQRRFTPGINI 129
                       F  +              + AVELSR           EQRRFTPGINI
Sbjct: 247 RTPVTAIAKWTNFSQLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFTPGINI 306

Query: 130 SSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTS 189
           SS QDFKNRSGGQAS N+SYGSVFQRQSQRIPSQ IRST+RSQPGQESIASTVRR PCTS
Sbjct: 307 SSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTS 366

Query: 190 CGRNHRG----------------HFKKDCPQLNMTVQRDQGVGS 193
           CGRNHRG                HFKKDC QLNMTVQRDQGVGS
Sbjct: 367 CGRNHRGQCLVGAGVCYQCGQPGHFKKDCSQLNMTVQRDQGVGS 410

[Close]

BLAST of IVF0012563 vs. NCBI nr
Match: KAA0045364.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 277 bits (709), Expect = 1.35e-87
Identity = 155/224 (69.20%), Postives = 161/224 (71.88%), Query Frame = 0


Query: 10  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDE- 69
           YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYA+VI+ASESDRCRRFERGL  E 
Sbjct: 58  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYAEVIIASESDRCRRFERGLRFEI 117

Query: 70  ------------FLSVSGDCPSCGAEYNRREIAVELSR-----------EQRRFTPGINI 129
                       F  +              + AVELSR           EQRRFTPGINI
Sbjct: 118 RTPVTAIVKWTNFSQLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFTPGINI 177

Query: 130 SSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTS 189
           SS QDFKNRSGGQAS N+SYGSVFQRQSQRIPSQ IRST+RSQPGQESIASTVRR PCTS
Sbjct: 178 SSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTS 237

Query: 190 CGRNHRG----------------HFKKDCPQLNMTVQRDQGVGS 193
           CGRNHRG                HFKKDCPQLNMTVQRDQGVGS
Sbjct: 238 CGRNHRGECLVGAGGCYQCGQPGHFKKDCPQLNMTVQRDQGVGS 281

[Close]

BLAST of IVF0012563 vs. NCBI nr
Match: TYK03606.1 (uncharacterized protein E5676_scaffold1369G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 275 bits (703), Expect = 2.62e-87
Identity = 155/224 (69.20%), Postives = 160/224 (71.43%), Query Frame = 0


Query: 10  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDE- 69
           YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVI+ASESDRCRRFERGL  E 
Sbjct: 149 YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIIASESDRCRRFERGLRFEI 208

Query: 70  ------------FLSVSGDCPSCGAEYNRREIAVELSR-----------EQRRFTPGINI 129
                       F  +              + AVELSR           EQRRFTPGINI
Sbjct: 209 RTPVTAIAKWTNFSQLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFTPGINI 268

Query: 130 SSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTS 189
           SS QDFKNRSGGQAS N+SYGSVFQRQSQRIPSQ IRST+RSQPGQESIASTVRR PCTS
Sbjct: 269 SSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTS 328

Query: 190 CGRNHRG----------------HFKKDCPQLNMTVQRDQGVGS 193
           CGRNHRG                HFKKDC QLNMTVQRDQGVGS
Sbjct: 329 CGRNHRGQCLVGAGVCYQCGQPGHFKKDCLQLNMTVQRDQGVGS 372

[Close]

BLAST of IVF0012563 vs. NCBI nr
Match: KAA0040726.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 279 bits (713), Expect = 1.09e-86
Identity = 156/224 (69.64%), Postives = 161/224 (71.88%), Query Frame = 0


Query: 10  YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLLDE- 69
           YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVI+ASESDRCRRFERGL  E 
Sbjct: 149 YYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIIASESDRCRRFERGLRFEI 208

Query: 70  ------------FLSVSGDCPSCGAEYNRREIAVELSR-----------EQRRFTPGINI 129
                       F  +              + AVELSR           EQRRFTPGINI
Sbjct: 209 RTPVTAIAKWTNFSQLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFTPGINI 268

Query: 130 SSHQDFKNRSGGQASSNMSYGSVFQRQSQRIPSQHIRSTIRSQPGQESIASTVRRTPCTS 189
           SS QDFKNRSGGQAS N+SYGSVFQRQSQRIPSQ IRST+RSQPGQESIASTVRR PCTS
Sbjct: 269 SSRQDFKNRSGGQASRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTS 328

Query: 190 CGRNHRG----------------HFKKDCPQLNMTVQRDQGVGS 193
           CGRNHRG                HFKKDCPQLNMTVQRDQGVGS
Sbjct: 329 CGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQLNMTVQRDQGVGS 372

The following BLAST results are available for this feature:

BLAST of IVF0012563 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012563 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TA17	2.4e-75	75.00	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7TW42	1.9e-72	86.13	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17...	[more]
A0A5A7U2V7	9.6e-72	69.64	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3BS67	9.6e-72	69.64	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50...	[more]
A0A5D3BHI1	9.6e-72	69.64	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of IVF0012563 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038417.1	5.73e-88	75.00	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050492.1	1.06e-87	68.75	uncharacterized protein E6C27_scaffold175G001240 [Cucumis melo var. makuwa]	[more]
KAA0045364.1	1.35e-87	69.20	Gag protease polyprotein-like protein [Cucumis melo var. makuwa]	[more]
TYK03606.1	2.62e-87	69.20	uncharacterized protein E5676_scaffold1369G00240 [Cucumis melo var. makuwa]	[more]
KAA0040726.1	1.09e-86	69.64	Gag protease polyprotein-like protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0012563 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 10..66 e-value: 1.0E-5 score: 25.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..162
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 13..172
None	No IPR available	PANTHER	PTHR34482:SF4	POLYMERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	coord: 13..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012563.1	IVF0012563.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity