IVF0012524 (gene) Melon (IVF77) v1

Overview
NameIVF0012524
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionWound-responsive family protein
Locationchr12: 21640113 .. 21640331 (-)
RNA-Seq ExpressionIVF0012524
SyntenyIVF0012524
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGATCCAACGGTGAAGCAAGAGGCGATGTTGAAGGGGCTGAGAGATCATCATCTTCATCATCATCATCATCATCATCATCATCATCCAGGATCATCTTCAAATCAGACGACTGCGAATCCGGTAGTGGTGTCGTCGTCGAAGGCGGAGCAACATAAACGGGCGGAGGAGTCTTTAAGAACGGTTATGTATTTGAGCTGTTGGGGCCCTAACTAA

mRNA sequence

ATGAAAGATCCAACGGTGAAGCAAGAGGCGATGTTGAAGGGGCTGAGAGATCATCATCTTCATCATCATCATCATCATCATCATCATCATCCAGGATCATCTTCAAATCAGACGACTGCGAATCCGGTAGTGGTGTCGTCGTCGAAGGCGGAGCAACATAAACGGGCGGAGGAGTCTTTAAGAACGGTTATGTATTTGAGCTGTTGGGGCCCTAACTAA

Coding sequence (CDS)

ATGAAAGATCCAACGGTGAAGCAAGAGGCGATGTTGAAGGGGCTGAGAGATCATCATCTTCATCATCATCATCATCATCATCATCATCATCCAGGATCATCTTCAAATCAGACGACTGCGAATCCGGTAGTGGTGTCGTCGTCGAAGGCGGAGCAACATAAACGGGCGGAGGAGTCTTTAAGAACGGTTATGTATTTGAGCTGTTGGGGCCCTAACTAA

Protein sequence

MKDPTVKQEAMLKGLRDHHLHHHHHHHHHHPGSSSNQTTANPVVVSSSKAEQHKRAEESLRTVMYLSCWGPN
Homology
BLAST of IVF0012524 vs. ExPASy TrEMBL
Match: A0A0A0LV05 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G071850 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.1e-16
Identity = 56/73 (76.71%), Postives = 59/73 (80.82%), Query Frame = 0

Query: 1  MKDPTVKQEAMLKG-LRDHHLHHHHHHHHHHPGSSSNQTTANPVVVSSSKAEQHKRAEES 60
          MKDPT+KQE ML+G LRDH  HHHHH   HH  SSSNQ TA PVV+  SKAEQ KRAEES
Sbjct: 1  MKDPTLKQEPMLEGPLRDH--HHHHHRRRHHSESSSNQ-TAVPVVL--SKAEQLKRAEES 60

Query: 61 LRTVMYLSCWGPN 73
          LRTVMYLSCWGPN
Sbjct: 61 LRTVMYLSCWGPN 68

BLAST of IVF0012524 vs. ExPASy TrEMBL
Match: A0A022QKW0 (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a018114mg PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.4e-05
Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = 0

Query: 1  MKDPTVKQEAMLKGLRDHHLHHHHHHHHHHPGSSSNQTTANPVVVSSS--KAEQHKRAEE 60
          +KDP  K++  +K L+D + +           SSS Q       + S+  KA++ K+AEE
Sbjct: 16 IKDPASKRDTNIKTLKDSYAY----------SSSSRQARKLSAAIESTGLKADKLKQAEE 75

Query: 61 SLRTVMYLSCWGPN 73
          SLRTVMYLSCWGPN
Sbjct: 76 SLRTVMYLSCWGPN 79

BLAST of IVF0012524 vs. ExPASy TrEMBL
Match: A0A1U7XVH6 (uncharacterized protein LOC104237931 OS=Nicotiana sylvestris OX=4096 GN=LOC104237931 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 32 GSSSNQTTANPVVVSSSKAEQHKRAEESLRTVMYLSCWGP 72
          GSSS QT      + ++K+E+ KRAEESLRTVMYLSCWGP
Sbjct: 43 GSSSRQTRKFSGALKAAKSEKIKRAEESLRTVMYLSCWGP 82

BLAST of IVF0012524 vs. ExPASy TrEMBL
Match: A0A1J3JWK6 (Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR4091_c0_g1_i1_g.10823 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.4e-04
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 0

Query: 35  SNQTTANPVVVSSSKAEQHKRAEESLRTVMYLSCWGPN 73
           +N+ +++  VV+S   E+ K+AEESLRTVMYLSCWGPN
Sbjct: 87  ANRFSSSSTVVASGNVEKAKQAEESLRTVMYLSCWGPN 124

BLAST of IVF0012524 vs. NCBI nr
Match: KGN64622.1 (hypothetical protein Csa_013237 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 2.75e-24
Identity = 55/73 (75.34%), Postives = 58/73 (79.45%), Query Frame = 0

Query: 1  MKDPTVKQEAMLKG-LRDHHLHHHHHHHHHHPGSSSNQTTANPVVVSSSKAEQHKRAEES 60
          MKDPT+KQE ML+G LRDH  HHHHH   HH  SSSNQT   PVV+S  KAEQ KRAEES
Sbjct: 1  MKDPTLKQEPMLEGPLRDH--HHHHHRRRHHSESSSNQTAV-PVVLS--KAEQLKRAEES 60

Query: 61 LRTVMYLSCWGPN 72
          LRTVMYLSCWGPN
Sbjct: 61 LRTVMYLSCWGPN 68

BLAST of IVF0012524 vs. NCBI nr
Match: KAG7019649.1 (hypothetical protein SDJN02_18612, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.3 bits (181), Expect = 1.74e-15
Identity = 42/78 (53.85%), Postives = 49/78 (62.82%), Query Frame = 0

Query: 1  MKDPTVKQEAMLKGLRDHHLHHHHHHHHHHPGSSSNQ------TTANPVVVSSSKAEQHK 60
          MKDPT K+EAMLK +RD            H GSSSNQ      +  +     ++KAE+ K
Sbjct: 13 MKDPTAKREAMLKAVRD------------HSGSSSNQGARGFYSGMDSSAAMAAKAEKLK 72

Query: 61 RAEESLRTVMYLSCWGPN 72
          RAEESLRTVMYLSCWGPN
Sbjct: 73 RAEESLRTVMYLSCWGPN 78

BLAST of IVF0012524 vs. NCBI nr
Match: KAG6573231.1 (hypothetical protein SDJN03_27118, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012404.1 hypothetical protein SDJN02_25156, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.9 bits (154), Expect = 7.57e-11
Identity = 36/77 (46.75%), Postives = 43/77 (55.84%), Query Frame = 0

Query: 1   MKDPTVKQEAMLKGLRDHHLHHHHHHHHHHPGSSSNQTTA-----NPVVVSSSKAEQHKR 60
           M D   ++E   KGLRD             P  SS+QTT        +   ++KAE+ KR
Sbjct: 66  MNDQRAEREPAAKGLRD-------------PSGSSSQTTGFCSAVGSIAAMAAKAEKVKR 125

Query: 61  AEESLRTVMYLSCWGPN 72
           AEESLRTVMYLSCWGPN
Sbjct: 126 AEESLRTVMYLSCWGPN 129

BLAST of IVF0012524 vs. NCBI nr
Match: EYU27888.1 (hypothetical protein MIMGU_mgv1a018114mg [Erythranthe guttata])

HSP 1 Score: 56.2 bits (134), Expect = 2.49e-08
Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = 0

Query: 1  MKDPTVKQEAMLKGLRDHHLHHHHHHHHHHPGSSSNQTTANPVVVSSS--KAEQHKRAEE 60
          +KDP  K++  +K L+D + +           SSS Q       + S+  KA++ K+AEE
Sbjct: 16 IKDPASKRDTNIKTLKDSYAY----------SSSSRQARKLSAAIESTGLKADKLKQAEE 75

Query: 61 SLRTVMYLSCWGPN 72
          SLRTVMYLSCWGPN
Sbjct: 76 SLRTVMYLSCWGPN 79

BLAST of IVF0012524 vs. NCBI nr
Match: XP_009790470.1 (PREDICTED: uncharacterized protein LOC104237931 [Nicotiana sylvestris])

HSP 1 Score: 54.3 bits (129), Expect = 1.53e-07
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 32 GSSSNQTTANPVVVSSSKAEQHKRAEESLRTVMYLSCWGP 71
          GSSS QT      + ++K+E+ KRAEESLRTVMYLSCWGP
Sbjct: 43 GSSSRQTRKFSGALKAAKSEKIKRAEESLRTVMYLSCWGP 82

BLAST of IVF0012524 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 43.5 bits (101), Expect = 8.3e-05
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 0

Query: 15 LRDHHLHHHHHHHHHHPGSSSNQTTANPVVVSSSKAEQHKRAEESLRTVMYLSCWGPN 73
          LR  + H  ++      G   + ++ +  V SS ++E+ K+AEESLRTVMYLSCWGPN
Sbjct: 33 LRSVNQHLRNNVRSVSQGKRFSSSSVSAAVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

BLAST of IVF0012524 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 42.4 bits (98), Expect = 1.9e-04
Identity = 17/19 (89.47%), Postives = 19/19 (100.00%), Query Frame = 0

Query: 54 KRAEESLRTVMYLSCWGPN 73
          K+AEESLRTVMYLSCWGP+
Sbjct: 65 KQAEESLRTVMYLSCWGPS 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LV052.1e-1676.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G071850 PE=4 SV=1[more]
A0A022QKW08.4e-0543.24Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a018114mg PE... [more]
A0A1U7XVH62.4e-0465.00uncharacterized protein LOC104237931 OS=Nicotiana sylvestris OX=4096 GN=LOC10423... [more]
A0A1J3JWK65.4e-0460.53Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR409... [more]
Match NameE-valueIdentityDescription
KGN64622.12.75e-2475.34hypothetical protein Csa_013237 [Cucumis sativus][more]
KAG7019649.11.74e-1553.85hypothetical protein SDJN02_18612, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6573231.17.57e-1146.75hypothetical protein SDJN03_27118, partial [Cucurbita argyrosperma subsp. sorori... [more]
EYU27888.12.49e-0843.24hypothetical protein MIMGU_mgv1a018114mg [Erythranthe guttata][more]
XP_009790470.11.53e-0765.00PREDICTED: uncharacterized protein LOC104237931 [Nicotiana sylvestris][more]
Match NameE-valueIdentityDescription
AT4G10270.18.3e-0544.83Wound-responsive family protein [more]
AT4G10265.11.9e-0489.47Wound-responsive family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 18..71
e-value: 2.8E-14
score: 53.9
IPR022251Protein of unknown function wound-inducedPANTHERPTHR33090DUF3774 DOMAIN PROTEIN-RELATEDcoord: 13..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..48
NoneNo IPR availablePANTHERPTHR33090:SF27SUBFAMILY NOT NAMEDcoord: 13..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0012524.2IVF0012524.2mRNA