IVF0012510 (gene) Melon (IVF77) v1

Overview


Name	IVF0012510
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Transposase
Location	chr08: 24495396 .. 24495782 (+)
RNA-Seq Expression	IVF0012510
Synteny	IVF0012510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAATACGAAACAAAGGGAAGAAATCGTCGGGGGATCGCTCTTTACCCCTGTACGAGAAAACTGGGTCTCGGGCAATCTCGATCGCGTTTTTTTGGGACGAGTACCAGAAGTCCTCGAGCTCAGCCCGTTTCCTTCGCTGCAAGTGCATTTCCAGTTGTTTTTGACACTGGACAAGCGTTCGCCACTCGTTGGAAGCATTGGCCATCTGTTGGACCGTTCTTGGTCGCACCTCATTTATCCCTCCAACGACCTCGCTTCTCGACCTATACCTTCGGAAAATGTGTCAAGGAGCATGCCAGGAGTGTGGGTTGAGGTTTTCGGAGTACAAGCCTCAAAGATTGAAAGACTTATGGCAATACGAAGCAAAGGGAAGAATTCGTAG

mRNA sequence

ATGGCGAATACGAAACAAAGGGAAGAAATCGTCGGGGGATCGCTCTTTACCCCTGTACGAGAAAACTGGGTCTCGGGCAATCTCGATCGCGTTTTTTTGGGACGAGTACCAGAAGTCCTCGAGCTCAGCCCGTTTCCTTCGCTGCAAGTGCATTTCCAGTTGTTTTTGACACTGGACAAGCGTTCGCCACTCGTTGGAAGCATTGGCCATCTGTTGGACCGTTCTTGGTCGCACCTCATTTATCCCTCCAACGACCTCGCTTCTCGACCTATACCTTCGGAAAATGTGTCAAGGAGCATGCCAGGAGTGTGGGTTGAGGTTTTCGGAGTACAAGCCTCAAAGATTGAAAGACTTATGGCAATACGAAGCAAAGGGAAGAATTCGTAG

Coding sequence (CDS)

ATGGCGAATACGAAACAAAGGGAAGAAATCGTCGGGGGATCGCTCTTTACCCCTGTACGAGAAAACTGGGTCTCGGGCAATCTCGATCGCGTTTTTTTGGGACGAGTACCAGAAGTCCTCGAGCTCAGCCCGTTTCCTTCGCTGCAAGTGCATTTCCAGTTGTTTTTGACACTGGACAAGCGTTCGCCACTCGTTGGAAGCATTGGCCATCTGTTGGACCGTTCTTGGTCGCACCTCATTTATCCCTCCAACGACCTCGCTTCTCGACCTATACCTTCGGAAAATGTGTCAAGGAGCATGCCAGGAGTGTGGGTTGAGGTTTTCGGAGTACAAGCCTCAAAGATTGAAAGACTTATGGCAATACGAAGCAAAGGGAAGAATTCGTAG

Protein sequence

MANTKQREEIVGGSLFTPVRENWVSGNLDRVFLGRVPEVLELSPFPSLQVHFQLFLTLDKRSPLVGSIGHLLDRSWSHLIYPSNDLASRPIPSENVSRSMPGVWVEVFGVQASKIERLMAIRSKGKNS

Homology

[Close]

BLAST of IVF0012510 vs. ExPASy TrEMBL
Match: A0A5A7T267 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001870 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.2e-24
Identity = 61/87 (70.11%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 33  LGRVPEVLELSPFPSLQVHFQLFLTLDKRSPLVGSIGHLLDRSWSHLIYPSNDLASRPIP 92
           LGR  +VLEL+PF S+ VHFQ FLT D+RSPL+ SIGHLLDR   HL  PSN+LASRPIP
Sbjct: 366 LGRTLKVLELNPFLSVHVHFQWFLTPDERSPLIESIGHLLDRFGLHLSSPSNELASRPIP 425

Query: 93  SENVSRSMPGVWVEVFGVQASKIERLM 120
            +N+S SMPGVWVE  GV+A KIERLM
Sbjct: 426 WKNLSGSMPGVWVEFIGVRAPKIERLM 452

[Close]

BLAST of IVF0012510 vs. ExPASy TrEMBL
Match: A0A5D3BQ75 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00560 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.3e-21
Identity = 62/116 (53.45%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 1   MANTKQREEIVGGSLFTPVRENWVSGNLDRVFLGRVPEVLELSPFPSLQVHFQLFLTLDK 60
           + NT+Q EE V G LFTP RENWV G L  VFLGR P+VLELSPFPSLQVHFQ FLT D+
Sbjct: 324 ITNTEQSEETVRGLLFTPGRENWVRGILAPVFLGRAPKVLELSPFPSLQVHFQWFLTPDE 383

Query: 61  RSPLVGSIGHLLDRSWSHLIYPSNDLASRPIPSENVSRSMPGVWVEVFGVQASKIE 117
           RS LVGSIGHLL      ++ P     +  +P   + ++  G W E  G+++S+ E
Sbjct: 384 RSLLVGSIGHLLIVLGRAIVLP----LTSSLPDLYLWKTCQGAWQEC-GLKSSEHE 434

[Close]

BLAST of IVF0012510 vs. ExPASy TrEMBL
Match: A0A5A7SRN5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G001510 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.7e-21
Identity = 60/93 (64.52%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 1   MANTKQREEIVGGSLFTPVRENWVSGNLDRVFLGRVPEVLELSPFPSLQVHFQLFLTLDK 60
           M+NTKQREE VGGSLFTP REN V   L  VF G+  EVLELSPFPSL+VHFQ FLT ++
Sbjct: 20  MSNTKQREETVGGSLFTPGRENLVWRILALVFFGQTMEVLELSPFPSLEVHFQWFLTQNE 79

Query: 61  RSPLVGSIGHLLDRSWSHLIYPSNDLASRPIPS 94
            SPLVGSIGH+LD   SHL   SN     P+P+
Sbjct: 80  CSPLVGSIGHVLDCFGSHLSSLSN---GGPLPN 109

[Close]

BLAST of IVF0012510 vs. ExPASy TrEMBL
Match: A0A5A7V5Z6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001940 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.9e-20
Identity = 57/82 (69.51%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 38  EVLELSPFPSLQVHFQLFLTLDKRSPLVGSIGHLLDRSWSHLIYPSNDLASRPIPSENVS 97
           +VLELS F SLQVHFQ FLT ++ SPLV SIGHLLDR       PSN+LASRPIP ENVS
Sbjct: 290 KVLELSSFLSLQVHFQCFLTPNECSPLVRSIGHLLDRFGLRHSSPSNELASRPIPLENVS 349

Query: 98  RSMPGVWVEVFGVQASKIERLM 120
            SMPGVWV+V G +A KIERL+
Sbjct: 350 GSMPGVWVQVLGARAPKIERLI 371

[Close]

BLAST of IVF0012510 vs. ExPASy TrEMBL
Match: A0A5A7V638 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001830 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.9e-14
Identity = 44/63 (69.84%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 26  GNLDRVFLGRVPEVLELSPFPSLQVHFQLFLTLDKRSPLVGSIGHLLDRSWSHLIYPSND 85
           G L R+FLGR  +VLELSPFPSLQVHFQ FLT D+RSP V SI HLLDR  SH   PSN+
Sbjct: 172 GILARIFLGRTLKVLELSPFPSLQVHFQWFLTPDERSPFVESISHLLDRYGSHHSSPSNE 231

Query: 86  LAS 89
           L S
Sbjct: 232 LVS 234

[Close]

BLAST of IVF0012510 vs. NCBI nr
Match: KAA0035525.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (302), Expect = 2.37e-29
Identity = 61/87 (70.11%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 33  LGRVPEVLELSPFPSLQVHFQLFLTLDKRSPLVGSIGHLLDRSWSHLIYPSNDLASRPIP 92
           LGR  +VLEL+PF S+ VHFQ FLT D+RSPL+ SIGHLLDR   HL  PSN+LASRPIP
Sbjct: 366 LGRTLKVLELNPFLSVHVHFQWFLTPDERSPLIESIGHLLDRFGLHLSSPSNELASRPIP 425

Query: 93  SENVSRSMPGVWVEVFGVQASKIERLM 119
            +N+S SMPGVWVE  GV+A KIERLM
Sbjct: 426 WKNLSGSMPGVWVEFIGVRAPKIERLM 452

[Close]

BLAST of IVF0012510 vs. NCBI nr
Match: KAA0032047.1 (hypothetical protein E6C27_scaffold134G001510 [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (269), Expect = 1.44e-27
Identity = 60/93 (64.52%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 1   MANTKQREEIVGGSLFTPVRENWVSGNLDRVFLGRVPEVLELSPFPSLQVHFQLFLTLDK 60
           M+NTKQREE VGGSLFTP REN V   L  VF G+  EVLELSPFPSL+VHFQ FLT ++
Sbjct: 20  MSNTKQREETVGGSLFTPGRENLVWRILALVFFGQTMEVLELSPFPSLEVHFQWFLTQNE 79

Query: 61  RSPLVGSIGHLLDRSWSHLIYPSNDLASRPIPS 93
            SPLVGSIGH+LD   SHL   SN     P+P+
Sbjct: 80  CSPLVGSIGHVLDCFGSHLSSLSN---GGPLPN 109

[Close]

BLAST of IVF0012510 vs. NCBI nr
Match: TYK01208.1 (uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (272), Expect = 3.66e-25
Identity = 62/116 (53.45%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 1   MANTKQREEIVGGSLFTPVRENWVSGNLDRVFLGRVPEVLELSPFPSLQVHFQLFLTLDK 60
           + NT+Q EE V G LFTP RENWV G L  VFLGR P+VLELSPFPSLQVHFQ FLT D+
Sbjct: 324 ITNTEQSEETVRGLLFTPGRENWVRGILAPVFLGRAPKVLELSPFPSLQVHFQWFLTPDE 383

Query: 61  RSPLVGSIGHLLDRSWSHLIYPSNDLASRPIPSENVSRSMPGVWVEVFGVQASKIE 116
           RS LVGSIGHLL      ++ P     +  +P   + ++  G W E  G+++S+ E
Sbjct: 384 RSLLVGSIGHLLIVLGRAIVLP----LTSSLPDLYLWKTCQGAWQEC-GLKSSEHE 434

[Close]

BLAST of IVF0012510 vs. NCBI nr
Match: KAA0062674.1 (uncharacterized protein E6C27_scaffold79G001940 [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (268), Expect = 1.95e-24
Identity = 57/82 (69.51%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 38  EVLELSPFPSLQVHFQLFLTLDKRSPLVGSIGHLLDRSWSHLIYPSNDLASRPIPSENVS 97
           +VLELS F SLQVHFQ FLT ++ SPLV SIGHLLDR       PSN+LASRPIP ENVS
Sbjct: 290 KVLELSSFLSLQVHFQCFLTPNECSPLVRSIGHLLDRFGLRHSSPSNELASRPIPLENVS 349

Query: 98  RSMPGVWVEVFGVQASKIERLM 119
            SMPGVWV+V G +A KIERL+
Sbjct: 350 GSMPGVWVQVLGARAPKIERLI 371

[Close]

BLAST of IVF0012510 vs. NCBI nr
Match: WP_206746731.1 (hypothetical protein, partial [Helicobacter pylori])

HSP 1 Score: 98.6 bits (244), Expect = 4.28e-24
Identity = 50/64 (78.12%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 1  MANTKQREEIVGGSLFTPVRENWVSGNLDRVFLGRVPEVLELSPFPSLQVHFQLFLTLDK 60
          M NT+QREE VGG LFTP REN V G   RVFLGR PEVLELSPFPSLQVHFQ FLT D+
Sbjct: 20 MTNTEQREETVGGPLFTPGRENRVRGIPPRVFLGRAPEVLELSPFPSLQVHFQWFLTPDE 79

Query: 61 RSPL 64
          RSPL
Sbjct: 80 RSPL 83

The following BLAST results are available for this feature:

BLAST of IVF0012510 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T267	2.2e-24	70.11	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001870 P...	[more]
A0A5D3BQ75	2.3e-21	53.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SRN5	6.7e-21	64.52	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V5Z6	1.9e-20	69.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V638	7.9e-14	69.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0012510 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035525.1	2.37e-29	70.11	transposase [Cucumis melo var. makuwa]	[more]
KAA0032047.1	1.44e-27	64.52	hypothetical protein E6C27_scaffold134G001510 [Cucumis melo var. makuwa]	[more]
TYK01208.1	3.66e-25	53.45	uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]	[more]
KAA0062674.1	1.95e-24	69.51	uncharacterized protein E6C27_scaffold79G001940 [Cucumis melo var. makuwa]	[more]
WP_206746731.1	4.28e-24	78.13	hypothetical protein, partial [Helicobacter pylori]	[more]

BLAST of IVF0012510 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012510.1	IVF0012510.1	mRNA