IVF0012501 (gene) Melon (IVF77) v1

Overview


Name	IVF0012501
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr09: 9048141 .. 9048413 (-)
RNA-Seq Expression	IVF0012501
Synteny	IVF0012501

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACACAAGAAACAGAGCAGAAAGTTAAATACCTAGGGGAAGAGATAAACGGAGGAAAAAGAAACGAAAAAAGAAAGATCAAGAACTCATCAGCGATGATATGGGTCTCCTCGTCGTGGGTCTTTGTCACCGAGAAGAAATGATGTGGAGATGAGAAGAATGGGATTAAGGTTGGGATTTTCGTCGTGCGTCGTTCATCGTTCGTGAGGGGAGGGATTTTGAAGAATGAAAGGGGAGTGTGCGTGAAGAAGGAAAGGGAGGGATTTTGA

mRNA sequence

ATGGGAACACAAGAAACAGAGCAGAAAGTTAAATACCTAGGGGAAGAGATAAACGGAGGAAAAAGAAACGAAAAAAGAAAGATCAAGAACTCATCAGCGATGATATGGGTCTCCTCGTCGTGGGTCTTTAAGAATGGGATTAAGGTTGGGATTTTCGTCGTGCGTCGTTCATCGTTCGTGAGGGGAGGGATTTTGAAGAATGAAAGGGGAGTGTGCGTGAAGAAGGAAAGGGAGGGATTTTGA

Coding sequence (CDS)

ATGGGAACACAAGAAACAGAGCAGAAAGTTAAATACCTAGGGGAAGAGATAAACGGAGGAAAAAGAAACGAAAAAAGAAAGATCAAGAACTCATCAGCGATGATATGGGTCTCCTCGTCGTGGGTCTTTAAGAATGGGATTAAGGTTGGGATTTTCGTCGTGCGTCGTTCATCGTTCGTGAGGGGAGGGATTTTGAAGAATGAAAGGGGAGTGTGCGTGAAGAAGGAAAGGGAGGGATTTTGA

Protein sequence

MGTQETEQKVKYLGEEINGGKRNEKRKIKNSSAMIWVSSSWVFKNGIKVGIFVVRRSSFVRGGILKNERGVCVKKEREGF

Homology

[Close]

BLAST of IVF0012501 vs. ExPASy TrEMBL
Match: A0A5D3DDC9 (Thioredoxin H1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold101G00230 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.7e-10
Identity = 40/59 (67.80%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1  MGTQETEQKVKYLGEEINGGKRNEKRKIKNSSAMIWVSSSWVF----------KNGIKV 50
          MGTQETEQKVKY GEEIN G+RNEKRKIKNS A IWVSS WV           KNG+K+
Sbjct: 1  MGTQETEQKVKYPGEEINEGRRNEKRKIKNSLATIWVSSLWVSVSKKKRCGDEKNGVKL 59

[Close]

BLAST of IVF0012501 vs. ExPASy TrEMBL
Match: A0A5A7TTV0 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004670 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-07
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 44 KNGIKVGIFVVRRSSFVRGGILKNERGVCVKKEREGF 81
          KNG+KVG+FV+ RSSFVRGG+LK +RGV VKKEREGF
Sbjct: 55 KNGVKVGVFVMHRSSFVRGGVLKKDRGVWVKKEREGF 91

[Close]

BLAST of IVF0012501 vs. ExPASy TrEMBL
Match: A0A5A7U4Z1 (CMP-sialic acid transporter 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001190 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.5e-07
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 1  MGTQETEQKVKYLGEEINGGKRNEKRKIKNSSAMIWVSSSWVF----------KNGIKVG 59
          +G +   Q+ + +GE INGG+RNEKRKIKNS   IWVSS WV           KNG+KV 
Sbjct: 8  LGRERKRQRKQEIGEVINGGRRNEKRKIKNSPVTIWVSSPWVSVAEKKGRGDEKNGVKVR 67

[Close]

BLAST of IVF0012501 vs. ExPASy TrEMBL
Match: A0A5A7UFR0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold318G00960 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.5e-06
Identity = 30/51 (58.82%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 34 MIWVSSSWVF----------KNGIKVGIFVVRRSSFVRGGILKNERGVCVK 75
          M+WVSS WV           KNG KVG+FV+RRSSFVR GILK E GVC++
Sbjct: 1  MLWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGVCIQ 51

[Close]

BLAST of IVF0012501 vs. ExPASy TrEMBL
Match: A0A5A7T2E4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001440 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 33 AMIWVSSSWVF----------KNGIKVGIFVVRRSSFVRGGILKNERGV 72
          A IWVSS WV           KNG+KVG+F++RRS FVRGGILK ERGV
Sbjct: 2  ATIWVSSPWVSSTEKKGRGDEKNGVKVGVFIMRRSLFVRGGILKKERGV 50

[Close]

BLAST of IVF0012501 vs. NCBI nr
Match: TYK21269.1 (thioredoxin H1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 2.62e-14
Identity = 40/59 (67.80%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1  MGTQETEQKVKYLGEEINGGKRNEKRKIKNSSAMIWVSSSWVF----------KNGIKV 49
          MGTQETEQKVKY GEEIN G+RNEKRKIKNS A IWVSS WV           KNG+K+
Sbjct: 1  MGTQETEQKVKYPGEEINEGRRNEKRKIKNSLATIWVSSLWVSVSKKKRCGDEKNGVKL 59

[Close]

BLAST of IVF0012501 vs. NCBI nr
Match: KAA0044825.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK16639.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 7.30e-12
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 44 KNGIKVGIFVVRRSSFVRGGILKNERGVCVKKEREGF 80
          KNG+KVG+FV+ RSSFVRGG+LK +RGV VKKEREGF
Sbjct: 55 KNGVKVGVFVMHRSSFVRGGVLKKDRGVWVKKEREGF 91

[Close]

BLAST of IVF0012501 vs. NCBI nr
Match: KAA0048509.1 (CMP-sialic acid transporter 4 isoform X2 [Cucumis melo var. makuwa] >TYK28300.1 CMP-sialic acid transporter 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.05e-10
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 1  MGTQETEQKVKYLGEEINGGKRNEKRKIKNSSAMIWVSSSWVF----------KNGIKVG 58
          +G +   Q+ + +GE INGG+RNEKRKIKNS   IWVSS WV           KNG+KV 
Sbjct: 8  LGRERKRQRKQEIGEVINGGRRNEKRKIKNSPVTIWVSSPWVSVAEKKGRGDEKNGVKVR 67

[Close]

BLAST of IVF0012501 vs. NCBI nr
Match: KAA0054034.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.28e-08
Identity = 30/51 (58.82%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 34 MIWVSSSWVF----------KNGIKVGIFVVRRSSFVRGGILKNERGVCVK 74
          M+WVSS WV           KNG KVG+FV+RRSSFVR GILK E GVC++
Sbjct: 1  MLWVSSPWVSVIKKKGRGDEKNGAKVGVFVMRRSSFVREGILKKETGVCIQ 51

[Close]

BLAST of IVF0012501 vs. NCBI nr
Match: KAA0037133.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK13943.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 7.65e-08
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 33 AMIWVSSSWVF----------KNGIKVGIFVVRRSSFVRGGILKNERGV 71
          A IWVSS WV           KNG+KVG+F++RRS FVRGGILK ERGV
Sbjct: 2  ATIWVSSPWVSSTEKKGRGDEKNGVKVGVFIMRRSLFVRGGILKKERGV 50

The following BLAST results are available for this feature:

BLAST of IVF0012501 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012501 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DDC9	5.7e-10	67.80	Thioredoxin H1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7TTV0	1.5e-07	78.38	Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7U4Z1	4.5e-07	51.47	CMP-sialic acid transporter 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UFR0	6.5e-06	58.82	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7T2E4	1.1e-05	61.22	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0012501 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21269.1	2.62e-14	67.80	thioredoxin H1-like isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0044825.1	7.30e-12	78.38	transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK16639.1 transcri...	[more]
KAA0048509.1	1.05e-10	51.47	CMP-sialic acid transporter 4 isoform X2 [Cucumis melo var. makuwa] >TYK28300.1 ...	[more]
KAA0054034.1	1.28e-08	58.82	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0037133.1	7.65e-08	61.22	retrotransposon protein [Cucumis melo var. makuwa] >TYK13943.1 retrotransposon p...	[more]

BLAST of IVF0012501 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012501.1	IVF0012501.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity