IVF0012416 (gene) Melon (IVF77) v1

Overview
NameIVF0012416
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr03: 2438832 .. 2439014 (+)
RNA-Seq ExpressionIVF0012416
SyntenyIVF0012416
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAGAAACTGATGGTGGAAAAGCGACGGAAGAGAAAGCGACGGTGGAAAAACGGAAGAGAAAGCTACGGTGGAAAAGCGACGGTGGAAATGAGCTGGAAAGCCTTTAAAAAACGAAAGAACAAATACGCCGGAAAGCCTTTACAAAAGATGGTTTATTTTTTTGGGAGGAAAAATTAG

mRNA sequence

ATGGAAGAGAAACTGATGGTGGAAAAGCGACGGAAGAGAAAGCGACGGTGGAAAAACGGAAGAGAAAGCTACGGTGGAAAAGCGACGGTGGAAATGAGCTGGAAAGCCTTTAAAAAACGAAAGAACAAATACGCCGGAAAGCCTTTACAAAAGATGGTTTATTTTTTTGGGAGGAAAAATTAG

Coding sequence (CDS)

ATGGAAGAGAAACTGATGGTGGAAAAGCGACGGAAGAGAAAGCGACGGTGGAAAAACGGAAGAGAAAGCTACGGTGGAAAAGCGACGGTGGAAATGAGCTGGAAAGCCTTTAAAAAACGAAAGAACAAATACGCCGGAAAGCCTTTACAAAAGATGGTTTATTTTTTTGGGAGGAAAAATTAG

Protein sequence

MEEKLMVEKRRKRKRRWKNGRESYGGKATVEMSWKAFKKRKNKYAGKPLQKMVYFFGRKN
Homology
BLAST of IVF0012416 vs. ExPASy TrEMBL
Match: A0A5D3C603 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00490 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.1e-13
Identity = 45/60 (75.00%), Postives = 48/60 (80.00%), Query Frame = 0

Query: 1  MEEKLMVEKRRKRKRRWKNGRESYGGKATVEMSWKAFKKRKNKYAGKPLQKMVYFFGRKN 60
          M+EK MV  RRKRKRRWKNG+ESYGGKATVEM  KAFKKRKNK  GKPLQKM Y    K+
Sbjct: 1  MKEKPMVACRRKRKRRWKNGKESYGGKATVEMRQKAFKKRKNKCTGKPLQKMKYHVKNKD 60

BLAST of IVF0012416 vs. NCBI nr
Match: TYK07333.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 3.09e-17
Identity = 44/54 (81.48%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1  MEEKLMVEKRRKRKRRWKNGRESYGGKATVEMSWKAFKKRKNKYAGKPLQKMVY 54
          M+EK MV  RRKRKRRWKNG+ESYGGKATVEM  KAFKKRKNK  GKPLQKM Y
Sbjct: 1  MKEKPMVACRRKRKRRWKNGKESYGGKATVEMRQKAFKKRKNKCTGKPLQKMKY 54

BLAST of IVF0012416 vs. NCBI nr
Match: KAA0025432.1 (uncharacterized protein E6C27_scaffold417G00170 [Cucumis melo var. makuwa] >TYK04751.1 uncharacterized protein E5676_scaffold68G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 48.9 bits (115), Expect = 1.23e-04
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 6  MVEKRRKRKRRWKNGRESYGGKATVEMSW-KAFKKRKNKY 44
          MVEKRRKRKRRWKNGRESYGGKA  E    K  +KRK ++
Sbjct: 1  MVEKRRKRKRRWKNGRESYGGKAMEEKRMVKKRRKRKRRW 40

BLAST of IVF0012416 vs. NCBI nr
Match: KAA0063265.1 (BTB/POZ domain-containing protein [Cucumis melo var. makuwa] >TYK31509.1 BTB/POZ domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 45.4 bits (106), Expect = 8.97e-04
Identity = 23/25 (92.00%), Postives = 23/25 (92.00%), Query Frame = 0

Query: 3   EKLMVEKRRKRKRRWKNGRESYGGK 27
           EK  VEKRRKRKRRWKNGRESYGGK
Sbjct: 117 EKPTVEKRRKRKRRWKNGRESYGGK 141

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C6039.1e-1375.00Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
Match NameE-valueIdentityDescription
TYK07333.13.09e-1781.48putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
KAA0025432.11.23e-0470.00uncharacterized protein E6C27_scaffold417G00170 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0063265.18.97e-0492.00BTB/POZ domain-containing protein [Cucumis melo var. makuwa] >TYK31509.1 BTB/POZ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0012416.1IVF0012416.1mRNA