IVF0012399 (gene) Melon (IVF77) v1

Overview


Name	IVF0012399
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Mediator of RNA polymerase II transcription subunit 9
Location	chr04: 16229746 .. 16231253 (-)
RNA-Seq Expression	IVF0012399
Synteny	IVF0012399

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTCCCTGGAGGAGGAAACTGGAGTATGATCCCCAACATCCCTAATCTCACCAATTCCTCCAATCTTTCACAAGAATCCATCTTTCTCCAACAGCAACAATTTTCTCTTCAACATCAGCAGCAGCAGCAGCAGCAGCAAGCATTTCACCACCAACAACAGCAATTTCAGCCCCAAATTCAACCCCAACAGCAATTCCAGCAGCAACAGCTCTCCCCTCAATTTCAACACCAACAACCCTCCCCTCAAATCCAGCCCCAACAACAACCCTCCCCCCAATTTCAACAGCAATTGCAACCCCAACATTTCCCCCAGCAGCAGCAACAGCAATATCATTTTCAACAACAACAGCAGCAGCAGCGGCTTCTTCAACAGCAGCAGCAACAACAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAACAGCAACAACAGCAACAGCAGCAACAACAGCAACAGCAGCAACAACAGCAACAACAGCAACAGCAGCAGCAATATCATCAGCACCAATCTCTAGCTTCCCATTTTCATCTACTTCATGTAATGTGTTCAAACCCCACAACATTTTGAGTGTTCTCTGTGGTACTATATTTTGTGTTTGTTGACATTCTTCGATGTTTTTTGTGTTGTAGCTTGTTGAGAAATTAGCGGATGCAATCGAGAATGGAACTAGAGATCAGCAATCTGATGCATTGGTATCAATTTTGATTGTTTTTAAAATTTTTTCCCTAAGATTAATTATAATCTTGTTTGCTCTGATAATTTGTTCTTGTAACTTTTGGAAGGTTAATGATCTAAATAACCATTTTGAGAAGTGCCAGCAGCTGTTGAACTCAATATCTGGATCACTCAGCTCGAAGGCTATGGTATATTGGAACTCTGTTTTATTTTTCCTGTATGCTAAGGTTCTTGAGTGTTCTTCTTGTGTTTGACATAACCGATTTATCAAATTTGCTGAAGTATAGATGTACAAGTGTTAAACTTTTTCTTTGTTATTGTCTAAATGTTGGTGATGATCGTTTCTAAGACAAGGTTTTAGTAGAGCGTAGTACAATACTCATTGGATATAGAGAGATGAAGTAGCATCTCATTTGTAACCTGTTAACCCTTTACTACAAGTGCAAACCATTAAACCTATGGACTGCTTTTGTGAAGGCTGAGGCTCATCAGGACTTCATGAAATGTCCTATTTCCTTGCGACTTTTGTTTTATTGGTTTGTGGTGAACGATATGTTTTCTTGTGGAAAAAAGAGGTAAGGATAGTGTTTTTTTTTTTTTCGGGTTGCAGACAGTAGAGGGACAGAAGAAAAAGCTAGAAGAACATGAGCAGTTATTAAGTCATCGAAGGTATGGTGATACAATACCATTTCTTGCCTCTGGTTCTCTTTGAATTGTCTCATTCATCAATGTGTATATTAATGGTTCTCTATTCAAATAGGGAATTGATTGGGAAATATAAGAACTCTGTTGAAGAGCTTGTCAAGGGGGAGCCCTAG

mRNA sequence

ATGGATTTCCCTGGAGGAGGAAACTGGACGGATGCAATCGAGAATGGAACTAGAGATCAGCAATCTGATGCATTGGTTAATGATCTAAATAACCATTTTGAGAAGTGCCAGCAGCTGTTGAACTCAATATCTGGATCACTCAGCTCGAAGGCTATGACAGTAGAGGGACAGAAGAAAAAGCTAGAAGAACATGAGCAGTTATTAAGTCATCGAAGGGAATTGATTGGGAAATATAAGAACTCTGTTGAAGAGCTTGTCAAGGGGGAGCCCTAG

Coding sequence (CDS)

ATGGATTTCCCTGGAGGAGGAAACTGGACGGATGCAATCGAGAATGGAACTAGAGATCAGCAATCTGATGCATTGGTTAATGATCTAAATAACCATTTTGAGAAGTGCCAGCAGCTGTTGAACTCAATATCTGGATCACTCAGCTCGAAGGCTATGACAGTAGAGGGACAGAAGAAAAAGCTAGAAGAACATGAGCAGTTATTAAGTCATCGAAGGGAATTGATTGGGAAATATAAGAACTCTGTTGAAGAGCTTGTCAAGGGGGAGCCCTAG

Protein sequence

MDFPGGGNWTDAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKGEP

Homology

[Close]

BLAST of IVF0012399 vs. ExPASy Swiss-Prot
Match: Q8RWA2 (Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana OX=3702 GN=MED9 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.3e-24
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 11  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSH 70
           D IENGTRDQ SDALVN+LN+HF+KCQQLLNSISGSL SK MTV+GQK+ +EE EQLL  
Sbjct: 165 DVIENGTRDQNSDALVNELNSHFDKCQQLLNSISGSLGSKTMTVDGQKRNVEESEQLLQQ 224

Query: 71  RRELIGKYKNSVEELVKGE 90
           RR+LI +Y+ S+EE+V  E
Sbjct: 225 RRDLIVEYRKSIEEIVTME 243

[Close]

BLAST of IVF0012399 vs. ExPASy TrEMBL
Match: A0A0A0LDE7 (Mediator of RNA polymerase II transcription subunit 9 OS=Cucumis sativus OX=3659 GN=MED9 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 8.2e-42
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MDFPGGGNWTDAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKK 60
          MDFPGGGNWTDAIENGTRDQQSDALVNDLNNHFEKC+QLLNSISGSLSSKAMTVEGQKKK
Sbjct: 1  MDFPGGGNWTDAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKK 60

Query: 61 LEEHEQLLSHRRELIGKYKNSVEELVKGEP 91
          LEEHEQLLSHRRELIGKYKNSVEELVKGEP
Sbjct: 61 LEEHEQLLSHRRELIGKYKNSVEELVKGEP 90

[Close]

BLAST of IVF0012399 vs. ExPASy TrEMBL
Match: A0A1S4DWQ6 (Mediator of RNA polymerase II transcription subunit 9 OS=Cucumis melo OX=3656 GN=LOC103490024 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.7e-35
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 11  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSH 70
           DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSH
Sbjct: 179 DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSH 238

Query: 71  RRELIGKYKNSVEELVKGEP 91
           RRELIGKYKNSVEELVKGEP
Sbjct: 239 RRELIGKYKNSVEELVKGEP 258

[Close]

BLAST of IVF0012399 vs. ExPASy TrEMBL
Match: A0A6J1HX54 (Mediator of RNA polymerase II transcription subunit 9 OS=Cucurbita maxima OX=3661 GN=LOC111467667 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 11  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSH 70
           D IENG RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLL+H
Sbjct: 146 DTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNH 205

Query: 71  RRELIGKYKNSVEELVKGE 90
           RRELIGKYKNSVEELVKGE
Sbjct: 206 RRELIGKYKNSVEELVKGE 224

[Close]

BLAST of IVF0012399 vs. ExPASy TrEMBL
Match: A0A6J1FZC2 (mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC111449284 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 11  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSH 70
           D IENG RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLL+H
Sbjct: 164 DTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNH 223

Query: 71  RRELIGKYKNSVEELVKGE 90
           RRELIGKYKNSVEELVKGE
Sbjct: 224 RRELIGKYKNSVEELVKGE 242

[Close]

BLAST of IVF0012399 vs. ExPASy TrEMBL
Match: A0A6J1K651 (mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC111492669 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.0e-32
Identity = 76/80 (95.00%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 11  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSH 70
           DAIE G RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLS+
Sbjct: 163 DAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSY 222

Query: 71  RRELIGKYKNSVEELVKGEP 91
           RRELIGKYK+SVEELVKGEP
Sbjct: 223 RRELIGKYKSSVEELVKGEP 242

[Close]

BLAST of IVF0012399 vs. NCBI nr
Match: XP_016900408.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 9, partial [Cucumis melo])

HSP 1 Score: 153 bits (386), Expect = 4.27e-44
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 11  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSH 70
           DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSH
Sbjct: 179 DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSH 238

Query: 71  RRELIGKYKNSVEELVKGEP 90
           RRELIGKYKNSVEELVKGEP
Sbjct: 239 RRELIGKYKNSVEELVKGEP 258

[Close]

BLAST of IVF0012399 vs. NCBI nr
Match: XP_011652352.2 (mediator of RNA polymerase II transcription subunit 9 [Cucumis sativus] >KAE8651289.1 hypothetical protein Csa_002589 [Cucumis sativus])

HSP 1 Score: 151 bits (382), Expect = 2.01e-43
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 11  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSH 70
           DAIENGTRDQQSDALVNDLNNHFEKC+QLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSH
Sbjct: 185 DAIENGTRDQQSDALVNDLNNHFEKCRQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSH 244

Query: 71  RRELIGKYKNSVEELVKGEP 90
           RRELIGKYKNSVEELVKGEP
Sbjct: 245 RRELIGKYKNSVEELVKGEP 264

[Close]

BLAST of IVF0012399 vs. NCBI nr
Match: XP_038903145.1 (mediator of RNA polymerase II transcription subunit 9 [Benincasa hispida])

HSP 1 Score: 150 bits (380), Expect = 4.37e-43
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 11  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSH 70
           DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLL+H
Sbjct: 188 DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNH 247

Query: 71  RRELIGKYKNSVEELVKGEP 90
           RRELIGKYKNSVEELVKG+P
Sbjct: 248 RRELIGKYKNSVEELVKGDP 267

[Close]

BLAST of IVF0012399 vs. NCBI nr
Match: XP_022968420.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita maxima])

HSP 1 Score: 145 bits (367), Expect = 1.28e-41
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 11  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSH 70
           D IENG RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLL+H
Sbjct: 146 DTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNH 205

Query: 71  RRELIGKYKNSVEELVKGE 89
           RRELIGKYKNSVEELVKGE
Sbjct: 206 RRELIGKYKNSVEELVKGE 224

[Close]

BLAST of IVF0012399 vs. NCBI nr
Match: KAG6574160.1 (Mediator of RNA polymerase II transcription subunit 9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145 bits (367), Expect = 1.99e-41
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 11  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSH 70
           D IENG RDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLL+H
Sbjct: 162 DTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNH 221

Query: 71  RRELIGKYKNSVEELVKGE 89
           RRELIGKYKNSVEELVKGE
Sbjct: 222 RRELIGKYKNSVEELVKGE 240

[Close]

BLAST of IVF0012399 vs. TAIR 10
Match: AT1G55080.1 (MED9; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29580.1); Has 67203 Blast hits to 25757 proteins in 1293 species: Archae - 12; Bacteria - 4374; Metazoa - 24340; Fungi - 7940; Plants - 5927; Viruses - 273; Other Eukaryotes - 24337 (source: NCBI BLink). )

HSP 1 Score: 112.1 bits (279), Expect = 2.4e-25
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 11  DAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSH 70
           D IENGTRDQ SDALVN+LN+HF+KCQQLLNSISGSL SK MTV+GQK+ +EE EQLL  
Sbjct: 165 DVIENGTRDQNSDALVNELNSHFDKCQQLLNSISGSLGSKTMTVDGQKRNVEESEQLLQQ 224

Query: 71  RRELIGKYKNSVEELVKGE 90
           RR+LI +Y+ S+EE+V  E
Sbjct: 225 RRDLIVEYRKSIEEIVTME 243

[Close]

BLAST of IVF0012399 vs. TAIR 10
Match: AT1G29580.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55080.1); Has 28 Blast hits to 28 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 21 QSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLSHRRELIGKYKN 80
          Q   L + L    E  + +  S +   +S A+ V+ QK+ LEE EQLL  R ELI +YK 
Sbjct: 20 QHQTLASHLYPLVENLKDVTESRARDQNSDALYVDVQKQNLEESEQLLQQRMELIEEYKK 79

Query: 81 SVEELVKGEP 91
          SVEE+VK EP
Sbjct: 80 SVEEIVKKEP 89

The following BLAST results are available for this feature:

BLAST of IVF0012399 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWA2	3.3e-24	70.89	Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana OX...	[more]

BLAST of IVF0012399 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDE7	8.2e-42	98.89	Mediator of RNA polymerase II transcription subunit 9 OS=Cucumis sativus OX=3659...	[more]
A0A1S4DWQ6	5.7e-35	100.00	Mediator of RNA polymerase II transcription subunit 9 OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1HX54	1.2e-32	96.20	Mediator of RNA polymerase II transcription subunit 9 OS=Cucurbita maxima OX=366...	[more]
A0A6J1FZC2	1.2e-32	96.20	mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata...	[more]
A0A6J1K651	2.0e-32	95.00	mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita maxima O...	[more]

BLAST of IVF0012399 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900408.1	4.27e-44	100.00	PREDICTED: mediator of RNA polymerase II transcription subunit 9, partial [Cucum...	[more]
XP_011652352.2	2.01e-43	98.75	mediator of RNA polymerase II transcription subunit 9 [Cucumis sativus] >KAE8651...	[more]
XP_038903145.1	4.37e-43	97.50	mediator of RNA polymerase II transcription subunit 9 [Benincasa hispida]	[more]
XP_022968420.1	1.28e-41	96.20	mediator of RNA polymerase II transcription subunit 9-like [Cucurbita maxima]	[more]
KAG6574160.1	1.99e-41	96.20	Mediator of RNA polymerase II transcription subunit 9, partial [Cucurbita argyro...	[more]

BLAST of IVF0012399 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55080.1	2.4e-25	70.89	MED9; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G2958...	[more]
AT1G29580.1	1.4e-06	44.29	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011425	Mediator of RNA polymerase II transcription subunit 9	PFAM	PF07544	Med9	coord: 13..82 e-value: 1.5E-8 score: 34.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
IPR038790	Mediator of RNA polymerase II transcription subunit 9, plant	PANTHER	PTHR37188	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT-RELATED	coord: 8..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012399.1	IVF0012399.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity