IVF0012498 (gene) Melon (IVF77) v1

Overview


Name	IVF0012498
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr11: 10676978 .. 10677229 (+)
RNA-Seq Expression	IVF0012498
Synteny	IVF0012498

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAAAAGGACGTCGGCACAAAGAACGTCGGGAATACCCTTATTTTCGATGTCCGACAGACGTGTCGTGAAAGCTGCGTCGGAGAAAATCCTATTCCCGATGCCATGCACAATGCATCGGGAGTGGCATCGAGATAAAGCGTATTCCCGACGCCTCAAGCATGATCGACCAAACGGCGTCGAGAATAAGGCCAAATTAAATTTAAAGTACACCTTATTCTCAATGCCATGCACGGTGCGTCGGGAATAA

mRNA sequence

ATGCCAAAAAGGACGTCGGCACAAAGAACGTCGGGAATACCCTTATTTTCGATGTCCGACAGACGTGTCGTGAAAGCTGCGTCGGAGAAAATCCTATTCCCGATGCCATGCACAATGCATCGGGAGTGGCATCGAGATAAAGCGTATTCCCGACGCCTCAAGCATGATCGACCAAACGGCGTCGAGAATAAGGCCAAATTAAATTTAAAGTACACCTTATTCTCAATGCCATGCACGGTGCGTCGGGAATAA

Coding sequence (CDS)

ATGCCAAAAAGGACGTCGGCACAAAGAACGTCGGGAATACCCTTATTTTCGATGTCCGACAGACGTGTCGTGAAAGCTGCGTCGGAGAAAATCCTATTCCCGATGCCATGCACAATGCATCGGGAGTGGCATCGAGATAAAGCGTATTCCCGACGCCTCAAGCATGATCGACCAAACGGCGTCGAGAATAAGGCCAAATTAAATTTAAAGTACACCTTATTCTCAATGCCATGCACGGTGCGTCGGGAATAA

Protein sequence

MPKRTSAQRTSGIPLFSMSDRRVVKAASEKILFPMPCTMHREWHRDKAYSRRLKHDRPNGVENKAKLNLKYTLFSMPCTVRRE

Homology

[Close]

BLAST of IVF0012498 vs. ExPASy TrEMBL
Match: A0A5A7TQG9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001210 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.7e-05
Identity = 34/78 (43.59%), Postives = 39/78 (50.00%), Query Frame = 0


Query: 6  SAQRTSGIPLFSMSDRRVVKAASEKILFPMPCTMHREWHRDKAYSRRLKHDRPNGVENKA 65
          S QRTSG+ +F  S                  TM REWHR K YSRR+K          A
Sbjct: 2  STQRTSGMRVFLTSR-----------------TMRREWHRKKGYSRRVKRPSAKWRREWA 61

Query: 66 KLNLKYTLFSMPCTVRRE 84
          +LNLKYTLF  PCT + E
Sbjct: 62 QLNLKYTLFPTPCTGKGE 62

[Close]

BLAST of IVF0012498 vs. NCBI nr
Match: KAA0045128.1 (uncharacterized protein E6C27_scaffold30G001270 [Cucumis melo var. makuwa] >TYK23609.1 uncharacterized protein E5676_scaffold500G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 1.13e-06
Identity = 34/78 (43.59%), Postives = 39/78 (50.00%), Query Frame = 0


Query: 6  SAQRTSGIPLFSMSDRRVVKAASEKILFPMPCTMHREWHRDKAYSRRLKHDRPNGVENKA 65
          S QRTSG+ +F  S                  TM REWHR K YSRR+K          A
Sbjct: 2  STQRTSGMRVFLTSR-----------------TMRREWHRKKGYSRRVKRPSAKWRREWA 61

Query: 66 KLNLKYTLFSMPCTVRRE 83
          +LNLKYTLF  PCT + E
Sbjct: 62 QLNLKYTLFPTPCTGKGE 62

The following BLAST results are available for this feature:

BLAST of IVF0012498 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012498 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQG9	5.7e-05	43.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0012498 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045128.1	1.13e-06	43.59	uncharacterized protein E6C27_scaffold30G001270 [Cucumis melo var. makuwa] >TYK2...	[more]

BLAST of IVF0012498 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012498.1	IVF0012498.1	mRNA