IVF0012409 (gene) Melon (IVF77) v1

Overview


Name	IVF0012409
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	LOB domain-containing protein
Location	chr01: 21151167 .. 21151935 (+)
RNA-Seq Expression	IVF0012409
Synteny	IVF0012409

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCTCTTCTTCTTCTTCCTCTTCTCCATGTGGAGCTTGCAAATTTCTTAGAAGAAAGTGTGTCAATGGTTGCATCTTTGCTCCTTATTTCCGCCACGAGCTTGGAGCCTCTCACTTCTCTGCCATCCACAAAGTTTTTGGTGCGAGCAATGCTTCCAAGCTTCTCGCTCACCTCCCGGTCTCCCACCGTTGCGAAGCGGCTGTGACGATCTCATATGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGCGTTTCTCATATTATCGCTCTCCAACAACAGGTTTTCTAATAATAAAATTTACCATAACTCATATCCGACTTAAAGTTAGATCATTCGATGATAATAGACTTTATCATAATTTTCAAAGAAAAATAAATCGATCATACTTATTCGATCTCCTCAGCTTATTCTTTTGAGGTTGTGTTCGTTTATTCAAAACCCTAATTTTCGAAAACGAGTTTGATGACTGTTTGAATGGTTGGGTAAATTGTAGGTCATGAATCTAAGGGCTCAAGTGGCTTGTTTAAGAGAACAAGCAGCACAAATTCTTCTCAACAATTATACCACAAGAAACCCTACTGAATTACCTTATGAAAAATCTCCACTTTATTATTCCGATGACCCATTCTTAGATCTTCAAAGCTGGCTTCTGGCGGAGAGCTGCACTGTCGCCGCACCGGAGTTTGAACCTGCGGCGATTCCGTACTTCGAGATGAGTGTCGTCAATTCAAAACTCGCCGGAGATTTCTGTTGCTAA

mRNA sequence

ATGGCAGCCTCTTCTTCTTCTTCCTCTTCTCCATGTGGAGCTTGCAAATTTCTTAGAAGAAAGTGTGTCAATGGTTGCATCTTTGCTCCTTATTTCCGCCACGAGCTTGGAGCCTCTCACTTCTCTGCCATCCACAAAGTTTTTGGTGCGAGCAATGCTTCCAAGCTTCTCGCTCACCTCCCGGTCTCCCACCGTTGCGAAGCGGCTGTGACGATCTCATATGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGCGTTTCTCATATTATCGCTCTCCAACAACAGGTCATGAATCTAAGGGCTCAAGTGGCTTGTTTAAGAGAACAAGCAGCACAAATTCTTCTCAACAATTATACCACAAGAAACCCTACTGAATTACCTTATGAAAAATCTCCACTTTATTATTCCGATGACCCATTCTTAGATCTTCAAAGCTGGCTTCTGGCGGAGAGCTGCACTGTCGCCGCACCGGAGTTTGAACCTGCGGCGATTCCGTACTTCGAGATGAGTGTCGTCAATTCAAAACTCGCCGGAGATTTCTGTTGCTAA

Coding sequence (CDS)

ATGGCAGCCTCTTCTTCTTCTTCCTCTTCTCCATGTGGAGCTTGCAAATTTCTTAGAAGAAAGTGTGTCAATGGTTGCATCTTTGCTCCTTATTTCCGCCACGAGCTTGGAGCCTCTCACTTCTCTGCCATCCACAAAGTTTTTGGTGCGAGCAATGCTTCCAAGCTTCTCGCTCACCTCCCGGTCTCCCACCGTTGCGAAGCGGCTGTGACGATCTCATATGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGCGTTTCTCATATTATCGCTCTCCAACAACAGGTCATGAATCTAAGGGCTCAAGTGGCTTGTTTAAGAGAACAAGCAGCACAAATTCTTCTCAACAATTATACCACAAGAAACCCTACTGAATTACCTTATGAAAAATCTCCACTTTATTATTCCGATGACCCATTCTTAGATCTTCAAAGCTGGCTTCTGGCGGAGAGCTGCACTGTCGCCGCACCGGAGTTTGAACCTGCGGCGATTCCGTACTTCGAGATGAGTGTCGTCAATTCAAAACTCGCCGGAGATTTCTGTTGCTAA

Protein sequence

MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYTTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSKLAGDFCC

Homology

[Close]

BLAST of IVF0012409 vs. ExPASy Swiss-Prot
Match: Q9M2J7 (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.4e-48
Identity = 101/151 (66.89%), Postives = 120/151 (79.47%), Query Frame = 0


Query: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           M +SSSSS SPCGACKFLRRKC  GC+FAPYF HE GASHF+AIHKVFGASNASKLL+HL
Sbjct: 1   MTSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQ--ILLN 120
           P+S RCEAA+TISYEAQARLQDPIYGCVSHI ALQQQV+NL+A++  L++QAAQ  I  +
Sbjct: 61  PISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFAD 120

Query: 121 NYTTRNP-------TELPY--EKSPLYYSDD 141
           + T+ NP       T+ PY  +   +Y+  D
Sbjct: 121 SPTSENPNSYYGDTTKAPYHHDHQNIYHHHD 151

[Close]

BLAST of IVF0012409 vs. ExPASy Swiss-Prot
Match: Q5UG13 (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 4.3e-42
Identity = 84/105 (80.00%), Postives = 94/105 (89.52%), Query Frame = 0


Query: 10  SPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAA 69
           SPCGACKFLRRKCV GC+FAPYF HE GA+HF+AIHKVFGASN SKLLAHLP++ R EAA
Sbjct: 6   SPCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPLADRPEAA 65

Query: 70  VTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQ 115
           VTISYEAQARL+DPIYGCV+HI ALQQQVM L+AQ+A L+  AAQ
Sbjct: 66  VTISYEAQARLRDPIYGCVAHIFALQQQVMTLQAQLASLKAAAAQ 110

[Close]

BLAST of IVF0012409 vs. ExPASy Swiss-Prot
Match: Q9SLB6 (LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.1e-41
Identity = 85/134 (63.43%), Postives = 103/134 (76.87%), Query Frame = 0


Query: 6   SSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S SPCGACKFLRR+CV GC+FAPYF HE GASHF+AIH+VFGASNASKLL+HLP+  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYTTRNP 125
            EAA TI YEAQAR QDPIYGCVSHI +LQQQV+NL+ Q+  L++QA Q ++        
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMM-------A 121

Query: 126 TELPYEKSPLYYSD 140
            + P  ++P YY D
Sbjct: 122 IDSPSIENPNYYQD 128

[Close]

BLAST of IVF0012409 vs. ExPASy Swiss-Prot
Match: O22131 (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 160.2 bits (404), Expect = 2.2e-38
Identity = 81/139 (58.27%), Postives = 103/139 (74.10%), Query Frame = 0


Query: 3   ASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPV 62
           +S      PCGACKFLRRKCV GCIFAPYF  E G+++F+A+HKVFGASN SKLL H+PV
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 63  SHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYTT 122
             R +A VTI YEAQAR++DPIYGCV+HI ALQQQV+NL+A+V+ L+   A + L    T
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLELPQPQT 148

Query: 123 RNPTELPYEKSPLYYSDDP 142
           R P  +P +  PL+++  P
Sbjct: 149 R-PQPMP-QPQPLFFTPPP 165

[Close]

BLAST of IVF0012409 vs. ExPASy Swiss-Prot
Match: Q9SJW5 (LOB domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=LBD14 PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.0e-36
Identity = 73/105 (69.52%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 10  SPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAA 69
           SPCG CKFLRRKCV GC+FAPYF +E G+S+F+AIHKVFGASN SKL++HLP   RC+A 
Sbjct: 6   SPCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDAV 65

Query: 70  VTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQ 115
            TISYEA +RL DPIYGCVS I +LQQQV++L+AQV  LRE+A++
Sbjct: 66  RTISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVLLREEASR 110

[Close]

BLAST of IVF0012409 vs. ExPASy TrEMBL
Match: A0A5D3D179 (LOB domain-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003110 PE=3 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.0e-99
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120

Query: 121 TTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSKLAG 180
           TTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSKLAG
Sbjct: 121 TTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSKLAG 180

Query: 181 DFCC 185
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of IVF0012409 vs. ExPASy TrEMBL
Match: A0A1S3BGZ5 (LOB domain-containing protein 29 OS=Cucumis melo OX=3656 GN=LOC103489736 PE=3 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.4e-96
Identity = 177/184 (96.20%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120

Query: 121 TTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSKLAG 180
           TTRN TELPYEKSP YYSDDPFLDLQSWLL ESCT AAPEFEPAA+PYFEMSV++SKLAG
Sbjct: 121 TTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAG 180

Query: 181 DFCC 185
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of IVF0012409 vs. ExPASy TrEMBL
Match: A0A0A0K5D4 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G373460 PE=3 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 4.7e-92
Identity = 172/184 (93.48%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSS+ PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVA LREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120

Query: 121 TTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSKLAG 180
           TTRNPTEL YEKSP  YSDDPFLDLQSWLLAESC+  APE EPAA+PYFEMSVV+SKLAG
Sbjct: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180

Query: 181 DFCC 185
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of IVF0012409 vs. ExPASy TrEMBL
Match: A0A6J1DSE8 (LOB domain-containing protein 29-like OS=Momordica charantia OX=3673 GN=LOC111023473 PE=3 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.6e-79
Identity = 152/184 (82.61%), Postives = 163/184 (88.59%), Query Frame = 0


Query: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAAS+SSSSSPCGACKFLRRKCVNGCIFAPYFRHELG SHFSA+HKVFGASNASKLLAHL
Sbjct: 1   MAASASSSSSPCGACKFLRRKCVNGCIFAPYFRHELGTSHFSAVHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120
           PVSHRCEAA+TISYEAQARLQDPIYGCVSHI  LQQQV+NLRAQVA LREQAAQILLNNY
Sbjct: 61  PVSHRCEAAITISYEAQARLQDPIYGCVSHIFTLQQQVLNLRAQVAYLREQAAQILLNNY 120

Query: 121 TTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSKLAG 180
           T RNP EL Y KSP  +S DP  DLQSWLLAE  + AAPEFEPAA+P+ EMS+ +  +AG
Sbjct: 121 TIRNPNELLYGKSP--FSGDPLQDLQSWLLAEDRSAAAPEFEPAAVPFVEMSLADPNVAG 180

Query: 181 DFCC 185
           D CC
Sbjct: 181 DCCC 182

[Close]

BLAST of IVF0012409 vs. ExPASy TrEMBL
Match: A0A6J1KRG7 (LOB domain-containing protein 29-like OS=Cucurbita maxima OX=3661 GN=LOC111498009 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 4.2e-77
Identity = 152/186 (81.72%), Postives = 161/186 (86.56%), Query Frame = 0


Query: 1   MAASSSSSSS--PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLA 60
           MAASSSSSSS  PCGACKFLRRKCVNGCIFAPYFRH+LGASHFSA+HKVFGASNASKLLA
Sbjct: 1   MAASSSSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLA 60

Query: 61  HLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLN 120
           HLPVSHR +AAVTISYEAQARLQDPIYGC+S I ALQ QVMNLRAQVA LREQAAQILLN
Sbjct: 61  HLPVSHRSQAAVTISYEAQARLQDPIYGCISQIFALQHQVMNLRAQVAYLREQAAQILLN 120

Query: 121 NYTTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSKL 180
            Y TRNP EL Y  S L YSD+  LDLQ+WLL ESC+ AAPEFEP A PY EM + +S L
Sbjct: 121 GYITRNPNELLYGNS-LSYSDEQLLDLQTWLLEESCSTAAPEFEPTAAPYVEMGIADSNL 180

Query: 181 AGDFCC 185
           AGDFCC
Sbjct: 181 AGDFCC 185

[Close]

BLAST of IVF0012409 vs. NCBI nr
Match: KAA0042058.1 (LOB domain-containing protein 29 [Cucumis melo var. makuwa] >TYK18001.1 LOB domain-containing protein 29 [Cucumis melo var. makuwa])

HSP 1 Score: 373 bits (957), Expect = 2.55e-130
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120

Query: 121 TTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSKLAG 180
           TTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSKLAG
Sbjct: 121 TTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSKLAG 180

Query: 181 DFCC 184
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of IVF0012409 vs. NCBI nr
Match: XP_008447245.1 (PREDICTED: LOB domain-containing protein 29 [Cucumis melo])

HSP 1 Score: 362 bits (930), Expect = 3.35e-126
Identity = 177/184 (96.20%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120

Query: 121 TTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSKLAG 180
           TTRN TELPYEKSP YYSDDPFLDLQSWLL ESCT AAPEFEPAA+PYFEMSV++SKLAG
Sbjct: 121 TTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAG 180

Query: 181 DFCC 184
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of IVF0012409 vs. NCBI nr
Match: XP_004150342.1 (LOB domain-containing protein 29 [Cucumis sativus] >KGN44703.1 hypothetical protein Csa_015971 [Cucumis sativus])

HSP 1 Score: 347 bits (891), Expect = 2.96e-120
Identity = 172/184 (93.48%), Postives = 176/184 (95.65%), Query Frame = 0


Query: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSS+ PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVA LREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120

Query: 121 TTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSKLAG 180
           TTRNPTEL YEKSP  YSDDPFLDLQSWLLAESC+  APE EPAA+PYFEMSVV+SKLAG
Sbjct: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180

Query: 181 DFCC 184
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of IVF0012409 vs. NCBI nr
Match: XP_038896394.1 (LOB domain-containing protein 29-like [Benincasa hispida])

HSP 1 Score: 333 bits (855), Expect = 8.81e-115
Identity = 166/183 (90.71%), Postives = 174/183 (95.08%), Query Frame = 0


Query: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSSS PCGACKFLRRKCVNGCIFAP+FRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSSPPCGACKFLRRKCVNGCIFAPHFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120
           PVSHRC+AAVTISYEAQARLQDPIYGCVSHI ALQQQVMNLRAQVA LREQAAQILLNNY
Sbjct: 61  PVSHRCDAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNY 120

Query: 121 TTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSKLAG 180
           TTRNP ELPYEKSP +YSDDP LDLQ+WLLAESC+ AAPEFEPAA+PY EMSVV+S LAG
Sbjct: 121 TTRNPIELPYEKSP-FYSDDPLLDLQTWLLAESCSAAAPEFEPAAVPYVEMSVVDSNLAG 180

Query: 181 DFC 183
           +FC
Sbjct: 181 NFC 182

[Close]

BLAST of IVF0012409 vs. NCBI nr
Match: XP_022156602.1 (LOB domain-containing protein 29-like [Momordica charantia])

HSP 1 Score: 305 bits (782), Expect = 2.20e-103
Identity = 152/184 (82.61%), Postives = 163/184 (88.59%), Query Frame = 0


Query: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAAS+SSSSSPCGACKFLRRKCVNGCIFAPYFRHELG SHFSA+HKVFGASNASKLLAHL
Sbjct: 1   MAASASSSSSPCGACKFLRRKCVNGCIFAPYFRHELGTSHFSAVHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120
           PVSHRCEAA+TISYEAQARLQDPIYGCVSHI  LQQQV+NLRAQVA LREQAAQILLNNY
Sbjct: 61  PVSHRCEAAITISYEAQARLQDPIYGCVSHIFTLQQQVLNLRAQVAYLREQAAQILLNNY 120

Query: 121 TTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSKLAG 180
           T RNP EL Y KSP  +S DP  DLQSWLLAE  + AAPEFEPAA+P+ EMS+ +  +AG
Sbjct: 121 TIRNPNELLYGKSP--FSGDPLQDLQSWLLAEDRSAAAPEFEPAAVPFVEMSLADPNVAG 180

Query: 181 DFCC 184
           D CC
Sbjct: 181 DCCC 182

[Close]

BLAST of IVF0012409 vs. TAIR 10
Match: AT3G58190.1 (lateral organ boundaries-domain 29 )

HSP 1 Score: 194.1 bits (492), Expect = 9.7e-50
Identity = 101/151 (66.89%), Postives = 120/151 (79.47%), Query Frame = 0


Query: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           M +SSSSS SPCGACKFLRRKC  GC+FAPYF HE GASHF+AIHKVFGASNASKLL+HL
Sbjct: 1   MTSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQ--ILLN 120
           P+S RCEAA+TISYEAQARLQDPIYGCVSHI ALQQQV+NL+A++  L++QAAQ  I  +
Sbjct: 61  PISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFAD 120

Query: 121 NYTTRNP-------TELPY--EKSPLYYSDD 141
           + T+ NP       T+ PY  +   +Y+  D
Sbjct: 121 SPTSENPNSYYGDTTKAPYHHDHQNIYHHHD 151

[Close]

BLAST of IVF0012409 vs. TAIR 10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 170.2 bits (430), Expect = 1.5e-42
Identity = 85/134 (63.43%), Postives = 103/134 (76.87%), Query Frame = 0


Query: 6   SSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S SPCGACKFLRR+CV GC+FAPYF HE GASHF+AIH+VFGASNASKLL+HLP+  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYTTRNP 125
            EAA TI YEAQAR QDPIYGCVSHI +LQQQV+NL+ Q+  L++QA Q ++        
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMM-------A 121

Query: 126 TELPYEKSPLYYSD 140
            + P  ++P YY D
Sbjct: 122 IDSPSIENPNYYQD 128

[Close]

BLAST of IVF0012409 vs. TAIR 10
Match: AT2G45420.1 (LOB domain-containing protein 18 )

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-39
Identity = 81/139 (58.27%), Postives = 103/139 (74.10%), Query Frame = 0


Query: 3   ASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPV 62
           +S      PCGACKFLRRKCV GCIFAPYF  E G+++F+A+HKVFGASN SKLL H+PV
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 63  SHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYTT 122
             R +A VTI YEAQAR++DPIYGCV+HI ALQQQV+NL+A+V+ L+   A + L    T
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLELPQPQT 148

Query: 123 RNPTELPYEKSPLYYSDDP 142
           R P  +P +  PL+++  P
Sbjct: 149 R-PQPMP-QPQPLFFTPPP 165

[Close]

BLAST of IVF0012409 vs. TAIR 10
Match: AT2G31310.1 (LOB domain-containing protein 14 )

HSP 1 Score: 153.7 bits (387), Expect = 1.5e-37
Identity = 73/105 (69.52%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 10  SPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAA 69
           SPCG CKFLRRKCV GC+FAPYF +E G+S+F+AIHKVFGASN SKL++HLP   RC+A 
Sbjct: 6   SPCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDAV 65

Query: 70  VTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQ 115
            TISYEA +RL DPIYGCVS I +LQQQV++L+AQV  LRE+A++
Sbjct: 66  RTISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVLLREEASR 110

[Close]

BLAST of IVF0012409 vs. TAIR 10
Match: AT2G42430.1 (lateral organ boundaries-domain 16 )

HSP 1 Score: 151.4 bits (381), Expect = 7.2e-37
Identity = 73/110 (66.36%), Postives = 89/110 (80.91%), Query Frame = 0


Query: 4   SSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVS 63
           +++ + SPCGACKFLRRKC + CIFAPYF  E GA+ F+AIHKVFGASN SKLL ++P+ 
Sbjct: 8   TTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIH 67

Query: 64  HRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAA 114
            RCEA VTI+YEAQARL DP+YGCVSHI ALQQQV  L++QV  ++ Q A
Sbjct: 68  DRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIA 117

The following BLAST results are available for this feature:

BLAST of IVF0012409 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2J7	1.4e-48	66.89	LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S...	[more]
Q5UG13	4.3e-42	80.00	LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]
Q9SLB6	2.1e-41	63.43	LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 S...	[more]
O22131	2.2e-38	58.27	LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S...	[more]
Q9SJW5	2.0e-36	69.52	LOB domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=LBD14 PE=1 S...	[more]

BLAST of IVF0012409 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D179	1.0e-99	100.00	LOB domain-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3BGZ5	1.4e-96	96.20	LOB domain-containing protein 29 OS=Cucumis melo OX=3656 GN=LOC103489736 PE=3 SV...	[more]
A0A0A0K5D4	4.7e-92	93.48	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G373460 PE=3 SV...	[more]
A0A6J1DSE8	1.6e-79	82.61	LOB domain-containing protein 29-like OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A6J1KRG7	4.2e-77	81.72	LOB domain-containing protein 29-like OS=Cucurbita maxima OX=3661 GN=LOC11149800...	[more]

BLAST of IVF0012409 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042058.1	2.55e-130	100.00	LOB domain-containing protein 29 [Cucumis melo var. makuwa] >TYK18001.1 LOB doma...	[more]
XP_008447245.1	3.35e-126	96.20	PREDICTED: LOB domain-containing protein 29 [Cucumis melo]	[more]
XP_004150342.1	2.96e-120	93.48	LOB domain-containing protein 29 [Cucumis sativus] >KGN44703.1 hypothetical prot...	[more]
XP_038896394.1	8.81e-115	90.71	LOB domain-containing protein 29-like [Benincasa hispida]	[more]
XP_022156602.1	2.20e-103	82.61	LOB domain-containing protein 29-like [Momordica charantia]	[more]

BLAST of IVF0012409 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58190.1	9.7e-50	66.89	lateral organ boundaries-domain 29	[more]
AT2G42440.1	1.5e-42	63.43	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G45420.1	1.6e-39	58.27	LOB domain-containing protein 18	[more]
AT2G31310.1	1.5e-37	69.52	LOB domain-containing protein 14	[more]
AT2G42430.1	7.2e-37	66.36	lateral organ boundaries-domain 16	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 91..118
None	No IPR available	PANTHER	PTHR31529:SF26	LOB DOMAIN-CONTAINING PROTEIN 17-RELATED	coord: 7..125
None	No IPR available	PANTHER	PTHR31529	LOB DOMAIN CONTAINING PROTEIN	coord: 7..125
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 11..108 e-value: 4.4E-34 score: 117.0
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 10..112 score: 21.54431

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012409.2	IVF0012409.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus