IVF0012435 (gene) Melon (IVF77) v1

Overview


Name	IVF0012435
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	UBN2_3 domain-containing protein
Location	chr09: 6417411 .. 6417776 (+)
RNA-Seq Expression	IVF0012435
Synteny	IVF0012435

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACACTTGAAAACTCAACGTCCGGCAACTCTAACACCTTAGCGTCGATTACCTCCTCTGATATTGATGCCTTATTAAACCCTTTCATGTTACACCATTCCATTATTCCGACTACCAACCTTGTTTCTACACCACAGATAGGATCAAATAATTACTCATCATGGAGTAGAGCGATGATGCTTGCGTTATCTGGAAAGAACAAAGTTGGATTCATCACCGGCACAATTAAGAAACCTTCAGAAGGTAATTATCTCCTCTCAGCTTGGAAATGCAATAACGATGCAATAGCATCTTGGATTATCAACTCCATTTCGAAAGAAATAGCGGCAAGCCTTGTTTACAATGGAAGCGTTATGAGATGA

mRNA sequence

ATGACGACACTTGAAAACTCAACGTCCGGCAACTCTAACACCTTAGCGTCGATTACCTCCTCTGATATTGATGCCTTATTAAACCCTTTCATGTTACACCATTCCATTATTCCGACTACCAACCTTGTTTCTACACCACAGATAGGATCAAATAATTACTCATCATGGAGTAGAGCGATGATGCTTGCGTTATCTGGAAAGAACAAAGTTGGATTCATCACCGGCACAATTAAGAAACCTTCAGAAGGTAATTATCTCCTCTCAGCTTGGAAATGCAATAACGATGCAATAGCATCTTGGATTATCAACTCCATTTCGAAAGAAATAGCGGCAAGCCTTGTTTACAATGGAAGCGTTATGAGATGA

Coding sequence (CDS)

ATGACGACACTTGAAAACTCAACGTCCGGCAACTCTAACACCTTAGCGTCGATTACCTCCTCTGATATTGATGCCTTATTAAACCCTTTCATGTTACACCATTCCATTATTCCGACTACCAACCTTGTTTCTACACCACAGATAGGATCAAATAATTACTCATCATGGAGTAGAGCGATGATGCTTGCGTTATCTGGAAAGAACAAAGTTGGATTCATCACCGGCACAATTAAGAAACCTTCAGAAGGTAATTATCTCCTCTCAGCTTGGAAATGCAATAACGATGCAATAGCATCTTGGATTATCAACTCCATTTCGAAAGAAATAGCGGCAAGCCTTGTTTACAATGGAAGCGTTATGAGATGA

Protein sequence

MTTLENSTSGNSNTLASITSSDIDALLNPFMLHHSIIPTTNLVSTPQIGSNNYSSWSRAMMLALSGKNKVGFITGTIKKPSEGNYLLSAWKCNNDAIASWIINSISKEIAASLVYNGSVMR

Homology

[Close]

BLAST of IVF0012435 vs. ExPASy TrEMBL
Match: A0A5D3C350 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002490 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.5e-59
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MTTLENSTSGNSNTLASITSSDIDALLNPFMLHHSIIPTTNLVSTPQIGSNNYSSWSRAM 60
           MTTLENSTSGNSNTLASITSSDIDALLNPFMLHHSIIPTTNLVSTPQIGSNNYSSWSRAM
Sbjct: 1   MTTLENSTSGNSNTLASITSSDIDALLNPFMLHHSIIPTTNLVSTPQIGSNNYSSWSRAM 60

Query: 61  MLALSGKNKVGFITGTIKKPSEGNYLLSAWKCNNDAIASWIINSISKEIAASLVYNGSVM 120
           MLALSGKNKVGFITGTIKKPSEGNYLLSAWKCNNDAIASWIINSISKEIAASLVYNGSVM
Sbjct: 61  MLALSGKNKVGFITGTIKKPSEGNYLLSAWKCNNDAIASWIINSISKEIAASLVYNGSVM 120

Query: 121 R 122
           R
Sbjct: 121 R 121

[Close]

BLAST of IVF0012435 vs. ExPASy TrEMBL
Match: A0A6J1CXR2 (uncharacterized protein LOC111015239 OS=Momordica charantia OX=3673 GN=LOC111015239 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.1e-28
Identity = 65/105 (61.90%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 14  TLASITSSDIDALLNPFMLHHSIIPTTNLVSTPQIGSNNYSSWSRAMMLALSGKNKVGFI 73
           T ++  ++ I++ LNP+++HHS  PTT LV+   +G++NY+SW R+M++ALSGKNKVGFI
Sbjct: 12  TSSTAGTTTIESQLNPYLIHHSTAPTTMLVTQQLLGASNYNSWCRSMLIALSGKNKVGFI 71

Query: 74  TGTIKKPSEGNYLLSAWKCNNDAIASWIINSISKEIAASLVYNGS 119
            GTIKKP+ GN LL+AWKCNND I SWIINS+SKEIAAS++Y GS
Sbjct: 72  DGTIKKPN-GN-LLAAWKCNNDIITSWIINSVSKEIAASIIYTGS 114

[Close]

BLAST of IVF0012435 vs. ExPASy TrEMBL
Match: A0A5A7VE66 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00250 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 4.1e-28
Identity = 66/118 (55.93%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 4   LENSTSGNSNTLASIT--SSDIDALLNPFMLHHSIIPTTNLVSTPQIGSNNYSSWSRAMM 63
           +EN +S N +    +T  +S  DA LNP+ +HHS+ PT  +V+ P  G+ NY+SWSRAM+
Sbjct: 1   MENQSSTNGSRFDPLTAANSQNDAQLNPYFIHHSLGPTAAIVTQPLTGAINYTSWSRAML 60

Query: 64  LALSGKNKVGFITGTIKKPSEGNYLLSAWKCNNDAIASWIINSISKEIAASLVYNGSV 120
           +A+SG+NK GFITG I+KPS+G  LL AW CNND +ASWI+NS+SKEIAAS++Y GS+
Sbjct: 61  MAISGRNKAGFITGKIQKPSDG-VLLDAWICNNDILASWILNSVSKEIAASIIYIGSI 117

[Close]

BLAST of IVF0012435 vs. ExPASy TrEMBL
Match: A0A5A7UHM5 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00450 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.9e-27
Identity = 69/88 (78.41%), Postives = 73/88 (82.95%), Query Frame = 0


Query: 1  MTTLENSTSGNSNTLASITSSDIDALLNPFMLHHSIIPTTNLVSTPQIGSNNYSSWSRAM 60
          M T ENSTS +SNT A ITS  +DA LNPFMLHHSII TTNL+STP  GSNNYSSWSRAM
Sbjct: 1  MMTPENSTSDSSNTSAPITSYALDAQLNPFMLHHSIISTTNLISTPTTGSNNYSSWSRAM 60

Query: 61 MLALSGKNKVGFITGTIKKPSEGNYLLS 89
          MLAL GKNKVGFITG IKKP EGN LL+
Sbjct: 61 MLALFGKNKVGFITGAIKKPLEGNLLLA 88

[Close]

BLAST of IVF0012435 vs. ExPASy TrEMBL
Match: A0A6J1CN69 (uncharacterized protein LOC111012810 OS=Momordica charantia OX=3673 GN=LOC111012810 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.8e-26
Identity = 67/116 (57.76%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 3   TLENSTSGNSNTLASITSSDIDALLNPFMLHHSIIPTTNLVSTPQIGSNNYSSWSRAMML 62
           T + S + NS   A   ++ I++ LNP+++HHS  PTT LV+   +G++NY+SWSR+M++
Sbjct: 15  TQQTSVAQNS---AVENTTAIESQLNPYLIHHSTAPTTILVTQQLLGASNYNSWSRSMII 74

Query: 63  ALSGKNKVGFITGTIKKPSEGNYLLSAWKCNNDAIASWIINSISKEIAASLVYNGS 119
           ALSGKNKVGF+ GTI+KP +GN LL+AWKC ND I SWI+NS+SKEIAAS VY GS
Sbjct: 75  ALSGKNKVGFVDGTIQKP-KGN-LLAAWKCINDIITSWILNSVSKEIAASFVYTGS 125

[Close]

BLAST of IVF0012435 vs. NCBI nr
Match: TYK05760.1 (UBN2_3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 237 bits (605), Expect = 1.07e-78
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MTTLENSTSGNSNTLASITSSDIDALLNPFMLHHSIIPTTNLVSTPQIGSNNYSSWSRAM 60
           MTTLENSTSGNSNTLASITSSDIDALLNPFMLHHSIIPTTNLVSTPQIGSNNYSSWSRAM
Sbjct: 1   MTTLENSTSGNSNTLASITSSDIDALLNPFMLHHSIIPTTNLVSTPQIGSNNYSSWSRAM 60

Query: 61  MLALSGKNKVGFITGTIKKPSEGNYLLSAWKCNNDAIASWIINSISKEIAASLVYNGSVM 120
           MLALSGKNKVGFITGTIKKPSEGNYLLSAWKCNNDAIASWIINSISKEIAASLVYNGSVM
Sbjct: 61  MLALSGKNKVGFITGTIKKPSEGNYLLSAWKCNNDAIASWIINSISKEIAASLVYNGSVM 120

[Close]

BLAST of IVF0012435 vs. NCBI nr
Match: KAA0054478.1 (UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK14560.1 UBN2_3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (327), Expect = 9.14e-37
Identity = 69/88 (78.41%), Postives = 73/88 (82.95%), Query Frame = 0


Query: 1  MTTLENSTSGNSNTLASITSSDIDALLNPFMLHHSIIPTTNLVSTPQIGSNNYSSWSRAM 60
          M T ENSTS +SNT A ITS  +DA LNPFMLHHSII TTNL+STP  GSNNYSSWSRAM
Sbjct: 1  MMTPENSTSDSSNTSAPITSYALDAQLNPFMLHHSIISTTNLISTPTTGSNNYSSWSRAM 60

Query: 61 MLALSGKNKVGFITGTIKKPSEGNYLLS 88
          MLAL GKNKVGFITG IKKP EGN LL+
Sbjct: 61 MLALFGKNKVGFITGAIKKPLEGNLLLA 88

[Close]

BLAST of IVF0012435 vs. NCBI nr
Match: XP_022142771.1 (uncharacterized protein LOC111012810 [Momordica charantia])

HSP 1 Score: 131 bits (330), Expect = 1.43e-36
Identity = 62/96 (64.58%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 23  IDALLNPFMLHHSIIPTTNLVSTPQIGSNNYSSWSRAMMLALSGKNKVGFITGTIKKPSE 82
           I++ LNP+++HHS  PTT LV+   +G++NY+SWSR+M++ALSGKNKVGF+ GTI+KP +
Sbjct: 32  IESQLNPYLIHHSTAPTTILVTQQLLGASNYNSWSRSMIIALSGKNKVGFVDGTIQKP-K 91

Query: 83  GNYLLSAWKCNNDAIASWIINSISKEIAASLVYNGS 118
           GN LL+AWKC ND I SWI+NS+SKEIAAS VY GS
Sbjct: 92  GN-LLAAWKCINDIITSWILNSVSKEIAASFVYTGS 125

[Close]

BLAST of IVF0012435 vs. NCBI nr
Match: XP_022145891.1 (uncharacterized protein LOC111015239 [Momordica charantia])

HSP 1 Score: 136 bits (343), Expect = 7.76e-36
Identity = 64/96 (66.67%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 23  IDALLNPFMLHHSIIPTTNLVSTPQIGSNNYSSWSRAMMLALSGKNKVGFITGTIKKPSE 82
           I++ LNP+++HHS  PTT LV+   +G++NY+SW R+M++ALSGKNKVGFI GTIKKP+ 
Sbjct: 21  IESQLNPYLIHHSTAPTTMLVTQQLLGASNYNSWCRSMLIALSGKNKVGFIDGTIKKPN- 80

Query: 83  GNYLLSAWKCNNDAIASWIINSISKEIAASLVYNGS 118
           GN LL+AWKCNND I SWIINS+SKEIAAS++Y GS
Sbjct: 81  GN-LLAAWKCNNDIITSWIINSVSKEIAASIIYTGS 114

[Close]

BLAST of IVF0012435 vs. NCBI nr
Match: XP_031745063.1 (uncharacterized protein LOC116405242 [Cucumis sativus])

HSP 1 Score: 126 bits (317), Expect = 3.06e-34
Identity = 66/82 (80.49%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 1  MTTLENSTSGNSNTLASITSSDIDALLNPFMLHHSIIPTTNLVSTPQIGSNNYSSWSRAM 60
          MTT E+STS +SN    ITSS++D  LNPFMLHHSI PTTNLVSTP  GSNNYSSWSRAM
Sbjct: 1  MTTPESSTSDSSNRSVPITSSNLDVQLNPFMLHHSITPTTNLVSTPLAGSNNYSSWSRAM 60

Query: 61 MLALSGKNKVGFITGTIKKPSE 82
          MLALSGKNKVGFITG IKKPSE
Sbjct: 61 MLALSGKNKVGFITGLIKKPSE 82

The following BLAST results are available for this feature:

BLAST of IVF0012435 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012435 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C350	4.5e-59	100.00	UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1CXR2	3.1e-28	61.90	uncharacterized protein LOC111015239 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A5A7VE66	4.1e-28	55.93	Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa O...	[more]
A0A5A7UHM5	5.9e-27	78.41	UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1CN69	3.8e-26	57.76	uncharacterized protein LOC111012810 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]

BLAST of IVF0012435 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05760.1	1.07e-78	100.00	UBN2_3 domain-containing protein [Cucumis melo var. makuwa]	[more]
KAA0054478.1	9.14e-37	78.41	UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK14560.1 UBN2_3 d...	[more]
XP_022142771.1	1.43e-36	64.58	uncharacterized protein LOC111012810 [Momordica charantia]	[more]
XP_022145891.1	7.76e-36	66.67	uncharacterized protein LOC111015239 [Momordica charantia]	[more]
XP_031745063.1	3.06e-34	80.49	uncharacterized protein LOC116405242 [Cucumis sativus]	[more]

BLAST of IVF0012435 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 33..81 e-value: 1.0E-16 score: 60.4
None	No IPR available	PANTHER	PTHR37610:SF55	SUBFAMILY NOT NAMED	coord: 20..116
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 20..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012435.1	IVF0012435.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016020	membrane
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding