IVF0012397 (gene) Melon (IVF77) v1

Overview


Name	IVF0012397
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribonuclease H
Location	chr12: 8835194 .. 8836727 (+)
RNA-Seq Expression	IVF0012397
Synteny	IVF0012397

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTTGAAATACTAGGTCCTTTTGCTTATAAGGATAACCATGTCGTTCCATGGAAGTATGAATGTCACTTCATCACAGACAATGTCGTTTCTCCAACAGTCAAAGGAATAACTCGTAGTGGAAGGTGTTATACACCAGATAATTTAAAAGGTGTCTCAAAAGAGGATGAAGTTCGACAATGTAAAGGCAAAGCTATAGAAATGGCAGTTGAAGATGATCTAAATGATCTGAGCAAGGTTTTTACTGAGAAGACCACATTAGTTGAGAAAGAGACAGATCATGAAGTTGTCTCCAAAGAGAAAGCCTGTGAATTTTTTAAATTAATTAAGCAGAGTGAGTATAAAGTGATTGAACAATTACATCGTACCCCAGCTCGTATATCGATGTTGTCATTATTCATGTACTCTGAACCGAACCATAAGGTTTTGTTGGATATCTTAAATAGAGCCCATGTAGGACATGATATTTCAGTGAATGCATTTAGTGAAATCGTGGAAAATATAACTGCTACAAAATGCATTTCCTTTACAGATAAAGAAATTTCCCCTGAAGGTACTAGACATACTAAGACATTGCACATATCCATGAAGTGTAAGGACCATCACGTGGCGAGGGTCCTGGTAGATAATGGTTCATCTTTAAATATAATGTCGAGATCCACATTGATGAAACTCCCCATAGATCCATCGTACCTAAGACCAAGTACTATGGTTGTAAGAGCCTTTAACAGTGCACGTAGAGAAGTAATCGGGGATATAGATATCCCATTAAAAATTGGGCCTTCCACTTTCAACGTTTCATTCCAAGTGATGGATATAAATTCCTCATACAGATGTTTACTAGGATGACCTTGGATTCCTTCAGCAGGGGCAGTCCCATCTTCACTGCACCAAAGGTTGAAATTTAGTGTAGAAGGTGGTCAAGCTATTGTCTATAGAGAAGAGGACATGTTTGTAACGAAAACATCAACACTTCCTTATGTTGAAGCAATAGAGGAAGCTCTAGAATGTTCTTATAGATCGTTTGAAATTGCTAATGCTACTATCTTTCCAACAGGAGGTTTGAGTATGGATCGTTATGTGTCCAAGACATTCTCTAATGATTGCAAAGACAATGATCAAAAGTGGTTTCCAAATGCACAAGGGATTGGAAAAAGATAATCAAGGGGACTCAGAAGTGATTTCTCTTTCTAAAGCCAAGGAAAAGTTTGGTTTGGGCTATAAGCCAATAGCTTCTGAATGGGAGAAGGTTCGAACAAAAAAGAAAGAAAAGAGAAGCGCGCTCCTTGTAGGACGCGAGATGAAAGAGGAAAGAATAAGCATACCTCATTTATCTGAGACATTTAAGCCTAGAGAATTGTTGTTTGATACCGACCAGAGAAAAAGACGTAAAGGAGATTCTGAGATCTCAATTGTTGTTGTCTCCGAGAATACTATTCTGCCTCATCCTTTGGTTCATCAGTGTCCGCCAGGATTTGAGTTGAACAATTGGGAGATCAAGAAGACATTGGAAGTCACTAAGGGATCGTAA

mRNA sequence

ATGACTGTTGAAATACTAGGTCCTTTTGCTTATAAGGATAACCATGTCGTTCCATGGAAGTATGAATGTCACTTCATCACAGACAATGTCGTTTCTCCAACAGTCAAAGGAATAACTCGTAGTGGAAGGTGTTATACACCAGATAATTTAAAAGGTGTCTCAAAAGAGGATGAAGTTCGACAATGTAAAGGCAAAGCTATAGAAATGGCAGTTGAAGATGATCTAAATGATCTGAGCAAGGTTTTTACTGAGAAGACCACATTAGTTGAGAAAGAGACAGATCATGAAGTTGTCTCCAAAGAGAAAGCCTGTGAATTTTTTAAATTAATTAAGCAGAGTGAGTATAAAGTGATTGAACAATTACATCGTACCCCAGCTCGTATATCGATGTTGTCATTATTCATGTACTCTGAACCGAACCATAAGGTTTTGTTGGATATCTTAAATAGAGCCCATGTAGGACATGATATTTCAGTGAATGCATTTAGTGAAATCGTGGAAAATATAACTGCTACAAAATGCATTTCCTTTACAGATAAAGAAATTTCCCCTGAAGCAGGGGCAGTCCCATCTTCACTGCACCAAAGGTTGAAATTTAGTGTAGAAGGTGGTCAAGCTATTGTCTATAGAGAAGAGGACATGTTTGTAACGAAAACATCAACACTTCCTTATGTTGAAGCAATAGAGGAAGCTCTAGAATGTTCTTATAGATCGTTTGAAATTGCTAATGCTACTATCTTTCCAACAGGAGCCAAGGAAAAGTTTGGTTTGGGCTATAAGCCAATAGCTTCTGAATGGGAGAAGGTTCGAACAAAAAAGAAAGAAAAGAGAAGCGCGCTCCTTGTAGGACGCGAGATGAAAGAGGAAAGAATAAGCATACCTCATTTATCTGAGACATTTAAGCCTAGAGAATTGTTGTTTGATACCGACCAGAGAAAAAGACGTAAAGGAGATTCTGAGATCTCAATTGTTGTTGTCTCCGAGAATACTATTCTGCCTCATCCTTTGGTTCATCAGTGTCCGCCAGGATTTGAGTTGAACAATTGGGAGATCAAGAAGACATTGGAAGTCACTAAGGGATCGTAA

Coding sequence (CDS)

ATGACTGTTGAAATACTAGGTCCTTTTGCTTATAAGGATAACCATGTCGTTCCATGGAAGTATGAATGTCACTTCATCACAGACAATGTCGTTTCTCCAACAGTCAAAGGAATAACTCGTAGTGGAAGGTGTTATACACCAGATAATTTAAAAGGTGTCTCAAAAGAGGATGAAGTTCGACAATGTAAAGGCAAAGCTATAGAAATGGCAGTTGAAGATGATCTAAATGATCTGAGCAAGGTTTTTACTGAGAAGACCACATTAGTTGAGAAAGAGACAGATCATGAAGTTGTCTCCAAAGAGAAAGCCTGTGAATTTTTTAAATTAATTAAGCAGAGTGAGTATAAAGTGATTGAACAATTACATCGTACCCCAGCTCGTATATCGATGTTGTCATTATTCATGTACTCTGAACCGAACCATAAGGTTTTGTTGGATATCTTAAATAGAGCCCATGTAGGACATGATATTTCAGTGAATGCATTTAGTGAAATCGTGGAAAATATAACTGCTACAAAATGCATTTCCTTTACAGATAAAGAAATTTCCCCTGAAGCAGGGGCAGTCCCATCTTCACTGCACCAAAGGTTGAAATTTAGTGTAGAAGGTGGTCAAGCTATTGTCTATAGAGAAGAGGACATGTTTGTAACGAAAACATCAACACTTCCTTATGTTGAAGCAATAGAGGAAGCTCTAGAATGTTCTTATAGATCGTTTGAAATTGCTAATGCTACTATCTTTCCAACAGGAGCCAAGGAAAAGTTTGGTTTGGGCTATAAGCCAATAGCTTCTGAATGGGAGAAGGTTCGAACAAAAAAGAAAGAAAAGAGAAGCGCGCTCCTTGTAGGACGCGAGATGAAAGAGGAAAGAATAAGCATACCTCATTTATCTGAGACATTTAAGCCTAGAGAATTGTTGTTTGATACCGACCAGAGAAAAAGACGTAAAGGAGATTCTGAGATCTCAATTGTTGTTGTCTCCGAGAATACTATTCTGCCTCATCCTTTGGTTCATCAGTGTCCGCCAGGATTTGAGTTGAACAATTGGGAGATCAAGAAGACATTGGAAGTCACTAAGGGATCGTAA

Protein sequence

MTVEILGPFAYKDNHVVPWKYECHFITDNVVSPTVKGITRSGRCYTPDNLKGVSKEDEVRQCKGKAIEMAVEDDLNDLSKVFTEKTTLVEKETDHEVVSKEKACEFFKLIKQSEYKVIEQLHRTPARISMLSLFMYSEPNHKVLLDILNRAHVGHDISVNAFSEIVENITATKCISFTDKEISPEAGAVPSSLHQRLKFSVEGGQAIVYREEDMFVTKTSTLPYVEAIEEALECSYRSFEIANATIFPTGAKEKFGLGYKPIASEWEKVRTKKKEKRSALLVGREMKEERISIPHLSETFKPRELLFDTDQRKRRKGDSEISIVVVSENTILPHPLVHQCPPGFELNNWEIKKTLEVTKGS

Homology

[Close]

BLAST of IVF0012397 vs. ExPASy TrEMBL
Match: A0A5A7V681 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00760 PE=4 SV=1)

HSP 1 Score: 558.5 bits (1438), Expect = 2.0e-155
Identity = 318/510 (62.35%), Postives = 328/510 (64.31%), Query Frame = 0


Query: 1    MTVEILGPFAYKDNHVVPWKYECHFITDNVVSPTVKGITRSGRCYTPDNLKGVSKEDEVR 60
            MTVEI GPFAYKDNH VPWKYEC FITDNVVS TV GITRSGRCYTPDNLK VSKEDEVR
Sbjct: 628  MTVEIPGPFAYKDNHAVPWKYECQFITDNVVSATVGGITRSGRCYTPDNLKDVSKEDEVR 687

Query: 61   QCKGKAIEMAVEDDLNDLSKVFTEKTTLVEKETDHEVVSKEKACEFFKLIKQSEYKVIEQ 120
            + KGKAIEMA EDDLNDLSKVFT+K TLVEKETDHEVVSKE+ACEF KLIKQSEYKVIEQ
Sbjct: 688  RRKGKAIEMAGEDDLNDLSKVFTKKNTLVEKETDHEVVSKEEACEFLKLIKQSEYKVIEQ 747

Query: 121  LHRTPARISMLSLFMYSEPNHKVLLDILNRAHVGHDISVNAFSEIVENITATKCISFTDK 180
            LHRTPARISMLSLFMYSEP+ KVLLDILNRAHVGHDISVNA SEIVENI AT CISFTD+
Sbjct: 748  LHRTPARISMLSLFMYSEPHRKVLLDILNRAHVGHDISVNALSEIVENIIATNCISFTDE 807

Query: 181  EISPE------------------------------------------------------- 240
            EI PE                                                       
Sbjct: 808  EIPPEGTGHTKALHISVKCKDHHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLRPSTMVV 867

Query: 241  -------------------------------------------------AGAVPSSLHQR 300
                                                             AGAVPSSLHQR
Sbjct: 868  RAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDINSSYSCLLGRPWIHSAGAVPSSLHQR 927

Query: 301  LKFSVEGGQAIVYREEDMFVTKTSTLPYVEAIEEALECSYRSFEIANATIFPT------- 360
            LKFSVE GQAIVY EEDMFVTKTS LPYVEA EEALECSYRSFEIANATIFPT       
Sbjct: 928  LKFSVECGQAIVYGEEDMFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSMDR 987

Query: 361  --------------------------------------GAKEKFGLGYKPIASEWEKVRT 362
                                                   AKE FGLGYKP+ SEWEKVR 
Sbjct: 988  YVSKTSLMIAKTMIKSGFQMHKGLGKDNQGDSEVISLPKAKENFGLGYKPVTSEWEKVRA 1047

[Close]

BLAST of IVF0012397 vs. ExPASy TrEMBL
Match: A0A5A7UA36 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00210 PE=4 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 3.7e-141
Identity = 277/374 (74.06%), Postives = 277/374 (74.06%), Query Frame = 0


Query: 1   MTVEILGPFAYKDNHVVPWKYECHFITDNVVSPTVKGITRSGRCYTPDNLKGVSKEDEVR 60
           MTVEILGPFAYKDNHVVPWKYECHFITDNVVSPTVKGITRSGRCYTPDNLKGVSKEDEVR
Sbjct: 51  MTVEILGPFAYKDNHVVPWKYECHFITDNVVSPTVKGITRSGRCYTPDNLKGVSKEDEVR 110

Query: 61  QCKGKAIEMAVEDDLNDLSKVFTEKTTLVEKETDHEVVSKEKACEFFKLIKQSEYKVIEQ 120
           QCKGKAIEMAVEDDLNDLSKVFTEKTTLVEKETDHEVVSKEK                  
Sbjct: 111 QCKGKAIEMAVEDDLNDLSKVFTEKTTLVEKETDHEVVSKEK------------------ 170

Query: 121 LHRTPARISMLSLFMYSEPNHKVLLDILNRAHVGHDISVNAFSEIVENITATKCISFTDK 180
                                                                       
Sbjct: 171 ------------------------------------------------------------ 230

Query: 181 EISPEAGAVPSSLHQRLKFSVEGGQAIVYREEDMFVTKTSTLPYVEAIEEALECSYRSFE 240
                A AVPSSLHQRLKFSVEGGQAIVYREEDMFVTKTSTLPYVEAIEEALECSYRSFE
Sbjct: 231 -----AWAVPSSLHQRLKFSVEGGQAIVYREEDMFVTKTSTLPYVEAIEEALECSYRSFE 290

Query: 241 IANATIFPTG-------------AKEKFGLGYKPIASEWEKVRTKKKEKRSALLVGREMK 300
           IANATIFPTG             AKEKFGLGYKPIASEWEKVRTKKKEKRSALLVGREMK
Sbjct: 291 IANATIFPTGDNQGDSEVISLSKAKEKFGLGYKPIASEWEKVRTKKKEKRSALLVGREMK 341

Query: 301 EERISIPHLSETFKPRELLFDTDQRKRRKGDSEISIVVVSENTILPHPLVHQCPPGFELN 360
           EERISIPHLSETFKPRELLFDTDQRKRRKGDSEISIVVVSENTILPHPLVHQCPPGFELN
Sbjct: 351 EERISIPHLSETFKPRELLFDTDQRKRRKGDSEISIVVVSENTILPHPLVHQCPPGFELN 341

Query: 361 NWEIKKTLEVTKGS 362
           NWEIKKTLEVTKGS
Sbjct: 411 NWEIKKTLEVTKGS 341

[Close]

BLAST of IVF0012397 vs. ExPASy TrEMBL
Match: A0A5A7VAU5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00060 PE=4 SV=1)

HSP 1 Score: 495.7 bits (1275), Expect = 1.6e-136
Identity = 287/479 (59.92%), Postives = 307/479 (64.09%), Query Frame = 0


Query: 1    MTVEILGPFAYKDNHVVPWKYECHFITDNVVSPTVKGITRSGRCYTPDNLKGVSKEDEVR 60
            MTVEI GPFAYKDNH VPWKYEC FITDNVV  TV+GITRSGRCYTPDNLK VSKEDEVR
Sbjct: 628  MTVEIPGPFAYKDNHAVPWKYECQFITDNVVFATVEGITRSGRCYTPDNLKDVSKEDEVR 687

Query: 61   QCKGKAIEMAVEDDLNDLSKVFTEKTTLVEKETDHEVVSKEKACEFFKLIKQSEYKVIEQ 120
            + KGKAIEMA EDDLNDLSKVFTEK TLVEKETDHEVVSKE+ACEF KLIKQSEYKVIEQ
Sbjct: 688  RRKGKAIEMAGEDDLNDLSKVFTEKNTLVEKETDHEVVSKEEACEFLKLIKQSEYKVIEQ 747

Query: 121  LHRTPARISMLSLFMYSEPNHKVLLDILNRAHVGHDISVNAFSEIVENITATKCISFTDK 180
            LHRTPARISMLSLF YSEP+ KVLLDILNRAHVGHDISVNA SEIVENITAT CISFTD+
Sbjct: 748  LHRTPARISMLSLFTYSEPHRKVLLDILNRAHVGHDISVNALSEIVENITATNCISFTDE 807

Query: 181  EISPEAGAVPSSLHQRLKFS--------VEGGQAIVYREE--------DMFVTKTSTL-- 240
            EI PE      +LH  +K          V+ G ++             D    + ST+  
Sbjct: 808  EIPPEGTGHTKALHISVKCKDHHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLRPSTMVV 867

Query: 241  --------------------------------------------PYVE---AIEEALE-- 300
                                                        P++    A+  +L   
Sbjct: 868  RAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDINSSYSCLLGRPWIHSAGAVPSSLHQS 927

Query: 301  ------CSYRSFEIANATIFPT-------------------------------------- 360
                  CSYRSFEIANATIFPT                                      
Sbjct: 928  NGRSSGCSYRSFEIANATIFPTEGLSMDRYVSKTSLMIAKTMIKSGFQMHKGLGKDNQGD 987

Query: 361  -------GAKEKFGLGYKPIASEWEKVRTKKKEKRSALLVGREMKEERISIPHLSETFKP 362
                    AKEKFGLGYKP+ SEWEKVR K KEKRSALL+G EMKEERISIPHLSETFK 
Sbjct: 988  SEVISLPKAKEKFGLGYKPVTSEWEKVRAKNKEKRSALLMGCEMKEERISIPHLSETFKL 1047

[Close]

BLAST of IVF0012397 vs. ExPASy TrEMBL
Match: A0A5A7U7X5 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001520 PE=4 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 2.6e-118
Identity = 251/400 (62.75%), Postives = 284/400 (71.00%), Query Frame = 0


Query: 1   MTVEILGPFAYKDNHVVPWKYECHFITDNVVSPTVKGITRSGRCYTPDNLKGVSKEDEVR 60
           MTVEI GPFAYKDNHVVPWKYEC FITDNVVS T+ GITRSGRCYTPDNLK VSKEDEVR
Sbjct: 1   MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVR 60

Query: 61  QCKGKAIEMAVEDDLNDLSKVFTEKTTLVEKETDHEVVSKEKACEFFKLIKQSEYKVIEQ 120
           + KGKAIEMA EDDLNDLSKVFTEKTTLVEKETDHEVVSKE+ACEF KLIKQ++    E 
Sbjct: 61  RRKGKAIEMAGEDDLNDLSKVFTEKTTLVEKETDHEVVSKEEACEFLKLIKQNK----EI 120

Query: 121 LHRTPARISMLSLFMYSEPNH--KVLLD------ILNRAHV-----------GHDISVNA 180
             +       L + +  + +H  +VL+D      I++R+ +              + V A
Sbjct: 121 PPKGTGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTA 180

Query: 181 FS----EIVENI-------TATKCISFTDKEISP------------EAGAVPSSLHQRLK 240
           F     E++ +I        +T  +SF   +++              AGAVPSSLHQRLK
Sbjct: 181 FDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLK 240

Query: 241 FSVEGGQAIVYREEDMFVTKTSTLPYVEAIEEALECSYRSFEIANATIFPTGAKEKFGLG 300
           FS+EGGQAIVY E+DMFVTKTS LPYVEAIEEALE                 +KEKFGLG
Sbjct: 241 FSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALE-----------------SKEKFGLG 300

Query: 301 YKPIASEWEKVRTKKKEKRSALLVGREMKEERISIPHLSETFKPRELLFDTDQRKRRKGD 359
           YKPIASEWEKVR KKKEKRS LL+GREMKEERI+IPHL ETFKP ELLFDT+QRKR   D
Sbjct: 301 YKPIASEWEKVRAKKKEKRSVLLMGREMKEERINIPHLFETFKPGELLFDTNQRKRCNKD 360

[Close]

BLAST of IVF0012397 vs. ExPASy TrEMBL
Match: A0A5A7TI68 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00990 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 3.5e-107
Identity = 246/452 (54.42%), Postives = 275/452 (60.84%), Query Frame = 0


Query: 1   MTVEILGPFAYKDNHVVPWKYECHFITDNVVSPTVKGITRSGRCYTPDNLKGVSKEDEVR 60
           MTVEI GPFAYKDNHVVPWKYEC FITDNVVS T+  ITRSGRCYTPDNLK V KEDEVR
Sbjct: 61  MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGEITRSGRCYTPDNLKDVFKEDEVR 120

Query: 61  QCKGKAIEMAVEDDLNDLSKVFTE----------------KTTLVE--------KETDHE 120
           + KGKAIEMA EDDLNDLSKV  +                 + +VE          TD E
Sbjct: 121 RRKGKAIEMAGEDDLNDLSKVLLDILNRAHVGHDISVVDALSEIVENITATHCISFTDEE 180

Query: 121 VVSK----EKACEFFKLIKQ-----------SEYKVIEQ--LHRTP-----ARISMLSLF 180
           +  K     KA       K            S   ++ +  L + P      R S++ + 
Sbjct: 181 IPPKGTGHTKALHISVKCKDHHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLRSSIMVVR 240

Query: 181 MYSEPNHKVLLDILNRAHVGHDISVNAFSEIVENITATKCISFTDKEISPEAGAVPSSLH 240
            +     +V+ DI     +G   + N   ++++  ++  C+    +     AGAVPS LH
Sbjct: 241 AFDGARREVIRDIDIPLKIGPS-TFNVSVQVMDVNSSYSCL--LGRPWIHSAGAVPSLLH 300

Query: 241 QRLKFSVEGGQAIVYREEDMFVTKTSTLPYVEAIEEALECSYRSFEIANATIFP------ 300
           QRLKFSVEGGQAIVY E++MFVTK STLPYVEA EEALECSYRSFEIANATIFP      
Sbjct: 301 QRLKFSVEGGQAIVYGEDNMFVTKISTLPYVEATEEALECSYRSFEIANATIFPIEGLSM 360

Query: 301 ---------------------------------------TGAKEKFGLGYKPIASEWEKV 360
                                                    AKEKFGLGYKP ASEWEKV
Sbjct: 361 DRYVSKTSLMIAKTMIKSCFQMHKGLGKDNQGDSKVISLPKAKEKFGLGYKPAASEWEKV 420

Query: 361 RTKKKEKRSALLVGREMKEERISIPHLSETFKPRELLFDTDQRKRRKGDSEISIVVVSEN 362
           R KKKEKRS LLVG EMKEERISIPHL ETFKP ELLFDT+QRKRR  DSEISI VVSEN
Sbjct: 421 RAKKKEKRSTLLVGCEMKEERISIPHLFETFKPEELLFDTNQRKRRNEDSEISIAVVSEN 480

[Close]

BLAST of IVF0012397 vs. NCBI nr
Match: KAA0061241.1 (uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 552 bits (1423), Expect = 6.90e-185
Identity = 318/510 (62.35%), Postives = 328/510 (64.31%), Query Frame = 0


Query: 1    MTVEILGPFAYKDNHVVPWKYECHFITDNVVSPTVKGITRSGRCYTPDNLKGVSKEDEVR 60
            MTVEI GPFAYKDNH VPWKYEC FITDNVVS TV GITRSGRCYTPDNLK VSKEDEVR
Sbjct: 628  MTVEIPGPFAYKDNHAVPWKYECQFITDNVVSATVGGITRSGRCYTPDNLKDVSKEDEVR 687

Query: 61   QCKGKAIEMAVEDDLNDLSKVFTEKTTLVEKETDHEVVSKEKACEFFKLIKQSEYKVIEQ 120
            + KGKAIEMA EDDLNDLSKVFT+K TLVEKETDHEVVSKE+ACEF KLIKQSEYKVIEQ
Sbjct: 688  RRKGKAIEMAGEDDLNDLSKVFTKKNTLVEKETDHEVVSKEEACEFLKLIKQSEYKVIEQ 747

Query: 121  LHRTPARISMLSLFMYSEPNHKVLLDILNRAHVGHDISVNAFSEIVENITATKCISFTDK 180
            LHRTPARISMLSLFMYSEP+ KVLLDILNRAHVGHDISVNA SEIVENI AT CISFTD+
Sbjct: 748  LHRTPARISMLSLFMYSEPHRKVLLDILNRAHVGHDISVNALSEIVENIIATNCISFTDE 807

Query: 181  EISPE------------------------------------------------------- 240
            EI PE                                                       
Sbjct: 808  EIPPEGTGHTKALHISVKCKDHHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLRPSTMVV 867

Query: 241  -------------------------------------------------AGAVPSSLHQR 300
                                                             AGAVPSSLHQR
Sbjct: 868  RAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDINSSYSCLLGRPWIHSAGAVPSSLHQR 927

Query: 301  LKFSVEGGQAIVYREEDMFVTKTSTLPYVEAIEEALECSYRSFEIANATIFPTG------ 360
            LKFSVE GQAIVY EEDMFVTKTS LPYVEA EEALECSYRSFEIANATIFPT       
Sbjct: 928  LKFSVECGQAIVYGEEDMFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSMDR 987

[Close]

BLAST of IVF0012397 vs. NCBI nr
Match: KAA0052108.1 (uncharacterized protein E6C27_scaffold578G00960 [Cucumis melo var. makuwa] >TYJ98088.1 uncharacterized protein E5676_scaffold565G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 504 bits (1298), Expect = 3.98e-171
Identity = 277/374 (74.06%), Postives = 277/374 (74.06%), Query Frame = 0


Query: 1   MTVEILGPFAYKDNHVVPWKYECHFITDNVVSPTVKGITRSGRCYTPDNLKGVSKEDEVR 60
           MTVEILGPFAYKDNHVVPWKYECHFITDNVVSPTVKGITRSGRCYTPDNLKGVSKEDEVR
Sbjct: 51  MTVEILGPFAYKDNHVVPWKYECHFITDNVVSPTVKGITRSGRCYTPDNLKGVSKEDEVR 110

Query: 61  QCKGKAIEMAVEDDLNDLSKVFTEKTTLVEKETDHEVVSKEKACEFFKLIKQSEYKVIEQ 120
           QCKGKAIEMAVEDDLNDLSKVFTEKTTLVEKETDHEVVSKEKA                 
Sbjct: 111 QCKGKAIEMAVEDDLNDLSKVFTEKTTLVEKETDHEVVSKEKAW---------------- 170

Query: 121 LHRTPARISMLSLFMYSEPNHKVLLDILNRAHVGHDISVNAFSEIVENITATKCISFTDK 180
                                                                       
Sbjct: 171 ------------------------------------------------------------ 230

Query: 181 EISPEAGAVPSSLHQRLKFSVEGGQAIVYREEDMFVTKTSTLPYVEAIEEALECSYRSFE 240
                  AVPSSLHQRLKFSVEGGQAIVYREEDMFVTKTSTLPYVEAIEEALECSYRSFE
Sbjct: 231 -------AVPSSLHQRLKFSVEGGQAIVYREEDMFVTKTSTLPYVEAIEEALECSYRSFE 290

Query: 241 IANATIFPTG-------------AKEKFGLGYKPIASEWEKVRTKKKEKRSALLVGREMK 300
           IANATIFPTG             AKEKFGLGYKPIASEWEKVRTKKKEKRSALLVGREMK
Sbjct: 291 IANATIFPTGDNQGDSEVISLSKAKEKFGLGYKPIASEWEKVRTKKKEKRSALLVGREMK 341

Query: 301 EERISIPHLSETFKPRELLFDTDQRKRRKGDSEISIVVVSENTILPHPLVHQCPPGFELN 360
           EERISIPHLSETFKPRELLFDTDQRKRRKGDSEISIVVVSENTILPHPLVHQCPPGFELN
Sbjct: 351 EERISIPHLSETFKPRELLFDTDQRKRRKGDSEISIVVVSENTILPHPLVHQCPPGFELN 341

[Close]

BLAST of IVF0012397 vs. NCBI nr
Match: KAA0065293.1 (uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 489 bits (1260), Expect = 1.40e-156
Identity = 287/479 (59.92%), Postives = 307/479 (64.09%), Query Frame = 0


Query: 1    MTVEILGPFAYKDNHVVPWKYECHFITDNVVSPTVKGITRSGRCYTPDNLKGVSKEDEVR 60
            MTVEI GPFAYKDNH VPWKYEC FITDNVV  TV+GITRSGRCYTPDNLK VSKEDEVR
Sbjct: 628  MTVEIPGPFAYKDNHAVPWKYECQFITDNVVFATVEGITRSGRCYTPDNLKDVSKEDEVR 687

Query: 61   QCKGKAIEMAVEDDLNDLSKVFTEKTTLVEKETDHEVVSKEKACEFFKLIKQSEYKVIEQ 120
            + KGKAIEMA EDDLNDLSKVFTEK TLVEKETDHEVVSKE+ACEF KLIKQSEYKVIEQ
Sbjct: 688  RRKGKAIEMAGEDDLNDLSKVFTEKNTLVEKETDHEVVSKEEACEFLKLIKQSEYKVIEQ 747

Query: 121  LHRTPARISMLSLFMYSEPNHKVLLDILNRAHVGHDISVNAFSEIVENITATKCISFTDK 180
            LHRTPARISMLSLF YSEP+ KVLLDILNRAHVGHDISVNA SEIVENITAT CISFTD+
Sbjct: 748  LHRTPARISMLSLFTYSEPHRKVLLDILNRAHVGHDISVNALSEIVENITATNCISFTDE 807

Query: 181  EISPEAGAVPSSLHQRLKFS--------VEGGQAIVYREE--------DMFVTKTSTL-- 240
            EI PE      +LH  +K          V+ G ++             D    + ST+  
Sbjct: 808  EIPPEGTGHTKALHISVKCKDHHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLRPSTMVV 867

Query: 241  --------------------------------------------PYVE---AIEEALE-- 300
                                                        P++    A+  +L   
Sbjct: 868  RAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDINSSYSCLLGRPWIHSAGAVPSSLHQS 927

Query: 301  ------CSYRSFEIANATIFPTG------------------------------------- 360
                  CSYRSFEIANATIFPT                                      
Sbjct: 928  NGRSSGCSYRSFEIANATIFPTEGLSMDRYVSKTSLMIAKTMIKSGFQMHKGLGKDNQGD 987

[Close]

BLAST of IVF0012397 vs. NCBI nr
Match: KAA0043020.1 (uncharacterized protein E6C27_scaffold75G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 414 bits (1064), Expect = 2.15e-137
Identity = 262/511 (51.27%), Postives = 270/511 (52.84%), Query Frame = 0


Query: 1   MTVEILGPFAYKDNHVVPWKYECHFITDNVVSPTVKGITRSGRCYTPDNLKGVSKEDEVR 60
           MTVEI GPFAYKDNHVVPWKYEC FITDNVVS T+  ITRSGRCYTPDNLK V KEDEVR
Sbjct: 61  MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGEITRSGRCYTPDNLKDVFKEDEVR 120

Query: 61  QCKGKAIEMAVEDDLNDLSKVFTEKTTLVEKETDHEVVSKEKACEFFKLIKQSEYKVIEQ 120
           + KGKAIEMA EDDLNDLS                                         
Sbjct: 121 RRKGKAIEMAGEDDLNDLS----------------------------------------- 180

Query: 121 LHRTPARISMLSLFMYSEPNHKVLLDILNRAHVGHDISV-NAFSEIVENITATKCISFTD 180
                                KVLLDILNRAHVGHDISV +A SEIVENITAT CISFTD
Sbjct: 181 ---------------------KVLLDILNRAHVGHDISVVDALSEIVENITATHCISFTD 240

Query: 181 KEISPE------------------------------------------------------ 240
           +EI P+                                                      
Sbjct: 241 EEIPPKGTGHTKALHISVKCKDHHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLRSSIMV 300

Query: 241 --------------------------------------------------AGAVPSSLHQ 300
                                                             AGAVPS LHQ
Sbjct: 301 VRAFDGARREVIRDIDIPLKIGPSTFNVSVQVMDVNSSYSCLLGRPWIHSAGAVPSLLHQ 360

Query: 301 RLKFSVEGGQAIVYREEDMFVTKTSTLPYVEAIEEALECSYRSFEIANATIFPTG----- 360
           RLKFSVEGGQAIVY E++MFVTK STLPYVEA EEALECSYRSFEIANATIFP       
Sbjct: 361 RLKFSVEGGQAIVYGEDNMFVTKISTLPYVEATEEALECSYRSFEIANATIFPIEGLSMD 420

[Close]

BLAST of IVF0012397 vs. NCBI nr
Match: KAA0049671.1 (uncharacterized protein E6C27_scaffold76G00060 [Cucumis melo var. makuwa] >TYK12201.1 uncharacterized protein E5676_scaffold106G001520 [Cucumis melo var. makuwa])

HSP 1 Score: 429 bits (1103), Expect = 5.23e-137
Identity = 251/400 (62.75%), Postives = 284/400 (71.00%), Query Frame = 0


Query: 1   MTVEILGPFAYKDNHVVPWKYECHFITDNVVSPTVKGITRSGRCYTPDNLKGVSKEDEVR 60
           MTVEI GPFAYKDNHVVPWKYEC FITDNVVS T+ GITRSGRCYTPDNLK VSKEDEVR
Sbjct: 1   MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVR 60

Query: 61  QCKGKAIEMAVEDDLNDLSKVFTEKTTLVEKETDHEVVSKEKACEFFKLIKQSEYKVIEQ 120
           + KGKAIEMA EDDLNDLSKVFTEKTTLVEKETDHEVVSKE+ACEF KLIKQ++    E 
Sbjct: 61  RRKGKAIEMAGEDDLNDLSKVFTEKTTLVEKETDHEVVSKEEACEFLKLIKQNK----EI 120

Query: 121 LHRTPARISMLSLFMYSEPNH--KVLLD------ILNRAHV-----------GHDISVNA 180
             +       L + +  + +H  +VL+D      I++R+ +              + V A
Sbjct: 121 PPKGTGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTA 180

Query: 181 FS----EIVENIT-------ATKCISFTDKEISPE------------AGAVPSSLHQRLK 240
           F     E++ +I        +T  +SF   +++              AGAVPSSLHQRLK
Sbjct: 181 FDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLK 240

Query: 241 FSVEGGQAIVYREEDMFVTKTSTLPYVEAIEEALECSYRSFEIANATIFPTGAKEKFGLG 300
           FS+EGGQAIVY E+DMFVTKTS LPYVEAIEEALE                 +KEKFGLG
Sbjct: 241 FSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALE-----------------SKEKFGLG 300

Query: 301 YKPIASEWEKVRTKKKEKRSALLVGREMKEERISIPHLSETFKPRELLFDTDQRKRRKGD 358
           YKPIASEWEKVR KKKEKRS LL+GREMKEERI+IPHL ETFKP ELLFDT+QRKR   D
Sbjct: 301 YKPIASEWEKVRAKKKEKRSVLLMGREMKEERINIPHLFETFKPGELLFDTNQRKRCNKD 360

The following BLAST results are available for this feature:

BLAST of IVF0012397 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012397 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V681	2.0e-155	62.35	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UA36	3.7e-141	74.06	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7VAU5	1.6e-136	59.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U7X5	2.6e-118	62.75	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00152...	[more]
A0A5A7TI68	3.5e-107	54.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0012397 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061241.1	6.90e-185	62.35	uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa]	[more]
KAA0052108.1	3.98e-171	74.06	uncharacterized protein E6C27_scaffold578G00960 [Cucumis melo var. makuwa] >TYJ9...	[more]
KAA0065293.1	1.40e-156	59.92	uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa]	[more]
KAA0043020.1	2.15e-137	51.27	uncharacterized protein E6C27_scaffold75G00990 [Cucumis melo var. makuwa]	[more]
KAA0049671.1	5.23e-137	62.75	uncharacterized protein E6C27_scaffold76G00060 [Cucumis melo var. makuwa] >TYK12...	[more]

BLAST of IVF0012397 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33240:SF7	GAG-PRO-LIKE PROTEIN	coord: 186..247 coord: 5..185
None	No IPR available	PANTHER	PTHR33240	OS08G0508500 PROTEIN	coord: 186..247 coord: 5..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012397.1	IVF0012397.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process