IVF0012457 (gene) Melon (IVF77) v1

Overview
NameIVF0012457
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr11: 5719184 .. 5719633 (-)
RNA-Seq ExpressionIVF0012457
SyntenyIVF0012457
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACATCCACTATATGTACAATGTCCCTATTGTACCTGCTCTAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCTGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACTGACACTGACACAAAGCGATCATAGTTACGTTAGTCCAGTAATGATGATTCCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGTATATTACAATTCAGAGGCAGGTCGATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGTGATCCATCGTCTTCATACATGAATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACTCGAGCAATCAGATGAGCAACAGCAACAAAAGAATCAAGAGGAAATATAA

mRNA sequence

ATGGAGAACATCCACTATATGTACAATGTCCCTATTGTACCTGCTCTAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCTGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACTGACACTGACACAAAGCGATCATAGTTACGTTAGTCCAGTAATGATGATTCCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGTATATTACAATTCAGAGGCAGGTCGATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGTGATCCATCGTCTTCATACATGAATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACTCGAGCAATCAGATGAGCAACAGCAACAAAAGAATCAAGAGGAAATATAA

Coding sequence (CDS)

ATGGAGAACATCCACTATATGTACAATGTCCCTATTGTACCTGCTCTAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCTGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACTGACACTGACACAAAGCGATCATAGTTACGTTAGTCCAGTAATGATGATTCCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGTATATTACAATTCAGAGGCAGGTCGATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGTGATCCATCGTCTTCATACATGAATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACTCGAGCAATCAGATGAGCAACAGCAACAAAAGAATCAAGAGGAAATATAA

Protein sequence

MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYVSPVMMIPTFGTTYYDSGVGQSSDFGRVYYNSEAGRSSTDFGQQYYDLGSDPSSSYMNGHGRGRGEHNEYLYYEVPAAVLEQSDEQQQQKNQEEI
Homology
[Close]
BLAST of IVF0012457 vs. ExPASy TrEMBL
Match: A0A5D3CIZ8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00630 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.3e-76
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYVSPVMM 60
           MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYVSPVMM
Sbjct: 643 MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYVSPVMM 702

Query: 61  IPTFGTTYYDSGVGQSSDFGRVYYNSEAGRSSTDFGQQYYDLGSDPSSSYMNGHGRGRGE 120
           IPTFGTTYYDSGVGQSSDFGRVYYNSEAGRSSTDFGQQYYDLGSDPSSSYMNGHGRGRGE
Sbjct: 703 IPTFGTTYYDSGVGQSSDFGRVYYNSEAGRSSTDFGQQYYDLGSDPSSSYMNGHGRGRGE 762

Query: 121 HNEYLYYEVPAAVLEQSDEQQQQKNQEEI 150
           HNEYLYYEVPAAVLEQSDEQQQQKNQEEI
Sbjct: 763 HNEYLYYEVPAAVLEQSDEQQQQKNQEEI 791

[Close]
BLAST of IVF0012457 vs. ExPASy TrEMBL
Match: A0A5A7U115 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold199G00010 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 3.9e-73
Identity = 143/149 (95.97%), Postives = 147/149 (98.66%), Query Frame = 0 

Query: 1   MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYVSPVMM 60
           MENIHYMY+VPIVPALVQRRRPLVQEPDQLEE DQHVEEVPPVTLTLTQ+DHSYVSPVMM
Sbjct: 736 MENIHYMYDVPIVPALVQRRRPLVQEPDQLEENDQHVEEVPPVTLTLTQTDHSYVSPVMM 795

Query: 61  IPTFGTTYYDSGVGQSSDFGRVYYNSEAGRSSTDFGQQYYDLGSDPSSSYMNGHGRGRGE 120
           +PTFGTTYYDSGVGQSSDFGR YYNSEAGRSSTDFGQQYYDLGSDPSSSYM+GHGRGRGE
Sbjct: 796 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGRSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 855

Query: 121 HNEYLYYEVPAAVLEQSDEQQQQKNQEEI 150
           HNEYLYYEVPAAVLEQSDEQQQQKNQEEI
Sbjct: 856 HNEYLYYEVPAAVLEQSDEQQQQKNQEEI 884

[Close]
BLAST of IVF0012457 vs. ExPASy TrEMBL
Match: A0A5A7U5S8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00410 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.3e-65
Identity = 129/145 (88.97%), Postives = 138/145 (95.17%), Query Frame = 0 

Query: 1   MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYVSPVMM 60
           MENIHYMY+VPIVPA VQRRRPLVQEPDQLEEVDQH EEVPP+T T TQS+H+YVSPVMM
Sbjct: 141 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 200

Query: 61  IPTFGTTYYDSGVGQSSDFGRVYYNSEAGRSSTDFGQQYYDLGSDPSSSYMNGHGRGRGE 120
           +PTFGTTYYDSGVGQSSDFGR YYNSEAG+SSTDFGQQYYDLGSDPSSSYM+ HGRGRGE
Sbjct: 201 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 260

Query: 121 HNEYLYYEVPAAVLEQSDEQQQQKN 146
           HNEYLYYEVPAAV +QSDEQQQQ+N
Sbjct: 261 HNEYLYYEVPAAVPKQSDEQQQQEN 285

[Close]
BLAST of IVF0012457 vs. ExPASy TrEMBL
Match: A0A5D3D5R5 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001010 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.3e-65
Identity = 135/164 (82.32%), Postives = 143/164 (87.20%), Query Frame = 0 

Query: 1   MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYVSPVMM 60
           MENIHYMY+VPIVPA VQRRRPLVQEPDQLEEVDQH EEVPP+T T TQS+H+YVSPVMM
Sbjct: 141 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 200

Query: 61  IPTFGTTYYDSGVGQSSDFGRVYYNSEAGRSSTDFGQQYYDLGSDPSSSYMNGHGRGRGE 120
           +PTFGTTYYDSGVGQSSDFGR YYNSEAG+SSTDFGQQYYDLGSDPSSSYM+GHGRGRGE
Sbjct: 201 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 260

Query: 121 HNEYLYYEVPAAVLE---------------QSDEQQQQKNQEEI 150
           HNEYLYYEVPAAV E               QSDEQQQQ+NQEEI
Sbjct: 261 HNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEI 304

[Close]
BLAST of IVF0012457 vs. ExPASy TrEMBL
Match: A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.5e-64
Identity = 128/145 (88.28%), Postives = 137/145 (94.48%), Query Frame = 0 

Query: 1   MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYVSPVMM 60
           MENIHYMY+VPIVPA VQRRRPLVQE DQLEEVDQH EEVPP+T T TQS+H+YVSPVMM
Sbjct: 820 MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 879

Query: 61  IPTFGTTYYDSGVGQSSDFGRVYYNSEAGRSSTDFGQQYYDLGSDPSSSYMNGHGRGRGE 120
           +PTFG TYYDSGVGQSSDFGR YYNSEAG+SSTDFGQQYYDLGSDPSSSYM+GHGRGRGE
Sbjct: 880 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 939

Query: 121 HNEYLYYEVPAAVLEQSDEQQQQKN 146
           HNEYLYY+VPAAV EQSDEQQQQ+N
Sbjct: 940 HNEYLYYKVPAAVPEQSDEQQQQEN 964

[Close]
BLAST of IVF0012457 vs. NCBI nr
Match: TYK11154.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 296 bits (758), Expect = 3.57e-93
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYVSPVMM 60
           MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYVSPVMM
Sbjct: 643 MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYVSPVMM 702

Query: 61  IPTFGTTYYDSGVGQSSDFGRVYYNSEAGRSSTDFGQQYYDLGSDPSSSYMNGHGRGRGE 120
           IPTFGTTYYDSGVGQSSDFGRVYYNSEAGRSSTDFGQQYYDLGSDPSSSYMNGHGRGRGE
Sbjct: 703 IPTFGTTYYDSGVGQSSDFGRVYYNSEAGRSSTDFGQQYYDLGSDPSSSYMNGHGRGRGE 762

Query: 121 HNEYLYYEVPAAVLEQSDEQQQQKNQEEI 149
           HNEYLYYEVPAAVLEQSDEQQQQKNQEEI
Sbjct: 763 HNEYLYYEVPAAVLEQSDEQQQQKNQEEI 791

[Close]
BLAST of IVF0012457 vs. NCBI nr
Match: KAA0047926.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 285 bits (728), Expect = 4.91e-88
Identity = 143/149 (95.97%), Postives = 147/149 (98.66%), Query Frame = 0 

Query: 1   MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYVSPVMM 60
           MENIHYMY+VPIVPALVQRRRPLVQEPDQLEE DQHVEEVPPVTLTLTQ+DHSYVSPVMM
Sbjct: 736 MENIHYMYDVPIVPALVQRRRPLVQEPDQLEENDQHVEEVPPVTLTLTQTDHSYVSPVMM 795

Query: 61  IPTFGTTYYDSGVGQSSDFGRVYYNSEAGRSSTDFGQQYYDLGSDPSSSYMNGHGRGRGE 120
           +PTFGTTYYDSGVGQSSDFGR YYNSEAGRSSTDFGQQYYDLGSDPSSSYM+GHGRGRGE
Sbjct: 796 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGRSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 855

Query: 121 HNEYLYYEVPAAVLEQSDEQQQQKNQEEI 149
           HNEYLYYEVPAAVLEQSDEQQQQKNQEEI
Sbjct: 856 HNEYLYYEVPAAVLEQSDEQQQQKNQEEI 884

[Close]
BLAST of IVF0012457 vs. NCBI nr
Match: XP_016900498.1 (PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo])

HSP 1 Score: 256 bits (655), Expect = 4.96e-84
Identity = 128/145 (88.28%), Postives = 137/145 (94.48%), Query Frame = 0 

Query: 1   MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYVSPVMM 60
           MENIHYMY+VPIVPA VQRRRPLVQE DQLEEVDQH EEVPP+T T TQS+H+YVSPVMM
Sbjct: 57  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 116

Query: 61  IPTFGTTYYDSGVGQSSDFGRVYYNSEAGRSSTDFGQQYYDLGSDPSSSYMNGHGRGRGE 120
           +PTFG TYYDSGVGQSSDFGR YYNSEAG+SSTDFGQQYYDLGSDPSSSYM+GHGRGRGE
Sbjct: 117 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 176

Query: 121 HNEYLYYEVPAAVLEQSDEQQQQKN 145
           HNEYLYY+VPAAV EQSDEQQQQ+N
Sbjct: 177 HNEYLYYKVPAAVPEQSDEQQQQEN 201

[Close]
BLAST of IVF0012457 vs. NCBI nr
Match: KAA0051233.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 259 bits (662), Expect = 6.35e-84
Identity = 129/145 (88.97%), Postives = 138/145 (95.17%), Query Frame = 0 

Query: 1   MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYVSPVMM 60
           MENIHYMY+VPIVPA VQRRRPLVQEPDQLEEVDQH EEVPP+T T TQS+H+YVSPVMM
Sbjct: 141 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 200

Query: 61  IPTFGTTYYDSGVGQSSDFGRVYYNSEAGRSSTDFGQQYYDLGSDPSSSYMNGHGRGRGE 120
           +PTFGTTYYDSGVGQSSDFGR YYNSEAG+SSTDFGQQYYDLGSDPSSSYM+ HGRGRGE
Sbjct: 201 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 260

Query: 121 HNEYLYYEVPAAVLEQSDEQQQQKN 145
           HNEYLYYEVPAAV +QSDEQQQQ+N
Sbjct: 261 HNEYLYYEVPAAVPKQSDEQQQQEN 285

[Close]
BLAST of IVF0012457 vs. NCBI nr
Match: TYK18891.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 259 bits (661), Expect = 9.00e-84
Identity = 129/145 (88.97%), Postives = 138/145 (95.17%), Query Frame = 0 

Query: 1   MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYVSPVMM 60
           MENIHYMY+VPIVPA VQRRRPLVQEPDQLEEVDQH EEVPP+T T TQS+H+YVSPVMM
Sbjct: 141 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 200

Query: 61  IPTFGTTYYDSGVGQSSDFGRVYYNSEAGRSSTDFGQQYYDLGSDPSSSYMNGHGRGRGE 120
           +PTFGTTYYDSGVGQSSDFGR YYNSEAG+SSTDFGQQYYDLGSDPSSSYM+GHGRGRGE
Sbjct: 201 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 260

Query: 121 HNEYLYYEVPAAVLEQSDEQQQQKN 145
           HNEYLYYEVPAAV EQS+E QQQ+N
Sbjct: 261 HNEYLYYEVPAAVPEQSNELQQQEN 285

The following BLAST results are available for this feature:
BLAST of IVF0012457 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0012457 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CIZ81.3e-76100.00Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7U1153.9e-7395.97Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7U5S82.3e-6588.97Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3D5R52.3e-6582.32Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3DUI11.5e-6488.28Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
BLAST of IVF0012457 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK11154.13.57e-93100.00mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0047926.14.91e-8895.97mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
XP_016900498.14.96e-8488.28PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumi... [more]
KAA0051233.16.35e-8488.97mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK18891.19.00e-8488.97mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
BLAST of IVF0012457 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0012457.1IVF0012457.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance
molecular_function GO:0008270 zinc ion binding