IVF0012421 (gene) Melon (IVF77) v1

Overview


Name	IVF0012421
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr08: 17600572 .. 17600935 (-)
RNA-Seq Expression	IVF0012421
Synteny	IVF0012421

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACGACTTGGCTTGATCGGCTCGGCTTGCTTGACTCGGCTCGATTCGATCGTTTGTAGCCGACGCACACGCGACGACTGTTTTCCTCTGCTTCACTCGATGACGGCCGGAAGAGGGACGCATGACGGAAATGGAAGAATGGCTCGTAACGAACACGGTCAGAGGCGGAGGAGTCGACGACTTGCTCGGATACACGAGATGAAGAGAGAGAGAGCATCGGAGATTGCGGCTTGCGAACGGTCGGACGACCGATTTGGAGGACCCTTCGGTGGCTAGCCGTGCGCAAACGAAGAACAGAGACACGATTGCGAACGTCAGCATTGCGAGGGGGACGACGATAGAGATAGAGACGGCTGTGTGA

mRNA sequence

ATGGCACGACTTGGCTTGATCGGCTCGGCTTGCTTGACTCGGCTCGATTCGATCGTTTGTAGCCGACGCACACGCGACGACTGTTTTCCTCTGCTTCACTCGATGACGGCCGGAAGAGGGACGCATGACGGAAATGGAAGAATGGCTCGTAACGAACACGGTCAGAGGCGGAGGAAGAGAGAGCATCGGAGATTGCGGCTTGCGAACGGTCGGACGACCGATTTGGAGGACCCTTCGGTGGCTAGCCGTGCGCAAACGAAGAACAGAGACACGATTGCGAACGTCAGCATTGCGAGGGGGACGACGATAGAGATAGAGACGGCTGTGTGA

Coding sequence (CDS)

ATGGCACGACTTGGCTTGATCGGCTCGGCTTGCTTGACTCGGCTCGATTCGATCGTTTGTAGCCGACGCACACGCGACGACTGTTTTCCTCTGCTTCACTCGATGACGGCCGGAAGAGGGACGCATGACGGAAATGGAAGAATGGCTCGTAACGAACACGGTCAGAGGCGGAGGAAGAGAGAGCATCGGAGATTGCGGCTTGCGAACGGTCGGACGACCGATTTGGAGGACCCTTCGGTGGCTAGCCGTGCGCAAACGAAGAACAGAGACACGATTGCGAACGTCAGCATTGCGAGGGGGACGACGATAGAGATAGAGACGGCTGTGTGA

Protein sequence

MARLGLIGSACLTRLDSIVCSRRTRDDCFPLLHSMTAGRGTHDGNGRMARNEHGQRRRKREHRRLRLANGRTTDLEDPSVASRAQTKNRDTIANVSIARGTTIEIETAV

Homology

[Close]

BLAST of IVF0012421 vs. ExPASy TrEMBL
Match: A0A5A7SJG5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002520 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.6e-07
Identity = 43/75 (57.33%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 36  TAGR-GTHDGNGRMARNEHGQRRRKREHRRLRLANGRTTDLEDPSVASRAQTKNRDTIAN 95
           T GR  T++G GR +R        KRE RR RLAN RT DLEDPS A  A+TKNRD +A+
Sbjct: 105 TTGRTRTNNGWGRRSRRLARIHEMKRERRRWRLANSRTIDLEDPSAAGCARTKNRDAVAD 164

Query: 96  VSIARGTTIEIETAV 110
           V +AR TT E ETAV
Sbjct: 165 VDVARWTTTEKETAV 179

[Close]

BLAST of IVF0012421 vs. NCBI nr
Match: KAA0025946.1 (hypothetical protein E6C27_scaffold34G002520 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 5.34e-10
Identity = 43/75 (57.33%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 36  TAGRG-THDGNGRMARNEHGQRRRKREHRRLRLANGRTTDLEDPSVASRAQTKNRDTIAN 95
           T GR  T++G GR +R        KRE RR RLAN RT DLEDPS A  A+TKNRD +A+
Sbjct: 105 TTGRTRTNNGWGRRSRRLARIHEMKRERRRWRLANSRTIDLEDPSAAGCARTKNRDAVAD 164

Query: 96  VSIARGTTIEIETAV 109
           V +AR TT E ETAV
Sbjct: 165 VDVARWTTTEKETAV 179

The following BLAST results are available for this feature:

BLAST of IVF0012421 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012421 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SJG5	3.6e-07	57.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0012421 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025946.1	5.34e-10	57.33	hypothetical protein E6C27_scaffold34G002520 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0012421 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012421.2	IVF0012421.2	mRNA