IVF0012448 (gene) Melon (IVF77) v1

Overview


Name	IVF0012448
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr10: 25449639 .. 25449978 (-)
RNA-Seq Expression	IVF0012448
Synteny	IVF0012448

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCAAAAAGAAGGAACTGCTGTTTCATGCAAAGGACTGCCTAAACTATTTACATTCCTATTCATTTTCTTTCTCGTAATCACTGTTCCAGGTACCAAATCAAGTATTTGTTTCTTTGATATATTTGATTTACGTACCCAATTGATTAATTATGTGTATGTATATAGGTTCTTCGGCTGCAACAAAGTTTCTAAAACAGAGATGTAGAAGGGTGGAGAACTGGGTTGCTGGAAACAAATTAAGCAGGAAGGGAAGAATCAATGACGGATCCAATGACCGATCGATGCACGGAGATTACGAGGATACCACAAATATGTCACCTATACACCATAATTGA

mRNA sequence

ATGGCTCAAAAAGAAGGAACTGCTGTTTCATGCAAAGGACTGCCTAAACTATTTACATTCCTATTCATTTTCTTTCTCGTAATCACTGTTCCAGGTTCTTCGGCTGCAACAAAGTTTCTAAAACAGAGATGTAGAAGGGTGGAGAACTGGGTTGCTGGAAACAAATTAAGCAGGAAGGGAAGAATCAATGACGGATCCAATGACCGATCGATGCACGGAGATTACGAGGATACCACAAATATGTCACCTATACACCATAATTGA

Coding sequence (CDS)

ATGGCTCAAAAAGAAGGAACTGCTGTTTCATGCAAAGGACTGCCTAAACTATTTACATTCCTATTCATTTTCTTTCTCGTAATCACTGTTCCAGGTTCTTCGGCTGCAACAAAGTTTCTAAAACAGAGATGTAGAAGGGTGGAGAACTGGGTTGCTGGAAACAAATTAAGCAGGAAGGGAAGAATCAATGACGGATCCAATGACCGATCGATGCACGGAGATTACGAGGATACCACAAATATGTCACCTATACACCATAATTGA

Protein sequence

MAQKEGTAVSCKGLPKLFTFLFIFFLVITVPGSSAATKFLKQRCRRVENWVAGNKLSRKGRINDGSNDRSMHGDYEDTTNMSPIHHN

Homology

[Close]

BLAST of IVF0012448 vs. ExPASy TrEMBL
Match: A0A5D3CUF1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001390 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.1e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MAQKEGTAVSCKGLPKLFTFLFIFFLVITVPGSSAATKFLKQRCRRVENWVAGNKLSRKG 60
          MAQKEGTAVSCKGLPKLFTFLFIFFLVITVPGSSAATKFLKQRCRRVENWVAGNKLSRKG
Sbjct: 1  MAQKEGTAVSCKGLPKLFTFLFIFFLVITVPGSSAATKFLKQRCRRVENWVAGNKLSRKG 60

Query: 61 RINDGSNDRSMHGDYEDTTNMSPIHHN 88
          RINDGSNDRSMHGDYEDTTNMSPIHHN
Sbjct: 61 RINDGSNDRSMHGDYEDTTNMSPIHHN 87

[Close]

BLAST of IVF0012448 vs. ExPASy TrEMBL
Match: A0A0A0KP61 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G526880 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.6e-21
Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 1  MAQKEGTAVSCKGLPKLFTFLFIFFLVITVPGSSAATKFLKQRCRRVENWVAGNKLSRKG 60
          MAQ+  +  S  GL +LF FLFIFFL++TVPG   ATKF++Q+CRRVENWV+ NK +RKG
Sbjct: 1  MAQRVASCRSSSGLLQLFAFLFIFFLLLTVPGCWGATKFVRQKCRRVENWVSANK-NRKG 60

Query: 61 RINDGSNDRSMHGDYEDTTNMSPIHHN 88
          RI  G    SMHGDYEDT NMSPIHHN
Sbjct: 61 RITHG----SMHGDYEDTINMSPIHHN 82

[Close]

BLAST of IVF0012448 vs. NCBI nr
Match: TYK15082.1 (hypothetical protein E5676_scaffold45G001390 [Cucumis melo var. makuwa])

HSP 1 Score: 180 bits (457), Expect = 3.38e-57
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MAQKEGTAVSCKGLPKLFTFLFIFFLVITVPGSSAATKFLKQRCRRVENWVAGNKLSRKG 60
          MAQKEGTAVSCKGLPKLFTFLFIFFLVITVPGSSAATKFLKQRCRRVENWVAGNKLSRKG
Sbjct: 1  MAQKEGTAVSCKGLPKLFTFLFIFFLVITVPGSSAATKFLKQRCRRVENWVAGNKLSRKG 60

Query: 61 RINDGSNDRSMHGDYEDTTNMSPIHHN 87
          RINDGSNDRSMHGDYEDTTNMSPIHHN
Sbjct: 61 RINDGSNDRSMHGDYEDTTNMSPIHHN 87

[Close]

BLAST of IVF0012448 vs. NCBI nr
Match: KGN51398.1 (hypothetical protein Csa_008539 [Cucumis sativus])

HSP 1 Score: 112 bits (280), Expect = 2.93e-30
Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 1  MAQKEGTAVSCKGLPKLFTFLFIFFLVITVPGSSAATKFLKQRCRRVENWVAGNKLSRKG 60
          MAQ+  +  S  GL +LF FLFIFFL++TVPG   ATKF++Q+CRRVENWV+ NK +RKG
Sbjct: 1  MAQRVASCRSSSGLLQLFAFLFIFFLLLTVPGCWGATKFVRQKCRRVENWVSANK-NRKG 60

Query: 61 RINDGSNDRSMHGDYEDTTNMSPIHHN 87
          RI  GS    MHGDYEDT NMSPIHHN
Sbjct: 61 RITHGS----MHGDYEDTINMSPIHHN 82

The following BLAST results are available for this feature:

BLAST of IVF0012448 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012448 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CUF1	6.1e-42	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KP61	1.6e-21	65.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G526880 PE=4 SV=1	[more]

BLAST of IVF0012448 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK15082.1	3.38e-57	100.00	hypothetical protein E5676_scaffold45G001390 [Cucumis melo var. makuwa]	[more]
KGN51398.1	2.93e-30	65.52	hypothetical protein Csa_008539 [Cucumis sativus]	[more]

BLAST of IVF0012448 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012448.2	IVF0012448.2	mRNA